diff options
| author | Marius Bakke <mbakke@fastmail.com> | 2019-03-06 16:31:58 +0100 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2019-03-06 16:31:58 +0100 |
| commit | f339df425eb00cb8d9418b3a338d7e03afd4a09c (patch) | |
| tree | 63770d1bfb9325f843f20b2f2d793f291b42f8d8 /gnu/packages | |
| parent | e21bd8dff8e85635ef96c4bf043dda6539f604cd (diff) | |
| parent | 7016e62070b27d8e77e3ec7b4dd5e78653ade114 (diff) | |
| download | guix-f339df425eb00cb8d9418b3a338d7e03afd4a09c.tar.gz | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu/packages')
30 files changed, 1065 insertions, 384 deletions
diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index f425c2947c..cc687a14fa 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com> ;;; Copyright © 2014, 2015, 2016, 2018 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org> @@ -1143,7 +1143,9 @@ WLAN driver. This package provides the 'wpa_supplicant' daemon and the 'wpa_cli' command.") ;; In practice, this is linked against Readline, which makes it GPLv3+. - (license license:bsd-3))) + (license license:bsd-3) + + (properties `((cpe-name . "wpa_supplicant"))))) (define-public wpa-supplicant (package (inherit wpa-supplicant-minimal) diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index ae9d7070c3..ed950d5687 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -170,6 +170,32 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default." ) (license license:artistic2.0))) +(define-public r-org-dr-eg-db + (package + (name "r-org-dr-eg-db") + (version "3.7.0") + (source (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/annotation/" instead of "bioc/". + (uri (string-append "https://www.bioconductor.org/packages/" + "release/data/annotation/src/contrib/" + "org.Dr.eg.db_" version ".tar.gz")) + (sha256 + (base32 + "1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx")))) + (properties + `((upstream-name . "org.Dr.eg.db"))) + (build-system r-build-system) + (propagated-inputs + `(("r-annotationdbi" ,r-annotationdbi))) + (home-page "https://www.bioconductor.org/packages/org.Dr.eg.db/") + (synopsis "Annotation for Zebrafish") + (description + "This package provides genome wide annotations for Zebrafish, primarily +based on mapping using Entrez Gene identifiers.") + (license license:artistic2.0))) + (define-public r-genelendatabase (package (name "r-genelendatabase") diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 982cb7a984..4481235c78 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -84,6 +84,7 @@ #:use-module (gnu packages jemalloc) #:use-module (gnu packages dlang) #:use-module (gnu packages linux) + #:use-module (gnu packages lisp) #:use-module (gnu packages logging) #:use-module (gnu packages machine-learning) #:use-module (gnu packages man) @@ -1384,6 +1385,46 @@ gapped, local, and paired-end alignment modes.") (supported-systems '("x86_64-linux")) (license license:gpl3+))) +(define-public bowtie1 + (package + (name "bowtie1") + (version "1.2.2") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/bowtie-bio/bowtie/" + version "/bowtie-" version "-src.zip")) + (sha256 + (base32 + "1jl2cj9bz8lwz8dwnxbycn8yp8g4kky62fkcxifyf1ri0y6n2vc0")) + (modules '((guix build utils))) + (snippet + '(substitute* "Makefile" + ;; replace BUILD_HOST and BUILD_TIME for deterministic build + (("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"") + (("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\""))))) + (build-system gnu-build-system) + (arguments + '(#:tests? #f ; no "check" target + #:make-flags + (list "all" + (string-append "prefix=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (inputs + `(("tbb" ,tbb) + ("zlib" ,zlib))) + (supported-systems '("x86_64-linux")) + (home-page "http://bowtie-bio.sourceforge.net/index.shtml") + (synopsis "Fast aligner for short nucleotide sequence reads") + (description + "Bowtie is a fast, memory-efficient short read aligner. It aligns short +DNA sequences (reads) to the human genome at a rate of over 25 million 35-bp +reads per hour. Bowtie indexes the genome with a Burrows-Wheeler index to +keep its memory footprint small: typically about 2.2 GB for the human +genome (2.9 GB for paired-end).") + (license license:artistic2.0))) + (define-public tophat (package (name "tophat") @@ -6240,6 +6281,48 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-scde + (package + (name "r-scde") + (version "1.99.2") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/hms-dbmi/scde.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "10na2gyka24mszdxf92wz9h2c13hdf1ww30c68gfsw53lvvhhhxb")))) + (build-system r-build-system) + (propagated-inputs + `(("r-rcpp" ,r-rcpp) + ("r-rcpparmadillo" ,r-rcpparmadillo) + ("r-mgcv" ,r-mgcv) + ("r-rook" ,r-rook) + ("r-rjson" ,r-rjson) + ("r-cairo" ,r-cairo) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-edger" ,r-edger) + ("r-quantreg" ,r-quantreg) + ("r-nnet" ,r-nnet) + ("r-rmtstat" ,r-rmtstat) + ("r-extremes" ,r-extremes) + ("r-pcamethods" ,r-pcamethods) + ("r-biocparallel" ,r-biocparallel) + ("r-flexmix" ,r-flexmix))) + (home-page "https://hms-dbmi.github.io/scde/") + (synopsis "R package for analyzing single-cell RNA-seq data") + (description "The SCDE package implements a set of statistical methods for +analyzing single-cell RNA-seq data. SCDE fits individual error models for +single-cell RNA-seq measurements. These models can then be used for +assessment of differential expression between groups of cells, as well as +other types of analysis. The SCDE package also contains the pagoda framework +which applies pathway and gene set overdispersion analysis to identify aspects +of transcriptional heterogeneity among single cells.") + ;; See https://github.com/hms-dbmi/scde/issues/38 + (license license:gpl2))) + (define-public r-centipede (package (name "r-centipede") @@ -7127,28 +7210,6 @@ checks on R packages that are to be submitted to the Bioconductor repository.") that accept short and long options.") (license license:gpl2+))) -(define-public r-dnacopy - (package - (name "r-dnacopy") - (version "1.56.0") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "DNAcopy" version)) - (sha256 - (base32 - "04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82")))) - (properties - `((upstream-name . "DNAcopy"))) - (build-system r-build-system) - (inputs - `(("gfortran" ,gfortran))) - (home-page "https://bioconductor.org/packages/DNAcopy") - (synopsis "Implementation of a circular binary segmentation algorithm") - (description "This package implements the circular binary segmentation (CBS) -algorithm to segment DNA copy number data and identify genomic regions with -abnormal copy number.") - (license license:gpl2+))) - (define-public r-s4vectors (package (name "r-s4vectors") @@ -11613,7 +11674,7 @@ Browser.") (define-public bismark (package (name "bismark") - (version "0.19.1") + (version "0.20.1") (source (origin (method git-fetch) @@ -11623,18 +11684,25 @@ Browser.") (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "0yb5l36slwg02fp4b1jdlplgljcsxgqfzvzihzdnphd87dghcc84")) - (snippet - '(begin - ;; highcharts.js is non-free software. The code is available under - ;; CC-BY-NC or proprietary licenses only. - (delete-file "bismark_sitrep/highcharts.js") - #t)))) + "0xchm3rgilj6vfjnyzfzzymfd7djr64sbrmrvs3njbwi66jqbzw9")))) (build-system perl-build-system) (arguments `(#:tests? #f ; there are no tests + #:modules ((guix build utils) + (ice-9 popen) + (srfi srfi-26) + (guix build perl-build-system)) #:phases (modify-phases %standard-phases + ;; The bundled plotly.js is minified. + (add-after 'unpack 'replace-plotly.js + (lambda* (#:key inputs #:allow-other-keys) + (let* ((file (assoc-ref inputs "plotly.js")) + (installed "plotly/plotly.js")) + (let ((minified (open-pipe* OPEN_READ "uglify-js" file))) + (call-with-output-file installed + (cut dump-port minified <>)))) + #t)) (delete 'configure) (delete 'build) (replace 'install @@ -11653,10 +11721,11 @@ Browser.") "deduplicate_bismark" "filter_non_conversion" "bam2nuc" - "bismark2summary"))) + "bismark2summary" + "NOMe_filtering"))) (substitute* "bismark2report" - (("\\$RealBin/bismark_sitrep") - (string-append share "/bismark_sitrep"))) + (("\\$RealBin/plotly") + (string-append share "/plotly"))) (mkdir-p share) (mkdir-p docdir) (mkdir-p bin) @@ -11665,8 +11734,8 @@ Browser.") (for-each (lambda (file) (install-file file docdir)) docs) (copy-recursively "Docs/Images" (string-append docdir "/Images")) - (copy-recursively "bismark_sitrep" - (string-append share "/bismark_sitrep")) + (copy-recursively "plotly" + (string-append share "/plotly")) ;; Fix references to gunzip (substitute* (map (lambda (file) @@ -11677,7 +11746,18 @@ Browser.") "/bin/gunzip -c"))) #t)))))) (inputs - `(("gzip" ,gzip))) + `(("gzip" ,gzip) + ("perl-carp" ,perl-carp) + ("perl-getopt-long" ,perl-getopt-long))) + (native-inputs + `(("plotly.js" + ,(origin + (method url-fetch) + (uri (string-append "https://raw.githubusercontent.com/plotly/plotly.js/" + "v1.39.4/dist/plotly.js")) + (sha256 + (base32 "138mwsr4nf5qif4mrxx286mpnagxd1xwl6k8aidrjgknaqg88zyr")))) + ("uglify-js" ,uglify-js))) (home-page "http://www.bioinformatics.babraham.ac.uk/projects/bismark/") (synopsis "Map bisulfite treated sequence reads and analyze methylation") (description "Bismark is a program to map bisulfite treated sequencing @@ -13135,6 +13215,38 @@ descriptive settings file. The result is a set of comprehensive, interactive HTML reports with interesting findings about your samples.") (license license:gpl3+))) +(define-public genrich + (package + (name "genrich") + (version "0.5") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/jsh58/Genrich.git") + (commit (string-append "v" version)))) + (sha256 + (base32 + "0x0q6z0208n3cxzqjla4rgjqpyqgwpmz27852lcvzkzaigymq4zp")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; there are none + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (install-file "Genrich" (string-append (assoc-ref outputs "out") "/bin")) + #t))))) + (inputs + `(("zlib" ,zlib))) + (home-page "https://github.com/jsh58/Genrich") + (synopsis "Detecting sites of genomic enrichment") + (description "Genrich is a peak-caller for genomic enrichment +assays (e.g. ChIP-seq, ATAC-seq). It analyzes alignment files generated +following the assay and produces a file detailing peaks of significant +enrichment.") + (license license:expat))) + (define-public mantis (let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84") (revision "1")) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 712dafae90..30248f673a 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -13166,7 +13166,7 @@ opposed to character-based).") (define-public emacs-disk-usage (package (name "emacs-disk-usage") - (version "1.2.0") + (version "1.3.0") (home-page "https://gitlab.com/Ambrevar/emacs-disk-usage") (source (origin @@ -13177,7 +13177,7 @@ opposed to character-based).") ".el")) (sha256 (base32 - "13n6bsrz8q07fl6sd7wi5zvf01m5xw11hmrpdz7wcn49v6vs3whl")))) + "0ky6c34z7c6hd4yvcrcsidkfk2kvffkg63v02vch2i6hg1n6n028")))) (build-system emacs-build-system) (synopsis "Sort and browse disk usage listings with Emacs") (description "Disk Usage is a file system analyzer: it offers a tabulated diff --git a/gnu/packages/emacs.scm b/gnu/packages/emacs.scm index 34b70fe9e8..1e76f0821c 100644 --- a/gnu/packages/emacs.scm +++ b/gnu/packages/emacs.scm @@ -251,8 +251,10 @@ editor (without an X toolkit)" ) (build-system gnu-build-system) (inputs (append `(("inotify-tools" ,inotify-tools)) (alist-delete "gtk+" (package-inputs emacs)))) - (arguments (append '(#:configure-flags '("--with-x-toolkit=no")) - (package-arguments emacs))))) + (arguments + `(,@(substitute-keyword-arguments (package-arguments emacs) + ((#:configure-flags cf) + `(cons "--with-x-toolkit=no" ,cf))))))) (define-public guile-emacs (let ((commit "41120e0f595b16387eebfbf731fff70481de1b4b") diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm index 6c562d977d..2b60f80fda 100644 --- a/gnu/packages/fonts.scm +++ b/gnu/packages/fonts.scm @@ -344,33 +344,23 @@ Biolinum is available in both Regular and Bold weights.") (define-public font-terminus (package (name "font-terminus") - (version "4.40") + (version "4.47") (source - (origin - (method url-fetch) - (uri (string-append - "mirror://sourceforge/terminus-font/terminus-font-" - version - "/terminus-font-" - version - ".tar.gz")) - (sha256 - (base32 - "0487cyx5h1f0crbny5sg73a22gmym5vk1i7646gy7hgiscj2rxb4")))) + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/terminus-font/terminus-font-" + version "/terminus-font-" version ".tar.gz")) + (sha256 + (base32 "15qjcpalcxjiwsjgjg5k88vkwp56cs2nnx4ghya6mqp4i1c206qg")))) (build-system gnu-build-system) (native-inputs - `(("pkg-config" ,pkg-config) - ("perl" ,perl) - ("bdftopcf" ,bdftopcf) + `(("bdftopcf" ,bdftopcf) ("font-util" ,font-util) - ("mkfontdir" ,mkfontdir))) + ("mkfontdir" ,mkfontdir) + ("pkg-config" ,pkg-config) + ("python" ,python))) (arguments - `(#:configure-flags (list - ;; install fonts into subdirectory of package output - ;; instead of font-util-?.?.?/share/fonts/X11 - (string-append "--with-fontrootdir=" - %output "/share/fonts/X11")) - #:tests? #f)) ;; No test target in tarball + `(#:tests? #f)) ; no test target in tarball (home-page "http://terminus-font.sourceforge.net/") (synopsis "Simple bitmap programming font") (description "Terminus Font is a clean, fixed-width bitmap font, designed @@ -505,12 +495,11 @@ variants.") "mirror://sourceforge/wqy/wqy-zenhei/" version "%20%28Fighting-state%20RC1%29/wqy-zenhei-" version ".tar.gz")) - (file-name (string-append "wqy-zenhei-" version ".tar.gz")) (sha256 (base32 "1mkmxq8g2hjcglb3zajfqj20r4r88l78ymsp2xyl5yav8w3f7dz4")))) (build-system font-build-system) - (home-page "http://wenq.org/wqy2/") + (home-page "https://wenq.org/wqy2/") (synopsis "CJK font") (description "WenQuanYi Zen Hei is a Hei-Ti style (sans-serif type) Chinese outline @@ -522,7 +511,7 @@ this font is over 35,000, including over 21,000 Chinese Hanzi. This font has full coverage of the GBK (CP936) charset, CJK Unified Ideographs, as well as the code-points needed for zh_cn, zh_sg, zh_tw, zh_hk, zh_mo, ja (Japanese) and ko (Korean) locales for @code{fontconfig}.") - ;; GPLv2 with font embedding exception + ;; GPLv2 with font embedding exception. (license license:gpl2))) (define-public font-wqy-microhei @@ -607,13 +596,13 @@ Heros, Pagella, Schola, Termes.") (source (origin (method url-fetch) (uri (string-append - "http://www.marksimonson.com/assets/content/fonts/" + "https://www.marksimonson.com/assets/content/fonts/" "AnonymousPro-" version ".zip")) (sha256 (base32 "1asj6lykvxh46czbal7ymy2k861zlcdqpz8x3s5bbpqwlm3mhrl6")))) (build-system font-build-system) - (home-page "http://www.marksimonson.com/fonts/view/anonymous-pro") + (home-page "https://www.marksimonson.com/fonts/view/anonymous-pro") (synopsis "Fixed-width fonts designed with coding in mind") (description "Anonymous Pro is a family of four fixed-width fonts designed with coding in mind. Anonymous Pro features an international, Unicode-based @@ -948,7 +937,7 @@ Sans Pro family.") (define-public font-fira-code (package (name "font-fira-code") - (version "1.205") + (version "1.206") (source (origin (method url-fetch/zipbomb) (uri (string-append "https://github.com/tonsky/FiraCode/releases/" @@ -956,7 +945,7 @@ Sans Pro family.") "/FiraCode_" version ".zip")) (sha256 (base32 - "13bxgf59g6fw5191xclcjzn22hj8jk9k5jjwf7vz07mpjbgadcl5")))) + "02r1lcp0c9135ps71v66wdvbsrcxwirrp0blqsa1xbjkkq2rwgj3")))) (build-system font-build-system) (home-page "https://mozilla.github.io/Fira/") (synopsis "Monospaced font with programming ligatures") diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index 53c476330b..8e0ef76165 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -4411,7 +4411,7 @@ fish. The whole game is accompanied