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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-11-20 11:14:48 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2015-11-20 15:22:06 +0100 |
| commit | b49c5a58dcbc6f10ebeaef7ccb3d24ff59695db8 (patch) | |
| tree | 039c972816bd20a731bd54cc2c197968c9e46efb /gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch | |
| parent | c6a24d6e92c730d03dcfcde231fd6e7dece908ca (diff) | |
| download | guix-b49c5a58dcbc6f10ebeaef7ccb3d24ff59695db8.tar.gz | |
gnu: preseq: Update to 2.0.
* gnu/packages/bioinformatics.scm (preseq): Update to 2.0. [source]: Add file-name field, remove patches. [arguments]: Remove unused build phases, add make flags. [inputs]: Add smithlab-cpp. * gnu/packages/patches/preseq-1.0.2-link-with-libbam.patch: Remove file. * gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch: Remove file. * gnu-system.am (dist_patch_DATA): Remove them.
Diffstat (limited to 'gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch')
| -rw-r--r-- | gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch | 37 |
1 files changed, 0 insertions, 37 deletions
diff --git a/gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch b/gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch deleted file mode 100644 index f8318ae0f5..0000000000 --- a/gnu/packages/patches/preseq-1.0.2-install-to-PREFIX.patch +++ /dev/null @@ -1,37 +0,0 @@ -This patch has been submitted upstream: https://github.com/smithlabcode/preseq/pull/15 - -From 65387b0d766e6c06a15cf8d8f9183d9a4ba644bb Mon Sep 17 00:00:00 2001 -From: Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> -Date: Thu, 25 Jun 2015 15:01:53 +0200 -Subject: [PATCH] Install to PREFIX - ---- - Makefile | 8 ++++++-- - 1 file changed, 6 insertions(+), 2 deletions(-) - -diff --git a/Makefile b/Makefile -index 4d0367a..e334f2f 100644 ---- a/preseq-master/Makefile -+++ b/preseq-master/Makefile -@@ -22,6 +22,10 @@ ifndef ROOT - ROOT = $(shell pwd) - endif - -+ifndef PREFIX -+PREFIX = $(ROOT) -+endif -+ - ifndef SMITHLAB_CPP - SMITHLAB_CPP=$(ROOT)/smithlab_cpp/ - endif -@@ -91,8 +95,8 @@ endif - $(CXX) $(CXXFLAGS) -o $@ $^ $(INCLUDEARGS) $(LIBS) - - install: $(PROGS) -- @mkdir -p $(ROOT)/bin -- @install -m 755 $(PROGS) $(ROOT)/bin -+ @mkdir -p $(PREFIX)/bin -+ @install -m 755 $(PROGS) $(PREFIX)/bin - - clean: - @-rm -f $(PROGS) *.o *~ |