gnu: python-ipython: Update to 7.5.0

* gnu/packages/python-xyz.scm (python2-ipython): Do not inherit from
python-ipython.
[outputs]: Remove separate "doc" output.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; rename "fix-tests" phase to
"delete-broken-tests" and adjust.
(python-ipython): Update to 7.5.0.
[outputs]: Remove separate "doc" output.
[propagated-inputs]: Add python-backcall and python-jedi; replace
python-prompt-toolkit-1 with python-prompt-toolkit.
[native-inputs]: Remove python-sphinx, python-sphinx-rtd-theme, texinfo, and
the texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec,
texlive-generic-ifxetex, texlive-generic-pdftex, texlive-latex-amsfonts,
texlive-latex-capt-of, texlive-latex-cmap, texlive-latex-environ,
texlive-latex-eqparbox, texlive-latex-etoolbox, texlive-latex-expdlist,
texlive-latex-fancyhdr, texlive-latex-fancyvrb, texlive-latex-fncychap,
texlive-latex-float, texlive-latex-framed, texlive-latex-geometry,
texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-mdwtools,
texlive-latex-multirow, texlive-latex-oberdiek, texlive-latex-parskip,
texlive-latex-preview, texlive-latex-tabulary, texlive-latex-threeparttable,
texlive-latex-titlesec, texlive-latex-trimspaces, texlive-latex-ucs,
texlive-latex-upquote, texlive-latex-url, texlive-latex-varwidth, and
texlive-latex-wrapfig.
[arguments]: Remove "install-doc" phase; simplify "fix-tests" phase.
[properties]: Remove.
(python-ipython-documentation): New variable.

1 files changed, 150 insertions, 95 deletions

diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 0dd761cb3a..aca8a140e7 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -5117,10 +5117,10 @@ callback signature using a prototype function.")
 