by quiet, comforting music.") (define-public crawl (package (name "crawl") - (version "0.22.1") + (version "0.23.1") (source (origin (method url-fetch) @@ -4425,7 +4425,7 @@ fish. The whole game is accompanied by quiet, comforting music.") version "-nodeps.tar.xz"))) (sha256 (base32 - "1qc90wwbxvjzqq66n8kfr0a2ny7sfvv2n84si67jiv2887d0ws6k")) + "0c3mx49kpz6i2xvv2dwsaj9s7mm4mif1h2qdkfyi80lv2j1ay51h")) (patches (search-patches "crawl-upgrade-saves.patch")))) (build-system gnu-build-system) (inputs @@ -4437,6 +4437,8 @@ fish. The whole game is accompanied by quiet, comforting music.") `(("bison" ,bison) ("flex" ,flex) ("perl" ,perl) + ("python" ,python) + ("python-pyyaml" ,python-pyyaml) ("pkg-config" ,pkg-config))) (arguments '(#:make-flags @@ -4452,16 +4454,19 @@ fish. The whole game is accompanied by quiet, comforting music.") "-Csource")) #:phases (modify-phases %standard-phases + (add-after 'unpack 'patch-python + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "source/util/species-gen.py" + (("python") "python3")) + #t)) (delete 'configure) - (delete 'check) - ;; Test cases require the source to be rebuild with the -DDEBUG define. - ;; Do 'check before 'build to avoid a 3rd build on make install. - (add-before 'build 'check + (replace 'check (lambda* (#:key inputs outputs make-flags #:allow-other-keys) (setenv "HOME" (getcwd)) ;; Fake a terminal for the test cases. (setenv "TERM" "xterm-256color") - (apply invoke "make" "debug" "test" + ;; Run the tests that don't require a debug build. + (apply invoke "make" "nondebugtest" (format #f "-j~d" (parallel-job-count)) ;; Force command line build for test cases. (append make-flags '("GAME=crawl" "TILES=")))))))) diff --git a/gnu/packages/gimp.scm b/gnu/packages/gimp.scm index 9f0a87a40a..575666fdeb 100644 --- a/gnu/packages/gimp.scm +++ b/gnu/packages/gimp.scm @@ -80,7 +80,7 @@ provided, as well as a framework to add new color models and data types.") (define-public gegl (package (name "gegl") - (version "0.4.12") + (version "0.4.14") (source (origin (method url-fetch) (uri (list (string-append "https://download.gimp.org/pub/gegl/" @@ -88,7 +88,7 @@ provided, as well as a framework to add new color models and data types.") "/gegl-" version ".tar.bz2"))) (sha256 (base32 - "0ljqxc4iyy2hrj31pxcy1xp4xm5zbx1nigqisphmg4p8mcz2jrz9")))) + "00crhngwi07f5b9x77kx5p7p4cl6l5g6glpz9rqv7pfqk62xa0ac")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("LDFLAGS=-lm"))) diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index 8a336a50f4..c3cb9cab23 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com> -;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -718,7 +718,7 @@ mixed vector/bitmap output.") (define-public virtualgl (package (name "virtualgl") - (version "2.6") + (version "2.6.1") (source (origin (method git-fetch) @@ -727,8 +727,7 @@ mixed vector/bitmap output.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 - "0di2igj2bhwb153fndgxks7y57pyhp0gj31n47j93gb7lxc9qcck")))) + (base32 "04fdwm6mz76lw4iwd5m7yxjfhpa0rpxd357bv5smk5lclnlbz1bv")))) (arguments `(#:tests? #f ; no tests are available #:configure-flags (list diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 9bc32aaa5e..f835337f12 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -6708,16 +6708,16 @@ the Moka icon theme.") (define-public folks (package (name "folks") - (version "0.11.2") + (version "0.11.4") (source (origin (method url-fetch) (uri (string-append - "mirror://gnome/sources/" name "/" + "mirror://gnome/sources/folks/" (version-major+minor version) "/" - name "-" version ".tar.xz")) + "folks-" version ".tar.xz")) (sha256 (base32 - "1f51albxgfqxbax57i3pcgv2fx7i419xaapzdvldas6gw100ma1m")))) + "16hqh2gxlbx0b0hgq216hndr1m72vj54jvryzii9zqkk0g9kxc57")))) (build-system glib-or-gtk-build-system) (inputs `(("bdb" ,bdb) diff --git a/gnu/packages/golang.scm b/gnu/packages/golang.scm index 768e641786..cfdf6932bb 100644 --- a/gnu/packages/golang.scm +++ b/gnu/packages/golang.scm @@ -668,7 +668,7 @@ termination.") (define-public go-github.com-jtolds-gls (package (name "go-github.com-jtolds-gls") - (version "4.2.1") + (version "4.20") (source (origin (method git-fetch) (uri (git-reference @@ -677,7 +677,7 @@ termination.") (file-name (git-file-name name version)) (sha256 (base32 - "1vm37pvn0k4r6d3m620swwgama63laz8hhj3pyisdhxwam4m2g1h")))) + "1k7xd2q2ysv2xsh373qs801v6f359240kx0vrl0ydh7731lngvk6")))) (build-system go-build-system) (arguments '(#:import-path "github.com/jtolds/gls")) diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index 8febe605a7..856f02f793 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -49,9 +49,11 @@ #:use-module (gnu packages disk) #:use-module (gnu packages ed) #:use-module (gnu packages emacs) + #:use-module (gnu packages emacs-xyz) #:use-module (gnu packages gawk) #:use-module (gnu packages gettext) #:use-module (gnu packages gl) + #:use-module (gnu packages gnome) #:use-module (gnu packages gperf) #:use-module (gnu packages guile) #:use-module (gnu packages hurd) @@ -2000,3 +2002,58 @@ format is also supported.") "This package provides a simple SVG-based picture language for Guile. The picture values can directly be displayed in Geiser.") (license license:lgpl3+)))) + +(define-public guile-studio + (let ((commit "e2da64f014942a73996286c4abe3c3b1f8bd220c") + (revision "1")) + (package + (name "guile-studio") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.elephly.net/software/guile-studio.git") + (commit commit))) + (sha256 + (base32 + "10v3kw41bzd8c2a6vxgrwbvl216d0k8f5s9h6pm8hahpd03jl7lm")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f ; there are none + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'build + (lambda* (#:key source inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin/")) + (share (string-append out "/share/"))) + (mkdir-p share) + (mkdir-p bin) + (apply invoke "guile" "-s" "guile-studio-configure.scm" + out + (assoc-ref inputs "emacs") + (assoc-ref inputs "guile-picture-language") + (string-append (assoc-ref inputs "adwaita-icon-theme") + "/share/icons/Adwaita/") + (map cdr inputs)) + #t))) + (delete 'install)))) + (inputs + `(("guile" ,guile-2.2) + ("guile-picture-language" ,guile-picture-language) + ("emacs" ,emacs) + ("emacs-geiser" ,emacs-geiser) + ("emacs-company" ,emacs-company) + ("emacs-flycheck" ,emacs-flycheck) + ("emacs-smart-mode-line" ,emacs-smart-mode-line) + ("emacs-paren-face" ,emacs-paren-face) + ("adwaita-icon-theme" ,adwaita-icon-theme))) + (home-page "https://gnu.org/software/guile") + (synopsis "IDE for Guile") + (description + "This is Emacs with a few settings that make working with Guile easier +for people new to Emacs. Features include: CUA mode, Geiser, tool bar icons +to evaluate Guile buffers, support for Guile's very own picture language, code +completion, a simple mode line, etc.") + (license license:gpl3+)))) diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm index 43ba9d2d17..89f2a8f5e2 100644 --- a/gnu/packages/java.scm +++ b/gnu/packages/java.