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author | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 11:38:29 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2021-03-15 11:43:20 +0100 |
commit | ad34eb222c9ebc2b31f03b70ba6655ebe8ee74b5 (patch) | |
tree | b2c3174262a3ba7c8fb57c0d1c32988b152bf572 /gnu/packages | |
parent | c20813bb08d19d424a5965da467599284adad8fc (diff) | |
download | guix-ad34eb222c9ebc2b31f03b70ba6655ebe8ee74b5.tar.gz |
gnu: Add python-drep.
* gnu/packages/bioinformatics.scm (python-drep): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b2d10457fe..c629b79c39 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13147,6 +13147,36 @@ create connections between analogous cells in different batches without altering the counts or PCA space.") (license license:expat))) +(define-public python-drep + (package + (name "python-drep") + (version "3.2.0") + (source + (origin + (method url-fetch) + (uri (pypi-uri "drep" version)) + (sha256 + (base32 + "08vk0x6v5c5n7afgd5pcjhsvb424absypxy22hw1cm1n9kirbi77")))) + (build-system python-build-system) + (propagated-inputs + `(("python-biopython" ,python-biopython) + ("python-matplotlib" ,python-matplotlib) + ("python-numpy" ,python-numpy) + ("python-pandas" ,python-pandas) + ("python-pytest" ,python-pytest) + ("python-scikit-learn" ,python-scikit-learn) + ("python-seaborn" ,python-seaborn) + ("python-tqdm" ,python-tqdm))) + (home-page "https://github.com/MrOlm/drep") + (synopsis "De-replication of microbial genomes assembled from multiple samples") + (description + "dRep is a Python program for rapidly comparing large numbers of genomes. +dRep can also \"de-replicate\" a genome set by identifying groups of highly +similar genomes and choosing the best representative genome for each genome +set.") + (license license:expat))) + (define-public gffcompare (let ((commit "be56ef4349ea3966c12c6397f85e49e047361c41") (revision "1")) |