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authorKei Kebreau <kkebreau@posteo.net>2017-09-07 09:36:28 -0400
committerKei Kebreau <kkebreau@posteo.net>2017-09-10 18:21:35 -0400
commit4561498e1f207e83ecc4a9fe1a08935c2807160f (patch)
tree4e679e479e1dc42219efcca417039989e76cc627 /gnu/packages
parent1e8d398abca66bbe85caad6d338ac80a104701d2 (diff)
downloadguix-4561498e1f207e83ecc4a9fe1a08935c2807160f.tar.gz
gnu: Fix build failures caused by commit
d10092b849153dc27cfed0a9601fde6c7bdec918.

* gnu/packages/bioinformatics.scm (seek)[arguments]: Restore previous phase
order.
* gnu/packages/ci.scm (cuirass)[arguments]: Add patch-/bin/sh phase.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm2
-rw-r--r--gnu/packages/ci.scm7
2 files changed, 7 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bf8eb2e697..8a9abf7737 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4486,7 +4486,7 @@ distribution, coverage uniformity, strand specificity, etc.")
                        "Data2DB"
                        "PCL2Bin")))
            (modify-phases %standard-phases
-             (add-after 'unpack 'bootstrap
+             (add-before 'configure 'bootstrap
                (lambda _
                  (zero? (system* "bash" "gen_auto"))))
              (add-after 'build 'build-additional-tools
diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm
index c449754be8..f3259bfcda 100644
--- a/gnu/packages/ci.scm
+++ b/gnu/packages/ci.scm
@@ -216,7 +216,12 @@ their dependencies.")
                (substitute* "Makefile.am"
                  (("tests/repo.scm \\\\") "\\"))
                #t))
-           (add-after 'disable-repo-tests 'bootstrap
+           (add-after 'disable-repo-tests 'patch-/bin/sh
+             (lambda _
+               (substitute* "build-aux/git-version-gen"
+                 (("#!/bin/sh") (string-append "#!" (which "sh"))))
+               #t))
+           (add-after 'patch-/bin/sh 'bootstrap
              (lambda _ (zero? (system* "sh" "bootstrap"))))
            (add-after 'install 'wrap-program
              (lambda* (#:key inputs outputs #:allow-other-keys)