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2017 Carlo Zancanaro <carlo@zancanaro.id.au> @@ -5452,7 +5452,7 @@ specification.") (define-public java-eclipse-equinox-common (package (name "java-eclipse-equinox-common") - (version "3.8.0") + (version "3.10.200") (source (origin (method url-fetch) (uri (string-append "https://repo1.maven.org/maven2/" @@ -5461,7 +5461,7 @@ specification.") version "-sources.jar")) (sha256 (base32 - "12aazpkgw46r1qj0pr421jzwhbmsizd97r37krd7njnbrdgfzksc")))) + "1yn8ij6xsljlf35sr2l7wvyvc0ss4n1rv0ry5zkgb49dj4hyrqrj")))) (build-system ant-build-system) (arguments `(#:tests? #f ; no tests included @@ -5611,7 +5611,7 @@ the module @code{org.eclipse.equinox.preferences}.") (define-public java-eclipse-core-runtime (package (name "java-eclipse-core-runtime") - (version "3.12.0") + (version "3.15.100") (source (origin (method url-fetch) (uri (string-append "https://repo1.maven.org/maven2/" @@ -5620,7 +5620,7 @@ the module @code{org.eclipse.equinox.preferences}.") version "-sources.jar")) (sha256 (base32 - "16mkf8jgj35pgzms7w1gyfq0gfm4ixw6c5xbbxzdj1la56c758ya")))) + "0l8xayacsbjvz5hypx2fv47vpw2n4dspamcfb3hx30x9hj8vmg7r")))) (build-system ant-build-system) (arguments `(#:tests? #f ; no tests included @@ -5759,7 +5759,7 @@ the module @code{org.eclipse.ant.core}.") (define-public java-eclipse-core-resources (package (name "java-eclipse-core-resources") - (version "3.11.1") + (version "3.13.200") (source (origin (method url-fetch) (uri (string-append "https://repo1.maven.org/maven2/" @@ -5768,7 +5768,7 @@ the module @code{org.eclipse.ant.core}.") version "-sources.jar")) (sha256 (base32 - "1hrfxrll6cpcagfksk2na1ypvkcnsp0fk6n3vcsrn97qayf9mx9l")))) + "1sn3b6ky72hkvxcgf9b2jkpbdh3y8lbhi9xxwv1dsiddpkkq91hs")))) (build-system ant-build-system) (arguments `(#:tests? #f ; no tests included @@ -5935,7 +5935,7 @@ and contributes the Eclipse default text editor.") (define-public java-eclipse-jdt-core (package (name "java-eclipse-jdt-core") - (version "3.12.3") + (version "3.16.0") (source (origin (method url-fetch) (uri (string-append "https://repo1.maven.org/maven2/" @@ -5944,11 +5944,28 @@ and contributes the Eclipse default text editor.") version "-sources.jar")) (sha256 (base32 - "191xw4lc7mjjkprh4ji5vnpjvr5r4zvbpwkriy4bvsjqrz35vh1j")))) + "1g560yr9v2kzv34gc2m3ifpgnj7krcdd6h4gd4z83pwqacwkfz0k")))) (build-system ant-build-system) (arguments `(#:tests? #f ; no tests included - #:jar-name "eclipse-jdt-core.jar")) + #:jar-name "eclipse-jdt-core.jar" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'move-sources + (lambda _ + (with-directory-excursion "src/jdtCompilerAdaptersrc/" + (for-each (lambda (file) + (install-file file (string-append "../" (dirname file)))) + (find-files "." ".*"))) + (delete-file-recursively "src/jdtCompilerAdaptersrc/") + #t)) + (add-before 'build 'copy-resources + (lambda _ + (with-directory-excursion "src" + (for-each (lambda (file) + (install-file file (string-append "../build/classes/" (dirname file)))) + (find-files "." ".*.(props|properties|rsc)"))) + #t))))) (inputs `(("java-eclipse-core-contenttype" ,java-eclipse-core-contenttype) ("java-eclipse-core-filesystem" ,java-eclipse-core-filesystem) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 53b15b414a..4519b26d8f 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org> ;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Mark H Weaver <mhw@netris.org> @@ -98,6 +98,7 @@ #:use-module (gnu packages readline) #:use-module (gnu packages rrdtool) #:use-module (gnu packages samba) + #:use-module (gnu packages serialization) #:use-module (gnu packages slang) #:use-module (gnu packages storage) #:use-module (gnu packages texinfo) @@ -2486,14 +2487,14 @@ It works with most newer systems.") (define-public iucode-tool (package (name "iucode-tool") - (version "2.2") + (version "2.3.1") (source (origin (method url-fetch) (uri (string-append "https://gitlab.com/iucode-tool/releases" "/raw/latest/iucode-tool_" version ".tar.xz")) (sha256 (base32 - "0w99k1aq1xw148ffk1xykqf60rdbphb1jknw98jcmadq4pwxl44q")))) + "159gvf6ljgg3g4vlhyy6pyr0wz11rcyhp985vc4az58d9px8xf0j")))) (build-system gnu-build-system) (home-page "https://gitlab.com/iucode-tool/iucode-tool/wikis/home") (synopsis "Manipulate Intel microcode bundles") @@ -2662,7 +2663,22 @@ thanks to the use of namespaces.") "/singularity-" version ".tar.gz")) (sha256 (base32 - "1whx0hqqi1326scgdxxxa1d94vn95mnq0drid6s8wdp84ni4d3gk")))) + "1whx0hqqi1326scgdxxxa1d94vn95mnq0drid6s8wdp84ni4d3gk")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Do not create directories in /var. + (substitute* "Makefile.in" + (("\\$\\(MAKE\\) .*install-data-hook") "")) + + ;; The original source overrides PATH so that it points to + ;; /bin, /usr/local/bin, etc., which obviously doesn't work + ;; on Guix System. Leave PATH unchanged so we refer to the + ;; installed Coreutils, grep, etc. + (substitute* "bin/singularity.in" + (("^PATH=.*" all) + (string-append "#" all "\n"))) + #t)))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -2670,12 +2686,6 @@ thanks to the use of namespaces.") "--localstatedir=/var") #:phases (modify-phases %standard-phases - ;; Do not create directories in /var. - (add-after 'unpack 'disable-install-hook - (lambda _ - (substitute* "Makefile.in" - (("\\$\\(MAKE\\) .*install-data-hook") "")) - #t)) (add-after 'unpack 'patch-reference-to-squashfs-tools (lambda _ (substitute* "libexec/cli/build.exec" @@ -3251,6 +3261,32 @@ is flexible, efficient and uses a modular implementation.") write access to exFAT devices.") (license license:gpl2+))) +(define-public fuseiso + (package + (name "fuseiso") + (version "20070708") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/fuseiso/fuseiso/" + version "/fuseiso-" version ".tar.bz2")) + (sha256 + (base32 + "127xql52dcdhmh7s5m9xc6q39jdlj3zhbjar1j821kb6gl3jw94b")))) + (build-system gnu-build-system) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("fuse" ,fuse) + ("glib" ,glib) + ("zlib" ,zlib))) + (home-page "https://sourceforge.net/projects/fuseiso/") + (synopsis "Mount ISO file system images") + (description + "FuseISO is a FUSE module to mount ISO filesystem images (.iso, .nrg, +.bin, .mdf and .img files). It currently support plain ISO9660 Level 1 and 2, +Rock Ridge, Joliet, and zisofs.") + (license license:gpl2))) + (define-public gpm (package (name "gpm") @@ -3299,7 +3335,7 @@ and copy/paste text in the console and in xterm.") (define-public btrfs-progs (package (name "btrfs-progs") - (version "4.17.1") + (version "4.20.2") (source (origin (method url-fetch) (uri (string-append "mirror://kernel.org/linux/kernel/" @@ -3307,7 +3343,7 @@ and copy/paste text in the console and in xterm.") "btrfs-progs-v" version ".tar.xz")) (sha256 (base32 - "0x6d53fbrcmzvhv461575fzsv3373427p4srz646w2wcagqk82xz")))) + "0z0fm3j4ajzsf445381ra8r3zzciyyvfh8vvbjmbyarg2rz8n3w9")))) (build-system gnu-build-system) (outputs '("out" "static")) ; static versions of the binaries in "out" @@ -3402,7 +3438,7 @@ from the btrfs-progs package. It is meant to be used in initrds.") (method url-fetch) (uri (string-append "https://git.kernel.org/cgit/linux/kernel/git/jaegeuk" - "/f2fs-tools.git/snapshot/" name "-" version ".tar.gz")) + "/f2fs-tools.git/snapshot/f2fs-tools-" version ".tar.gz")) (sha256 (base32 "1m6bn1ibq0p53m0n97il91xqgjgn2pzlz74lb5bfzassx7159m1k")))) @@ -3440,15 +3476,15 @@ disks and SD cards. This package provides the userland utilities.") (package (inherit f2fs-tools-1.7) (name "f2fs-tools") - (version "1.11.0") + (version "1.12.0") (source (origin (method url-fetch) (uri (string-append "https://git.kernel.org/cgit/linux/kernel/git/jaegeuk" - "/f2fs-tools.git/snapshot/" name "-" version ".tar.gz")) + "/f2fs-tools.git/snapshot/f2fs-tools-" version ".tar.gz")) (sha256 (base32 - "1qvr3hcic1vzfmyl7c0gnjxfsw8zjaadm66y337h49chv9yaq5mr")))) + "15pn2fm9knn7p1vzfzy6msnrdl14p6y1gn4m2ka6ba5bzx6lw4p2")))) (inputs `(("libuuid" ,util-linux))))) @@ -3490,49 +3526,51 @@ feature, and a laptop with an accelerometer. It has no effect on SSDs.") (define-public thinkfan (package (name "thinkfan") - (version "0.9.3") - (source (origin - (method url-fetch) - (uri (string-append "mirror://sourceforge/thinkfan/" - "/thinkfan-" version ".tar.gz")) - (sha256 - (base32 - "0nz4c48f0i0dljpk5y33c188dnnwg8gz82s4grfl8l64jr4n675n")) - (modules '((guix build utils))) - ;; Fix erroneous man page location in Makefile leading to - ;; a compilation failure. - (snippet '(begin - (substitute* "CMakeLists.txt" - (("thinkfan\\.1") "src/thinkfan.1")) - #t)))) + (version "1.0.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/vmatare/thinkfan.