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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2023-02-02 17:00:22 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2023-02-03 11:34:42 +0100 |
| commit | 89d76adf98e37ecef65cc71804df5b5fada8e774 (patch) | |
| tree | 24b7e5ee2a4441db2b8f815bfddd958c97b3bb30 /gnu/packages | |
| parent | ef879d7f40cdefc32718008d493c58c881273147 (diff) | |
| download | guix-89d76adf98e37ecef65cc71804df5b5fada8e774.tar.gz | |
gnu: Add python-pegasusio.
* gnu/packages/bioinformatics.scm (python-pegasusio): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 8be8976a15..b8676b0ece 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1138,6 +1138,37 @@ protocol. It provides a simple and reliable way to retrieve genomic data from servers supporting the protocol.") (license license:asl2.0))) +(define-public python-pegasusio + (package + (name "python-pegasusio") + (version "0.7.1") + (source (origin + (method url-fetch) + (uri (pypi-uri "pegasusio" version)) + (sha256 + (base32 + "0gqygspdy398vjymdy6756jmk99s7fhwav9rivdx59kpqjcdxaz9")))) + (build-system pyproject-build-system) + (propagated-inputs + (list python-anndata + python-docopt + python-h5py + python-importlib-metadata + python-loompy + python-natsort + python-numpy + python-pandas + python-pillow + python-scipy + python-zarr)) + (native-inputs (list python-cython python-setuptools-scm)) + (home-page "https://github.com/lilab-bcb/pegasusio") + (synopsis "Read or write single-cell genomics data") + (description + "Pegasusio is a Python package for reading or writing single-cell +genomics data.") + (license license:bsd-3))) + (define-public python-phylophlan (package (name "python-phylophlan") |