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| author | zimoun <zimon.toutoune@gmail.com> | 2021-09-13 16:20:27 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2021-09-20 17:23:15 +0200 |
| commit | 8e54aafa3903b9bbf898170a86e4544db0ad23d3 (patch) | |
| tree | 0187d001d0caef414d3834c35b9dd4bb8dd0398d /gnu/packages | |
| parent | 3d2d11973579e505c7c41ea4638dd5a7ddbb7e31 (diff) | |
| download | guix-8e54aafa3903b9bbf898170a86e4544db0ad23d3.tar.gz | |
gnu: Add r-simplifyenrichment.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 25202410e5..062867b2ab 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4236,6 +4236,45 @@ purposes. The package also contains legacy support for early single-end, ungapped alignment formats.") (license license:artistic2.0))) +(define-public r-simplifyenrichment + (package + (name "r-simplifyenrichment") + (version "1.2.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "simplifyEnrichment" version)) + (sha256 + (base32 + "0rqa414kvyjjmj4932zk39rqa14z13b57rkrxdrf16jmq2r437vh")))) + (properties + `((upstream-name . "simplifyEnrichment"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi) + ("r-biocgenerics" ,r-biocgenerics) + ("r-circlize" ,r-circlize) + ("r-clue" ,r-clue) + ("r-cluster" ,r-cluster) + ("r-complexheatmap" ,r-complexheatmap) + ("r-digest" ,r-digest) + ("r-getoptlong" ,r-getoptlong) + ("r-go-db" ,r-go-db) + ("r-gosemsim" ,r-gosemsim) + ("r-matrix" ,r-matrix) + ("r-org-hs-eg-db" ,r-org-hs-eg-db) + ("r-proxyc" ,r-proxyc) + ("r-slam" ,r-slam) + ("r-tm" ,r-tm))) + (native-inputs `(("r-knitr" ,r-knitr))) + (home-page "https://github.com/jokergoo/simplifyEnrichment") + (synopsis "Simplify functional enrichment results") + (description "This package provides a new clustering algorithm, binary +cut, for clustering similarity matrices of functional terms is implemeted in +this package. It also provides functionalities for visualizing, summarizing +and comparing the clusterings.") + (license license:expat))) + (define-public r-trajectoryutils (package (name "r-trajectoryutils") |