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "107vw0962hrwva3wra9n3hxlbfzg82ldc10qssv3dspja88g8psr")))) (build-system cmake-build-system) (arguments `(#:modules ((guix build cmake-build-system) (guix build utils) (srfi srfi-26)) - #:tests? #f ;no test target + #:tests? #f ; no test target #:configure-flags ;; Enable reading temperatures from hard disks via S.M.A.R.T. + ;; Upstream ‘defaults to OFF because libatasmart seems to be horribly + ;; inefficient’. `("-DUSE_ATASMART:BOOL=ON") #:phases (modify-phases %standard-phases - ;; Install scripts for various foreign init systems. Also fix - ;; hard-coded path for daemon. - (add-after 'install 'install-rc-scripts + (add-after 'unpack 'create-init-scripts + ;; CMakeLists.txt relies on build-time symptoms of OpenRC and + ;; systemd to patch and install their service files. Fake their + ;; presence rather than duplicating the build system below. Leave + ;; things like ‘/bin/kill’ because they're not worth a dependency. + ;; The sysvinit needs manual patching, but since upstream doesn't + ;; even provide the option to install it: don't. (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (files (find-files - (string-append "../thinkfan-" ,version "/rcscripts") - ".*"))) - (substitute* files - (("/usr/sbin/(\\$NAME|thinkfan)" _ name) - (string-append out "/sbin/" name))) - (for-each (cute install-file <> - (string-append out "/share/thinkfan")) - files)) - #t))))) + (let* ((out (assoc-ref outputs "out")) + (share (string-append out "/share/" ,name))) + (substitute* "CMakeLists.txt" + (("pkg_check_modules\\((OPENRC|SYSTEMD) .*" _ package) + (format "option(~a_FOUND \"Faked\" ON)\n" package)) + ;; That was easy! Now we just need to fix the destinations. + (("/etc" directory) + (string-append out directory))) + #t)))))) + (native-inputs + `(("pkg-config" ,pkg-config))) (inputs - `(("libatasmart" ,libatasmart))) + `(("libatasmart" ,libatasmart) + ("yaml-cpp" ,yaml-cpp))) (home-page "http://thinkfan.sourceforge.net/") (synopsis "Simple fan control program") (description @@ -4387,15 +4425,14 @@ re-use code and to avoid re-inventing the wheel.") (define-public libnftnl (package (name "libnftnl") - (version "1.1.1") + (version "1.1.2") (source - (origin - (method url-fetch) - (uri (string-append "mirror://netfilter.org/libnftnl/" - "libnftnl-" version ".tar.bz2")) - (sha256 - (base32 - "1wmgjfcb35mscb2srzia5931srygywrs1aznxmg67v177x0nasjx")))) + (origin + (method url-fetch) + (uri (string-append "mirror://netfilter.org/libnftnl/" + "libnftnl-" version ".tar.bz2")) + (sha256 + (base32 "0pffmsv41alsn5ac7mwnb9fh3qpwzqk13jrzn6c5i71wq6kbgix5")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -5023,7 +5060,7 @@ management tools in userspace.") (define-public xfsprogs (package (name "xfsprogs") - (version "4.19.0") + (version "4.20.0") (source (origin (method url-fetch) (uri (string-append @@ -5031,10 +5068,10 @@ management tools in userspace.") "xfsprogs-" version ".tar.gz")) (sha256 (base32 - "0gs39yiyamjw516jbak3nj4dy4h2a2g48c1mmv4wbppsccvwmwh5")))) + "0ss0r6jlxxinf9fhpc0fgf7b89n9mzirpa85xxjmi1ix9l6cls6x")))) (build-system gnu-build-system) (arguments - `(#:tests? #f)) ; Kernel/user integration tests are in package "xfstests" + `(#:tests? #f)) ; kernel/user integration tests are in package "xfstests" (native-inputs `(("gettext" ,gettext-minimal) ("util-linux" ,util-linux))) @@ -5049,17 +5086,34 @@ file systems.") (define-public genext2fs (package (name "genext2fs") - (version "1.4.1") + (version "1.4.1-4") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/jeremie-koenig/genext2fs.git") - (commit (string-append "genext2fs-" version)))) + ;; 1.4.1-3 had a VCS tag but 1.4.1-4 doesn't. + (commit "9ee43894634998b0b2b309d636f25c64314c9421"))) (file-name (git-file-name name version)) (sha256 - (base32 - "1r0n74pyypv63qfqqpvx75dwijcsvcrvqrlv8sldbhv0nwr1gk53")))) + (base32 "0ib5icn78ciz00zhc1bgdlrwaxvsdz7wnplwblng0jirwi9ml7sq")))) (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'apply-debian-patches + ;; Debian changes (the revision after ‘-’ in VERSION) are + ;; maintained as separate patches. Apply those relevant to us. + (lambda _ + (for-each + (lambda (file-name) + (invoke "patch" "-p1" "-i" + (string-append "debian/patches/" file-name))) + (list "blocksize+creator.diff" ; add -B/-o options + "byteswap_fix.diff")) + #t))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake))) (home-page "https://github.com/jeremie-koenig/genext2fs") (synopsis "Generate ext2 filesystem as a normal user") (description "This package provides a program to general an ext2 diff --git a/gnu/packages/man.scm b/gnu/packages/man.scm index fdb6e723fc..cd8522ae7e 100644 --- a/gnu/packages/man.scm +++ b/gnu/packages/man.scm @@ -241,7 +241,7 @@ automatically.") (define-public scdoc (package (name "scdoc") - (version "1.8.1") + (version "1.9.4") (source (origin (method url-fetch) @@ -250,7 +250,7 @@ automatically.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1f3qrnbjr9ikbdvpsyx726nyiz4f7ka38rimy9fvbl7kmi62w1v7")))) + "00zc3rzj97gscby31djlqyczvqpyhrl66i44czwzmmn7rc5j03m1")))) (build-system gnu-build-system) (arguments `(#:make-flags '("CC=gcc") diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index c4e9328071..d07be444d8 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1397,7 +1397,7 @@ can solve two kinds of problems: (define-public octave-cli (package (name "octave-cli") - (version "4.4.1") + (version "5.1.0") (source (origin (method url-fetch) @@ -1405,7 +1405,7 @@ can solve two kinds of problems: version ".tar.lz")) (sha256 (base32 - "0jsdgizlv02an2ppfjwk5qf209zpwi3317yb7jvlsjzxnir3lvhy")))) + "11wwxpy2q1bhxs2v41bqn05i2sb0905cj1xil6mg8l4k2kka4cq6")))) (build-system gnu-build-system) (inputs `(("lapack" ,lapack) diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm index 7885e21aa4..bb386f59d1 100644 --- a/gnu/packages/mpd.scm +++ b/gnu/packages/mpd.scm @@ -91,7 +91,7 @@ interfacing MPD in the C, C++ & Objective C languages.") (define-public mpd (package (name "mpd") - (version "0.21.4") + (version "0.21.5") (source (origin (method url-fetch) (uri @@ -100,7 +100,7 @@ interfacing MPD in the C, C++ & Objective C languages.") "/mpd-" version ".tar.xz")) (sha256 (base32 - "1ix52vfa8k8my4xyr8b0phg8605b2xchyzyva908m08vpzm14w94")))) + "1y8fbch4xp96i4mz6czivnwvaf7g8pnfix5d0pbybnkv7bmz1a9f")))) (build-system meson-build-system) (arguments `(#:configure-flags '("-Ddocumentation=true") ; The default is 'false'... diff --git a/gnu/packages/patches/rust-1.30-gdb-llvm.patch b/gnu/packages/patches/rust-1.30-gdb-llvm.patch new file mode 100644 index 0000000000..e8f0acc8b4 --- /dev/null +++ b/gnu/packages/patches/rust-1.30-gdb-llvm.patch @@ -0,0 +1,89 @@ +Tweak some gdb tests which were broken during LLVM upgrades. +This has been subsequently fixed upstream in later rustc versions, +but still needed to bootstrap some earlier versions of the compiler. + +diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/borrowed-c-style-enum.rs rustc-1.30.1-src/src/test/debuginfo/borrowed-c-style-enum.rs +--- rustc-1.30.1-src-orig/src/test/debuginfo/borrowed-c-style-enum.rs 2019-02-04 12:49:34.055483896 -0800 ++++ rustc-1.30.1-src/src/test/debuginfo/borrowed-c-style-enum.rs 2019-02-04 13:01:10.915950356 -0800 +@@ -18,15 +18,15 @@ + + // gdb-command:print *the_a_ref + // gdbg-check:$1 = TheA +-// gdbr-check:$1 = borrowed_c_style_enum::ABC::TheA ++// gdbr-check:$1 = borrowed_c_style_enum::TheA + + // gdb-command:print *the_b_ref + // gdbg-check:$2 = TheB +-// gdbr-check:$2 = borrowed_c_style_enum::ABC::TheB ++// gdbr-check:$2 = borrowed_c_style_enum::TheB + + // gdb-command:print *the_c_ref + // gdbg-check:$3 = TheC +-// gdbr-check:$3 = borrowed_c_style_enum::ABC::TheC ++// gdbr-check:$3 = borrowed_c_style_enum::TheC + + + // === LLDB TESTS ================================================================================== +diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/c-style-enum-in-composite.rs rustc-1.30.1-src/src/test/debuginfo/c-style-enum-in-composite.rs +--- rustc-1.30.1-src-orig/src/test/debuginfo/c-style-enum-in-composite.rs 2019-02-04 12:49:34.051483727 -0800 ++++ rustc-1.30.1-src/src/test/debuginfo/c-style-enum-in-composite.rs 2019-02-04 13:02:00.981997525 -0800 +@@ -19,31 +19,31 @@ + + // gdb-command:print tuple_interior_padding + // gdbg-check:$1 = {__0 = 0, __1 = OneHundred} +-// gdbr-check:$1 = (0, c_style_enum_in_composite::AnEnum::OneHundred) ++// gdbr-check:$1 = (0, c_style_enum_in_composite::OneHundred) + + // gdb-command:print tuple_padding_at_end + // gdbg-check:$2 = {__0 = {__0 = 1, __1 = OneThousand}, __1 = 2} +-// gdbr-check:$2 = ((1, c_style_enum_in_composite::AnEnum::OneThousand), 2) ++// gdbr-check:$2 = ((1, c_style_enum_in_composite::OneThousand), 2) + + // gdb-command:print tuple_different_enums + // gdbg-check:$3 = {__0 = OneThousand, __1 = MountainView, __2 = OneMillion, __3 = Vienna} +-// gdbr-check:$3 = (c_style_enum_in_composite::AnEnum::OneThousand, c_style_enum_in_composite::AnotherEnum::MountainView, c_style_enum_in_composite::AnEnum::OneMillion, c_style_enum_in_composite::AnotherEnum::Vienna) ++// gdbr-check:$3 = (c_style_enum_in_composite::OneThousand, c_style_enum_in_composite::MountainView, c_style_enum_in_composite::OneMillion, c_style_enum_in_composite::Vienna) + + // gdb-command:print padded_struct + // gdbg-check:$4 = {a = 3, b = OneMillion, c = 4, d = Toronto, e = 5} +-// gdbr-check:$4 = c_style_enum_in_composite::PaddedStruct {a: 3, b: c_style_enum_in_composite::AnEnum::OneMillion, c: 4, d: c_style_enum_in_composite::AnotherEnum::Toronto, e: 5} ++// gdbr-check:$4 = c_style_enum_in_composite::PaddedStruct {a: 3, b: c_style_enum_in_composite::OneMillion, c: 4, d: c_style_enum_in_composite::Toronto, e: 5} + + // gdb-command:print packed_struct + // gdbg-check:$5 = {a = 6, b = OneHundred, c = 7, d = Vienna, e = 8} +-// gdbr-check:$5 = c_style_enum_in_composite::PackedStruct {a: 6, b: c_style_enum_in_composite::AnEnum::OneHundred, c: 7, d: c_style_enum_in_composite::AnotherEnum::Vienna, e: 8} ++// gdbr-check:$5 = c_style_enum_in_composite::PackedStruct {a: 6, b: c_style_enum_in_composite::OneHundred, c: 7, d: c_style_enum_in_composite::Vienna, e: 8} + + // gdb-command:print non_padded_struct + // gdbg-check:$6 = {a = OneMillion, b = MountainView, c = OneThousand, d = Toronto} +-// gdbr-check:$6 = c_style_enum_in_composite::NonPaddedStruct {a: c_style_enum_in_composite::AnEnum::OneMillion, b: c_style_enum_in_composite::AnotherEnum::MountainView, c: c_style_enum_in_composite::AnEnum::OneThousand, d: c_style_enum_in_composite::AnotherEnum::Toronto} ++// gdbr-check:$6 = c_style_enum_in_composite::NonPaddedStruct {a: c_style_enum_in_composite::OneMillion, b: c_style_enum_in_composite::MountainView, c: c_style_enum_in_composite::OneThousand, d: c_style_enum_in_composite::Toronto} + + // gdb-command:print struct_with_drop + // gdbg-check:$7 = {__0 = {a = OneHundred, b = Vienna}, __1 = 9} +-// gdbr-check:$7 = (c_style_enum_in_composite::StructWithDrop {a: c_style_enum_in_composite::AnEnum::OneHundred, b: c_style_enum_in_composite::AnotherEnum::Vienna}, 9) ++// gdbr-check:$7 = (c_style_enum_in_composite::StructWithDrop {a: c_style_enum_in_composite::OneHundred, b: c_style_enum_in_composite::Vienna}, 9) + + // === LLDB TESTS ================================================================================== + +diff -r -u rustc-1.30.1-src-orig/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs rustc-1.30.1-src/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs +--- rustc-1.30.1-src-orig/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs 2019-02-04 12:49:34.043483393 -0800 ++++ rustc-1.30.1-src/src/test/debuginfo/gdb-pretty-struct-and-enums-pre-gdb-7-7.rs 2019-02-04 13:02:17.954691634 -0800 +@@ -27,15 +27,15 @@ + + // gdb-command: print c_style_enum1 + // gdbg-check:$3 = CStyleEnumVar1 +-// gdbr-check:$3 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar1 ++// gdbr-check:$3 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar1 + + // gdb-command: print c_style_enum2 + // gdbg-check:$4 = CStyleEnumVar2 +-// gdbr-check:$4 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar2 ++// gdbr-check:$4 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar2 + + // gdb-command: print c_style_enum3 + // gdbg-check:$5 = CStyleEnumVar3 +-// gdbr-check:$5 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnum::CStyleEnumVar3 ++// gdbr-check:$5 = gdb_pretty_struct_and_enums_pre_gdb_7_7::CStyleEnumVar3 + + #![allow(dead_code, unused_variables)] diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index 7a2bcfc960..978062d262 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -1647,9 +1647,8 @@ It returns to the previous working directory when the object is destroyed.") (lambda* (#:key outputs #:allow-other-keys) (copy-recursively "." (string-append (assoc-ref outputs "out") - "/plib/perl5/site_perl/" - ,(package-version perl) - "/czplib/")) + "/lib/perl5/site_perl/" + ,(package-version perl))) #t))))) (home-page "https://sourceforge.net/projects/czplib/") (synopsis "Library for genomic analysis") @@ -1751,6 +1750,27 @@ their argument and produces a string as its result. The string contains Perl code that, when \"eval\"ed, produces a deep copy of the original arguments.") (license (package-license perl)))) +(define-public perl-data-dumper + (package + (name "perl-data-dumper") + (version "2.173") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/X/XS/XSAWYERX/" + "Data-Dumper-" version ".tar.gz")) + (sha256 + (base32 + "1yknbp86md6mjlhbs1lzz6mals3iyizndgiij58qx61hjfrhhxk9")))) + (build-system perl-build-system) + (home-page "https://metacpan.org/release/Data-Dumper") + (synopsis "Convert data structures to strings") + (description "Given a list of scalars or reference variables, +@code{Data::Dumper} writes out their contents in Perl syntax. The references +can also be objects. The content of each variable is output in a single Perl +statement. It handles self-referential structures correctly.") + (license perl-license))) + (define-public perl-data-dumper-concise (package (name "perl-data-dumper-concise") diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 020152b159..dff11233e6 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -2631,14 +2631,14 @@ Server (PLS).") (define-public python-language-server (package (name "python-language-server") - (version "0.23.2") + (version "0.24.0") (source (origin (method url-fetch) (uri (pypi-uri "python-language-server" version)) (sha256 (base32 - "1h83x5widj9p630ha9yv39cpp3djxppll3iww9nc8i3hdmyrbnnh")))) + "05zmv6jr7qbgnkz0lqh5pr7kr4lm12i8ljm2k5h5kz3q9m8d4mm0")))) (build-system python-build-system) (propagated-inputs `(("python-pluggy" ,python-pluggy) @@ -8032,7 +8032,7 @@ python-xdo for newer bindings.)") `(("python-mock" ,python-mock) ("python-nose" ,python-nose) ("python-pytest" ,python-pytest))) - (home-page "http://www.makotemplates.org/") + (home-page "https://www.makotemplates.org/") (synopsis "Templating language for Python") (description "Mako is a templating language for Python that compiles templates into Python modules.") diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index 53df4cf9fc..66eb2607e6 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -13,6 +13,7 @@ ;;; Copyright © 2017, 2018, 2019 Christopher Baines <mail@cbaines.net> ;;; Copyright © 2018 Vasile Dumitrascu <va511e@yahoo.com> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> +;;; Copyright © 2019 Pierre Neidhardt <mail@ambrevar.