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author | Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> | 2023-03-20 17:00:02 +0100 |
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committer | Ricardo Wurmus <rekado@elephly.net> | 2023-03-20 18:25:10 +0100 |
commit | 9f09ac6b218e8538028394ce0aec4b6a8c479f54 (patch) | |
tree | fb5f909e9f72dc5b132309b41e5e5f09e052d0b4 /gnu/packages | |
parent | 284b5eca603ade3460474f0b97c85e17dd2dde39 (diff) | |
download | guix-9f09ac6b218e8538028394ce0aec4b6a8c479f54.tar.gz |
gnu: Add r-affyplm.
* gnu/packages/bioconductor.scm (r-affyplm): New variable.
Diffstat (limited to 'gnu/packages')
-rw-r--r-- | gnu/packages/bioconductor.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 20d1df89b8..f37cc98e3e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -2125,6 +2125,37 @@ employed to first background subtract intensities before calculating concentrations on behal of the Langmuir model.") (license license:gpl3))) +(define-public r-affyplm + (package + (name "r-affyplm") + (version "1.74.2") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "affyPLM" version)) + (sha256 + (base32 "0f0faxjzlg0znhjfvf1490yc54npkx659jx76cddm5hk7q0blv3v")))) + (properties `((upstream-name . "affyPLM"))) + (build-system r-build-system) + (inputs (list zlib)) + (propagated-inputs + (list r-affy + r-biobase + r-biocgenerics + r-gcrma + r-preprocesscore + r-zlibbioc)) + (home-page "https://github.com/bmbolstad/affyPLM") + (synopsis "Methods for fitting probe-level models") + (description + "The affyPLM provides a package that extends and improves the +functionality of the base affy package. For speeding up the runs, it includes +routines that make heavy use of compiled code. The central focus is on +implementation of methods for fitting probe-level models and tools using these +models. @acronym{PLM, probe-level models} based quality assessment tools are +also provided.") + (license license:gpl2+))) + (define-public r-affyrnadegradation (package (name "r-affyrnadegradation") |