 ;; This is the latest release of the LTS version of ipython with support for
 ;; Python 2.7 and Python 3.x.  Later non-LTS versions starting from 6.0 have
-;; dropped support for Python 2.7.  We may want to rename this package.
-(define-public python-ipython
+;; dropped support for Python 2.7.
+(define-public python2-ipython
   (package
-    (name "python-ipython")
+    (name "python2-ipython")
     (version "5.8.0")
     (source
      (origin
@@ -5129,14 +5129,75 @@ callback signature using a prototype function.")
        (sha256
         (base32 "01l93i4hspf0lvhmycvc8j378bslm9rw30mwfspsl6v1ayc69b2b"))))
     (build-system python-build-system)
-    (outputs '("out" "doc"))
     (propagated-inputs
-     `(("python-pyzmq" ,python-pyzmq)
-       ("python-prompt-toolkit" ,python-prompt-toolkit-1)
+     `(("python2-backports-shutil-get-terminal-size"
+        ,python2-backports-shutil-get-terminal-size)
+       ("python2-pathlib2" ,python2-pathlib2)
+       ("python2-pyzmq" ,python2-pyzmq)
+       ("python2-prompt-toolkit" ,python2-prompt-toolkit-1)
+       ("python2-terminado" ,python2-terminado)
+       ("python2-matplotlib" ,python2-matplotlib)
+       ("python2-numpy" ,python2-numpy)
+       ("python2-numpydoc" ,python2-numpydoc)
+       ("python2-jinja2" ,python2-jinja2)
+       ("python2-mistune" ,python2-mistune)
+       ("python2-pexpect" ,python2-pexpect)
+       ("python2-pickleshare" ,python2-pickleshare)
+       ("python2-simplegeneric" ,python2-simplegeneric)
+       ("python2-jsonschema" ,python2-jsonschema)
+       ("python2-traitlets" ,python2-traitlets)
+       ("python2-nbformat" ,python2-nbformat)
+       ("python2-pygments" ,python2-pygments)))
+    (inputs
+     `(("readline" ,readline)
+       ("which" ,which)))
+    (native-inputs
+     `(("graphviz" ,graphviz)
+       ("pkg-config" ,pkg-config)
+       ("python2-requests" ,python2-requests) ;; for tests
+       ("python2-testpath" ,python2-testpath)
+       ("python2-mock" ,python2-mock)
+       ("python2-nose" ,python2-nose)))
+    (arguments
+     `(#:python ,python-2
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'delete-broken-tests
+           (lambda* (#:key inputs #:allow-other-keys)
+             ;; These tests throw errors for unknown reasons.
+             (delete-file "IPython/core/tests/test_profile.py")
+             (delete-file "IPython/core/tests/test_interactiveshell.py")
+             (delete-file "IPython/core/tests/test_magic.py")
+             #t)))))
+    (home-page "https://ipython.org")
+    (synopsis "IPython is a tool for interactive computing in Python")
+    (description
+     "IPython provides a rich architecture for interactive computing with:
+Powerful interactive shells, a browser-based notebook, support for interactive
+data visualization, embeddable interpreters and tools for parallel
+computing.")
+    (license license:bsd-3)))
+
+(define-public python-ipython
+  (package
+    (name "python-ipython")
+    (version "7.5.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "ipython" version ".tar.gz"))
+       (sha256
+        (base32 "09mbxq37mfn88xjnib7qfzaq9krr7gf1jxwy1p6mcjr254082h78"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-backcall" ,python-backcall)
+       ("python-pyzmq" ,python-pyzmq)
+       ("python-prompt-toolkit" ,python-prompt-toolkit)
        ("python-terminado" ,python-terminado)
        ("python-matplotlib" ,python-matplotlib)
        ("python-numpy" ,python-numpy)
        ("python-numpydoc" ,python-numpydoc)
+       ("python-jedi" ,python-jedi)
        ("python-jinja2" ,python-jinja2)
        ("python-mistune" ,python-mistune)
        ("python-pexpect" ,python-pexpect)
@@ -5154,74 +5215,10 @@ callback signature using a prototype function.")
        ("pkg-config" ,pkg-config)
        ("python-requests" ,python-requests) ;; for tests
        ("python-testpath" ,python-testpath)
-       ("python-nose" ,python-nose)
-       ("python-sphinx" ,python-sphinx)
-       ("python-shpinx-rtd-theme" ,python-sphinx-rtd-theme)
-       ;; FIXME: It's possible that a smaller union would work just as well.
-       ("texlive" ,(texlive-union (list texlive-fonts-amsfonts
-                                        texlive-fonts-ec
-                                        texlive-generic-ifxetex
-                                        texlive-generic-pdftex
-                                        texlive-latex-amsfonts
-                                        texlive-latex-capt-of
-                                        texlive-latex-cmap
-                                        texlive-latex-environ
-                                        texlive-latex-eqparbox
-                                        texlive-latex-etoolbox
-                                        texlive-latex-expdlist
-                                        texlive-latex-fancyhdr
-                                        texlive-latex-fancyvrb
-                                        texlive-latex-fncychap
-                                        texlive-latex-float
-                                        texlive-latex-framed
-                                        texlive-latex-geometry
-                                        texlive-latex-graphics
-                                        texlive-latex-hyperref
-                                        texlive-latex-mdwtools
-                                        texlive-latex-multirow
-                                        texlive-latex-oberdiek
-                                        texlive-latex-parskip
-                                        texlive-latex-preview
-                                        texlive-latex-tabulary
-                                        texlive-latex-threeparttable
-                                        texlive-latex-titlesec
-                                        texlive-latex-trimspaces
-                                        texlive-latex-ucs
-                                        texlive-latex-upquote
-                                        texlive-latex-url
-                                        texlive-latex-varwidth
-                                        texlive-latex-wrapfig)))
-       ("texinfo" ,texinfo)))
+       ("python-nose" ,python-nose)))
     (arguments
      `(#:phases
        (modify-phases %standard-phases
-         (add-after 'install 'install-doc
-           (lambda* (#:key inputs outputs #:allow-other-keys)
-             (let* ((data (string-append (assoc-ref outputs "doc") "/share"))
-                    (doc (string-append data "/doc/" ,name "-" ,version))
-                    (html (string-append doc "/html"))
-                    (man1 (string-append data "/man/man1"))
-                    (info (string-append data "/info"))
-                    (examples (string-append doc "/examples"))
-                    (python-arg (string-append "PYTHON=" (which "python"))))
-               (setenv "LANG" "en_US.utf8")
-               ;; Make installed package available for running the tests
-               (add-installed-pythonpath inputs outputs)
-               (with-directory-excursion "docs"
-                 ;; FIXME: pdf fails to build
-                 ;;(system* "make" "pdf" "PAPER=a4")
-                 (system* "make" python-arg "html")
-                 (system* "make" python-arg "info"))
-               (copy-recursively "docs/man" man1)
-               (copy-recursively "examples" examples)
-               (copy-recursively "docs/build/html" html)
-               ;; (copy-file "docs/build/latex/ipython.pdf"
-               ;;            (string-append doc "/ipython.pdf"))
-               (mkdir-p info)
-               (copy-file "docs/build/texinfo/ipython.info"
-                          (string-append info "/ipython.info"))
-               (copy-file "COPYING.rst" (string-append doc "/COPYING.rst")))
-             #t))
          ;; Tests can only be run after the library has been installed and not
          ;; within the source directory.
          (delete 'check)
@@ -5244,19 +5241,11 @@ callback signature using a prototype function.")
              (substitute* "./IPython/core/tests/test_inputtransformer.py"
                (("#!/usr/bin/env python")
                 (string-append "#!" (which "python"))))
-             ;; Disable 1 failing test
-             (substitute* "./IPython/core/tests/test_magic.py"
-               (("def test_dirops\\(\\):" all)
-                (string-append "@dec.skipif(True)\n" all)))
              ;; This test introduces a circular dependency on ipykernel
              ;; (which depends on ipython).
              (delete-file "IPython/core/tests/test_display.py")
-             ;; These tests throw errors for unknown reasons.
-             (delete-file "IPython/extensions/tests/test_storemagic.py")
-             (delete-file "IPython/core/tests/test_displayhook.py")
+             ;; AttributeError: module 'IPython.core' has no attribute 'formatters'
              (delete-file "IPython/core/tests/test_interactiveshell.py")
-             (delete-file "IPython/core/tests/test_pylabtools.py")
-             (delete-file "IPython/core/tests/test_paths.py")
              #t)))))
     (home-page "https://ipython.org")
     (synopsis "IPython is a tool for interactive computing in Python")
@@ -5265,22 +5254,88 @@ callback signature using a prototype function.")
 Powerful interactive shells, a browser-based notebook, support for interactive
 data visualization, embeddable interpreters and tools for parallel
 computing.")
-    (license license:bsd-3)
-    (properties `((python2-variant . ,(delay python2-ipython))))))
+    (license license:bsd-3)))
 