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -4982,14 +4983,14 @@ testing libraries to build on.") (define-public ruby-rack-protection (package (name "ruby-rack-protection") - (version "2.0.3") + (version "2.0.5") (source (origin (method url-fetch) (uri (rubygems-uri "rack-protection" version)) (sha256 (base32 - "1z5598qipilmnf45428jnxi63ykrgvnyywa5ckpr52zv2vpd8jdp")))) + "15167q25rmxipqwi6hjqj3i1byi9iwl3xq9b7mdar7qiz39pmjsk")))) (build-system ruby-build-system) (arguments '(;; Tests missing from the gem. @@ -8379,3 +8380,164 @@ uniquely identify it.") serves JavaScript, CoffeeScript, CSS, LESS, Sass, and SCSS.") (home-page "https://github.com/rails/sprockets") (license license:expat))) + +(define-public ruby-mustermann + (package + (name "ruby-mustermann") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "mustermann" version)) + (sha256 + (base32 + "0lycgkmnyy0bf29nnd2zql5a6pcf8sp69g9v4xw0gcfcxgpwp7i1")))) + (build-system ruby-build-system) + (arguments + ;; No tests. + '(#:tests? #f)) + (synopsis "Library implementing patterns that behave like regular expressions") + (description "Given a string pattern, Mustermann will turn it into an +object that behaves like a regular expression and has comparable performance +characteristics.") + (home-page "https://github.com/sinatra/mustermann") + (license license:expat))) + +(define-public ruby-sinatra + (package + (name "ruby-sinatra") + (version "2.0.5") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "sinatra" version)) + (sha256 + (base32 + "1gasgn5f15myv08k10i16p326pchxjsy37pgqfw0xm66kcc5d7ry")))) + (build-system ruby-build-system) + (propagated-inputs + `(("ruby-mustermann" ,ruby-mustermann) + ("ruby-rack" ,ruby-rack) + ("ruby-rack-protection" ,ruby-rack-protection) + ("ruby-tilt" ,ruby-tilt))) + (synopsis "DSL for quick web applications creation in Ruby") + (description + "Sinatra is a DSL for quickly creating web applications in Ruby with +minimal effort.") + (home-page "http://sinatrarb.com/") + (license license:expat))) + +(define-public ruby-thin + (package + (name "ruby-thin") + (version "1.7.2") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "thin" version)) + (sha256 + (base32 + "0nagbf9pwy1vg09k6j4xqhbjjzrg5dwzvkn4ffvlj76fsn6vv61f")))) + (build-system ruby-build-system) + (arguments + ;; No tests. + '(#:tests? #f)) + (propagated-inputs + `(("ruby-daemons" ,ruby-daemons) + ("ruby-eventmachine" ,ruby-eventmachine) + ("ruby-rack" ,ruby-rack))) + (synopsis "Thin and fast web server for Ruby") + (description "Thin is a Ruby web server that glues together 3 Ruby libraries: +@itemize +@item the Mongrel parser, +@item Event Machine, a network I/O library with high scalability, performance +and stability, +@item Rack, a minimal interface between webservers and Ruby frameworks. +@end itemize\n") + (home-page "http://code.macournoyer.com/thin/") + (license license:ruby))) + +(define-public ruby-skinny + (package + (name "ruby-skinny") + (version "0.2.4") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "skinny" version)) + (sha256 + (base32 + "1y3yvx88ylgz4d2s1wskjk5rkmrcr15q3ibzp1q88qwzr5y493a9")))) + (build-system ruby-build-system) + (arguments + '(#:tests? #f ; No included tests + #:phases + (modify-phases %standard-phases + (add-before 'build 'patch-gemspec + (lambda _ + (substitute* ".gemspec" + (("<eventmachine>.freeze, \\[\\\"~> 1.0.0\"") + "<eventmachine>, [\">= 1.0.0\"") + (("<thin>.freeze, \\[\\\"< 1.7\", ") "<thin>, [")) + #t))))) + (propagated-inputs + `(("ruby-eventmachine" ,ruby-eventmachine) + ("ruby-thin" ,ruby-thin))) + (synopsis "Simple, upgradable WebSockets for Ruby Thin") + (description "Skinny is a simple, upgradable WebSockets for Ruby, using +the Thin library.") + (home-page "https://github.com/sj26/skinny") + (license license:expat))) + +(define-public mailcatcher + (package + (name "mailcatcher") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "mailcatcher" version)) + (sha256 + (base32 + "02w1ycyfv7x0sh9799lz7xa65p5qvl5z4pa8a7prb68h2zwkfq0n")))) + (build-system ruby-build-system) + (arguments + ;; Tests require web/assets which is not included in the output. We + ;; might be able to fix this by adding the Git repository to the GEM_PATH + ;; of the tests. See ruby-mysql2. + '(#:tests? #f + #:phases + (modify-phases %standard-phases + (add-before 'build 'patch-gemspec + (lambda _ + (substitute* ".gemspec" + (("<eventmachine>.freeze, \\[\\\"= 1.0.9.1") + "<eventmachine>, [\">= 1.0.9.1") + (("<rack>.freeze, \\[\\\"~> 1.5") "<rack>, [\">= 1.5") + (("<thin>.freeze, \\[\\\"~> 1.5.0") "<thin>, [\">= 1.5.0") + (("<sinatra>.freeze, \\[\\\"~> 1.2") "<sinatra>, [\">= 1.2")) + #t)) + (add-before 'build 'loosen-dependency-contraint + (lambda _ + (substitute* "lib/mail_catcher.rb" + (("\"eventmachine\", \"1.0.9.1\"") "\"eventmachine\", \">= 1.0.9.1\"") + (("\"rack\", \"~> 1.5\"") "\"rack\", \">= 1.5\"") + (("\"thin\", \"~> 1.5.0\"") "\"thin\", \">= 1.5.0\"") + (("\"sinatra\", \"~> 1.2\"") "\"sinatra\", \">= 1.2\"")) + #t))))) + (inputs + `(("ruby-eventmachine" ,ruby-eventmachine) + ("ruby-mail" ,ruby-mail) + ("ruby-rack" ,ruby-rack) + ("ruby-sinatra" ,ruby-sinatra) + ("ruby-skinny" ,ruby-skinny) + ("ruby-sqlite3" ,ruby-sqlite3) + ("ruby-thin" ,ruby-thin))) + (synopsis "SMTP server which catches messages to display them a browser") + (description + "MailCatcher runs a super simple SMTP server which catches any message +sent to it to display in a web interface. Run mailcatcher, set your favourite +app to deliver to smtp://127.0.0.1:1025 instead of your default SMTP server, +then check out http://127.0.0.1:1080 to see the mail.") + (home-page "https://mailcatcher.me") + (license license:expat))) diff --git a/gnu/packages/rust.scm b/gnu/packages/rust.scm index feadbcddba..0031aa1736 100644 --- a/gnu/packages/rust.scm +++ b/gnu/packages/rust.scm @@ -786,7 +786,7 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\" ;; The thinlto test should pass with llvm 6. (delete 'disable-thinlto-test)))))))) -(define-public rust +(define-public rust-1.29 (let ((base-rust (rust-bootstrapped-package rust-1.28 "1.29.2" "1jb787080z754caa2w3w1amsygs4qlzj9rs1vy64firfmabfg22h" @@ -795,3 +795,84 @@ jemalloc = \"" jemalloc "/lib/libjemalloc_pic.a" "\" "rust-reproducible-builds.patch")))) (package (inherit base-rust)))) + +(define-public rust-1.30 + (let ((base-rust + (rust-bootstrapped-package rust-1.29 "1.30.1" + "0aavdc1lqv0cjzbqwl5n59yd0bqdlhn0zas61ljf38yrvc18k8rn" + #:patches + '("rust-1.25-accept-more-detailed-gdb-lines.patch" + "rust-1.30-gdb-llvm.patch" + "rust-reproducible-builds.patch")))) + (package + (inherit base-rust) + (inputs + ;; Use LLVM 7.0 + (alist-replace "llvm" (list llvm) + (package-inputs base-rust))) + (arguments + (substitute-keyword-arguments (package-arguments base-rust) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'patch-cargo-tests 'patch-cargo-env-shebang + (lambda* (#:key inputs #:allow-other-keys) + (let ((coreutils (assoc-ref inputs "coreutils"))) + (substitute* "src/tools/cargo/tests/testsuite/fix.rs" + ;; Cargo has a test which explicitly sets a + ;; RUSTC_WRAPPER environment variable which points + ;; to /usr/bin/env. Since it's not a shebang, it + ;; needs to be manually patched + (("\"/usr/bin/env\"") + (string-append "\"" coreutils "/bin/env\""))) + #t))) + (add-after 'patch-cargo-env-shebang 'ignore-cargo-package-tests + (lambda* _ + (substitute* "src/tools/cargo/tests/testsuite/package.rs" + ;; These tests largely check that cargo outputs warning/error + ;; messages as expected. It seems that cargo outputs an + ;; absolute path to something in the store instead of the + ;; expected relative path (e.g. `[..]