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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-08-16 16:48:39 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-08-16 17:04:13 +0200 |
| commit | b64ce4b72564b45a422f4e7ffc30a5b95de91cff (patch) | |
| tree | cb074141335fe3fef0fa17904634c692243bfe4c /gnu/packages | |
| parent | cea4d360d4b21c1dc27c9ec676bc08830f600c61 (diff) | |
| download | guix-b64ce4b72564b45a422f4e7ffc30a5b95de91cff.tar.gz | |
gnu: Add r-inspect.
* gnu/packages/bioconductor.scm (r-inspect): New variable.
Diffstat (limited to 'gnu/packages')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 37 |
1 files changed, 37 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index dfb0fe6d5a..7e993189d6 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -28,6 +28,7 @@ #:use-module (gnu packages cran) #:use-module (gnu packages compression) #:use-module (gnu packages graph) + #:use-module (gnu packages maths) #:use-module (gnu packages statistics) #:use-module (gnu packages web)) @@ -802,3 +803,39 @@ information.") @dfn{Reproducibility-Optimized Test Statistic} (ROTS) for differential testing in omics data.") (license license:gpl2+))) + +(define-public r-inspect + (package + (name "r-inspect") + (version "1.10.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "INSPEcT" version)) + (sha256 + (base32 + "1gk0pwyimkswrvgb2xr3c2zy4myi448a2shr5ap65rq9pcpp0l8p")))) + (properties `((upstream-name . "INSPEcT"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biocparallel" ,r-biocparallel) + ("r-desolve" ,r-desolve) + ("r-genomicalignments" ,r-genomicalignments) + ("r-genomicfeatures" ,r-genomicfeatures) + ("r-genomicranges" ,r-genomicranges) + ("r-iranges" ,r-iranges) + ("r-preprocesscore" ,r-preprocesscore) + ("r-proc" ,r-proc) + ("r-rootsolve" ,r-rootsolve) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors))) + (home-page "https://bioconductor.org/packages/INSPEcT") + (synopsis "Analysis of 4sU-seq and RNA-seq time-course data") + (description + "INSPEcT (INference of Synthesis, Processing and dEgradation rates in +Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in +order to evaluate synthesis, processing and degradation rates and assess via +modeling the rates that determines changes in mature mRNA levels.") + (license license:gpl2))) |