-(define-public python2-ipython
-  (let ((ipython (package-with-python2 (strip-python2-variant python-ipython))))
-    (package
-      (inherit ipython)
-      ;; FIXME: add pyreadline once available.
-      (propagated-inputs
-       `(("python2-backports-shutil-get-terminal-size"
-          ,python2-backports-shutil-get-terminal-size)
-         ("python2-pathlib2" ,python2-pathlib2)
-         ,@(package-propagated-inputs ipython)))
-      (native-inputs
-       `(("python2-mock" ,python2-mock)
-         ,@(package-native-inputs ipython))))))
+(define-public python-ipython-documentation
+  (package
+    (inherit python-ipython)
+    (name "python-ipython-documentation")
+    (version (package-version python-ipython))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (delete 'build)
+         (delete 'check)
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((data (string-append (assoc-ref outputs "out") "/share"))
+                    (doc (string-append data "/doc/" ,name "-" ,version))
+                    (html (string-append doc "/html"))
+                    (man1 (string-append data "/man/man1"))
+                    (info (string-append data "/info"))
+                    (examples (string-append doc "/examples"))
+                    (python-arg (string-append "PYTHON=" (which "python"))))
+               (setenv "LANG" "en_US.utf8")
+               (with-directory-excursion "docs"
+                 ;; FIXME: pdf fails to build
+                 ;;(system* "make" "pdf" "PAPER=a4")
+                 (system* "make" python-arg "html")
+                 ;; FIXME: the generated texi file contains ^@^@, which trips
+                 ;; up the parser.
+                 ;; (system* "make" python-arg "info")
+                 )
+               (copy-recursively "docs/man" man1)
+               (copy-recursively "examples" examples)
+               (copy-recursively "docs/build/html" html)
+               ;; (copy-file "docs/build/latex/ipython.pdf"
+               ;;            (string-append doc "/ipython.pdf"))
+               (mkdir-p info)
+               ;; (copy-file "docs/build/texinfo/ipython.info"
+               ;;            (string-append info "/ipython.info"))
+               (copy-file "COPYING.rst" (string-append doc "/COPYING.rst")))
+             #t)))))
+    (inputs
+     `(("python-ipython" ,python-ipython)
+       ("python-ipykernel" ,python-ipykernel)))
+    (native-inputs
+     `(("python-sphinx" ,python-sphinx)
+       ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme)
+       ;; FIXME: It's possible that a smaller union would work just as well.
+       ("texlive" ,(texlive-union (list texlive-fonts-amsfonts
+                                        texlive-fonts-ec
+                                        texlive-generic-ifxetex
+                                        texlive-generic-pdftex
+                                        texlive-latex-amsfonts
+                                        texlive-latex-capt-of
+                                        texlive-latex-cmap
+                                        texlive-latex-environ
+                                        texlive-latex-eqparbox
+                                        texlive-latex-etoolbox
+                                        texlive-latex-expdlist
+                                        texlive-latex-fancyhdr
+                                        texlive-latex-fancyvrb
+                                        texlive-latex-fncychap
+                                        texlive-latex-float
+                                        texlive-latex-framed
+                                        texlive-latex-geometry
+                                        texlive-latex-graphics
+                                        texlive-latex-hyperref
+                                        texlive-latex-mdwtools
+                                        texlive-latex-multirow
+                                        texlive-latex-needspace
+                                        texlive-latex-oberdiek
+                                        texlive-latex-parskip
+                                        texlive-latex-preview
+                                        texlive-latex-tabulary
+                                        texlive-latex-threeparttable
+                                        texlive-latex-titlesec
+                                        texlive-latex-trimspaces
+                                        texlive-latex-ucs
+                                        texlive-latex-upquote
+                                        texlive-latex-url
+                                        texlive-latex-varwidth
+                                        texlive-latex-wrapfig)))
+       ("texinfo" ,texinfo)))))
 
 (define-public python-urwid
   (package