diff options
| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 16:30:45 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-13 16:31:55 +0100 |
| commit | 23322c2de8565f4bfc6787f154d6ae2a078ba097 (patch) | |
| tree | 52cfe8f559e0ff7e238a5f83c8ca18404d00381e /gnu/packages | |
| parent | b339e181e1f9138c59934cdff330a73cc490cf32 (diff) | |
| download | guix-23322c2de8565f4bfc6787f154d6ae2a078ba097.tar.gz | |
gnu: tophat: Remove trailing #T from build phases and snippet.
* gnu/packages/bioinformatics.scm (tophat)[source]: Remove trailing #T from snippet. [arguments]: Remove trailing #T from build phases.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 |
1 files changed, 3 insertions, 6 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1dae5982ea..8236708391 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2062,8 +2062,7 @@ genome (2.9 GB for paired-end).") '(begin ;; Remove bundled SeqAn and samtools (delete-file-recursively "src/SeqAn-1.4.2") - (delete-file-recursively "src/samtools-0.1.18") - #t)))) + (delete-file-recursively "src/samtools-0.1.18"))))) (build-system gnu-build-system) (arguments '(#:parallel-build? #f ; not supported @@ -2078,8 +2077,7 @@ genome (2.9 GB for paired-end).") (string-join (delete (string-append gcc "/include/c++") (string-split (getenv "CPLUS_INCLUDE_PATH") #\:)) - ":")) - #t))) + ":"))))) (add-after 'unpack 'use-system-samtools (lambda* (#:key inputs #:allow-other-keys) (substitute* "src/Makefile.in" @@ -2099,8 +2097,7 @@ genome (2.9 GB for paired-end).") "src/map2gtf.h" "src/align_status.h") (("#include <bam.h>") "#include <samtools/bam.h>") - (("#include <sam.h>") "#include <samtools/sam.h>")) - #t))))) + (("#include <sam.h>") "#include <samtools/sam.h>"))))))) (native-inputs `(("gcc@5" ,gcc-5))) ;; doesn't build with later versions (inputs |