`) so we'll ignore + ;; these for now + (("fn include") "#[ignore]\nfn include") + (("fn exclude") "#[ignore]\nfn exclude")) + #t)) + ;; Appears that this test isn't currently running and has been + ;; moved elsewhere, so the patch doesn't apply. + (delete 'disable-amd64-avx-test)))))))) + +(define-public rust + (let ((base-rust + (rust-bootstrapped-package rust-1.30 "1.31.1" + "0sk84ff0cklybcp0jbbxcw7lk7mrm6kb6km5nzd6m64dy0igrlli" + #:patches + '("rust-1.25-accept-more-detailed-gdb-lines.patch" + "rust-1.30-gdb-llvm.patch" + "rust-reproducible-builds.patch")))) + (package + (inherit base-rust) + (arguments + (substitute-keyword-arguments (package-arguments base-rust) + ((#:phases phases) + `(modify-phases ,phases + (add-after 'patch-tests 'patch-command-exec-tests + (lambda* (#:key inputs #:allow-other-keys) + (let ((coreutils (assoc-ref inputs "coreutils"))) + (substitute* "src/test/run-pass/command-exec.rs" + ;; This test suite includes some tests that the stdlib's + ;; `Command` execution properly handles situations where + ;; the environment or PATH variable are empty, but this + ;; fails since we don't have `echo` available in the usual + ;; Linux directories. + ;; NB: the leading space is so we don't fail a tidy check + ;; for trailing whitespace, and the newlines are to ensure + ;; we don't exceed the 100 chars tidy check as well + ((" Command::new\\(\"echo\"\\)") + (string-append "\nCommand::new(\"" coreutils "/bin/echo\")\n"))) + #t))) + (add-after 'patch-tests 'patch-process-docs-rev-cmd + (lambda* _ + ;; Disable some doc tests which depend on the "rev" command + ;; https://github.com/rust-lang/rust/pull/58746 + (substitute* "src/libstd/process.rs" + (("```rust") "```rust,no_run")) + #t))))))))) diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm index e4f8c09016..5bb11b0400 100644 --- a/gnu/packages/syncthing.scm +++ b/gnu/packages/syncthing.scm @@ -30,7 +30,7 @@ (define-public syncthing (package (name "syncthing") - (version "1.0.1") + (version "1.1.0") (source (origin (method url-fetch) (uri (string-append "https://github.com/syncthing/syncthing" @@ -38,7 +38,7 @@ "/syncthing-source-v" version ".tar.gz")) (sha256 (base32 - "0gas07lxm5d2c21axgcs90r779rj9sk3jymnnffxz457rvpr2qn3")) + "1iks1a3149gj89yqmqa5iry2ik2sj9sjhlhc6nfh7xq4swqgsrb5")) ;; Since the update to Go 1.11, Go programs have been keeping ;; spurious references to all their dependencies: ;; <https://bugs.gnu.org/33620>. diff --git a/gnu/packages/uml.scm b/gnu/packages/uml.scm index b49a85d932..b4c9629769 100644 --- a/gnu/packages/uml.scm +++ b/gnu/packages/uml.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016 Theodoros Foradis <theodoros@foradis.org> ;;; Copyright © 2019 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,17 +30,17 @@ (define-public plantuml (package (name "plantuml") - (version "1.2019.0") + (version "1.2019.2") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/plantuml/" version "/plantuml-" version ".tar.gz")) (sha256 (base32 - "0mws7g0w3fn0wxizccg2iqisq9ljkn95i5qf8ma07lbw3nj0h48n")))) + "0hqj2crf6yg40naiwlnnym4c6r0wbz5vr8729z0daggnyg8vqniz")))) (build-system ant-build-system) (arguments - `(#:tests? #f ; no tests + `(#:tests? #f ; no tests #:build-target "dist" #:phases (modify-phases %standard-phases diff --git a/gnu/packages/valgrind.scm b/gnu/packages/valgrind.scm index 6c06b24c1c..0a6206b3b1 100644 --- a/gnu/packages/valgrind.scm +++ b/gnu/packages/valgrind.scm @@ -35,13 +35,15 @@ (version "3.13.0") (source (origin (method url-fetch) - (uri (string-append "ftp://sourceware.org/pub/valgrind/valgrind-" - version ".tar.bz2")) - (sha256 - (base32 - "0fqc3684grrbxwsic1rc5ryxzxmigzjx9p5vf3lxa37h0gpq0rnp")) - (patches (search-patches "valgrind-enable-arm.patch" - "valgrind-glibc-compat.patch")))) + (uri (list (string-append "http://www.valgrind.org/downloads" + "/valgrind-" version ".tar.bz2") + (string-append "ftp://sourceware.org/pub/valgrind" + "/valgrind-" version ".tar.bz2"))) + (sha256 + (base32 + "0fqc3684grrbxwsic1rc5ryxzxmigzjx9p5vf3lxa37h0gpq0rnp")) + (patches (search-patches "valgrind-enable-arm.patch" + "valgrind-glibc-compat.patch")))) (build-system gnu-build-system) (outputs '("doc" ;16 MB "out")) diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 9a29272de7..3a5a05528d 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -33,6 +33,7 @@ ;;; Copyright © 2018 Gábor Boskovit <boskovits@gmail.com> ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2019 Timo Eisenmann <eisenmann@fn.de> +;;; Copyright © 2019 Arne Babenhauserheide <arne_bab@web.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -240,6 +241,43 @@ A/52 standard is used in a variety of applications, including digital television and DVD. It is also known as AC-3.") (license license:gpl2+))) +(define-public libaom + ;; The 1.0.0-errata1 release installs a broken pkg-config .pc file. This + ;; is fixed in libaom commit 0ddc150, but we use an even later commit. + (let ((commit "22b150bf040608028a56d8bf39e72f771383d836") + (revision "0")) + (package + (name "libaom") + (version (git-version "1.0.0-errata1" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://aomedia.googlesource.com/aom/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1pdd5h3n42607n6qmggz4yv8izhjr2kl6knb3kh7gh4v0vy47h1r")))) + (build-system cmake-build-system) + (native-inputs + `(("perl" ,perl) + ("pkg-config" ,pkg-config) + ("python" ,python))) ; to detect the version + (arguments + `(#:tests? #f ;no check target + #:configure-flags + ;; build dynamic library + (list "-DBUILD_SHARED_LIBS=YES" + "-DENABLE_PIC=TRUE" + "-DAOM_TARGET_CPU=generic" + (string-append "-DCMAKE_INSTALL_PREFIX=" + (assoc-ref %outputs "out"))))) + (home-page "https://aomedia.googlesource.com/aom/") + (synopsis "AV1 video codec") + (description "Libaom is the reference implementation of AV1. It includes +a shared library and encoder and decoder command-line executables.") + (license license:bsd-2)))) + (define-public libmpeg2 (package (name "libmpeg2") @@ -707,6 +745,7 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).") ("opus" ,opus) ("ladspa" ,ladspa) ("lame" ,lame) + ("libaom" ,libaom) ("libass" ,libass) ("libbluray" ,libbluray) ("libcaca" ,libcaca) @@ -793,6 +832,7 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).") "--enable-fontconfig" "--enable-gnutls" "--enable-ladspa" + "--enable-libaom" "--enable-libass" "--enable-libbluray" "--enable-libcaca" @@ -875,7 +915,13 @@ audio/video codec library.") version ".tar.xz")) (sha256 (base32 - "0b59qk5wpc5ksiha76jbhb859g5gxa4w0k6afh3kgvgajiivs73l")))))) + "0b59qk5wpc5ksiha76jbhb859g5gxa4w0k6afh3kgvgajiivs73l")))) + (arguments + (substitute-keyword-arguments (package-arguments ffmpeg) + ((#:configure-flags flags) + `(delete "--enable-libaom" ,flags)))) + (inputs (alist-delete "libaom" + (package-inputs ffmpeg))))) (define-public ffmpeg-for-stepmania (hidden-package @@ -1366,7 +1412,7 @@ access to mpv's powerful playback capabilities.") (define-public youtube-dl (package (name "youtube-dl") - (version "2019.02.18") + (version "2019.03.01") (source (origin (method url-fetch) (uri (string-append "https://github.com/rg3/youtube-dl/releases/" @@ -1374,7 +1420,7 @@ access to mpv's powerful playback capabilities.") version ".tar.gz")) (sha256 (base32 - "1sr0f6ixpaqyp3cf29zswx84y3nfabwnk3sljcgvgnmjp73zzfv1")))) + "0bxk6adyppdv50jnp5cika8wc6wfgd6d8zbg1njgmcs1pxskllmf")))) (build-system python-build-system) (arguments ;; The problem here is that the directory for the man page and completion @@ -1485,7 +1531,7 @@ other site that youtube-dl supports.") (define-public you-get (package (name "you-get") - (version "0.4.1210") + (version "0.4.1256") (source (origin (method git-fetch) (uri (git-reference @@ -1494,7 +1540,7 @@ other site that youtube-dl supports.") (file-name (git-file-name name version)) (sha256 (base32 - "1plw518hzpzzcr38phlnsbpq7aqnps8iwrgr68f6d41rppl1qb25")))) + "1hzr7ha1jvbc0v2bwl7s08ymwdmvb0f2jz4xp1fi6agq5y3ca1iv")))) (build-system python-build-system) (inputs `(("ffmpeg" ,ffmpeg))) ; for multi-part and >=1080p videos @@ -3319,15 +3365,20 @@ transitions, and effects and then export your film to many common formats.") (define-public dav1d (package (name "dav1d") - (version "0.1.0") + (version "0.2.0") (source (origin (method url-fetch) - (uri (string-append "https://downloads.videolan.org/pub/videolan/" - "dav1d/" version "/dav1d-" version ".tar.xz")) + (uri (list ;; The canonical download site + (string-append "https://downloads.videolan.org/pub/videolan/" + "dav1d/" version "/dav1d-" version ".tar.xz") + + ;; Auto-generated tarballs from the Git repo? + (string-append "https://code.videolan.org/videolan/dav1d/-/" + "archive/" version "/dav1d-" version ".tar.bz2"))) (sha256 (base32 - "0dw0liday8cbyrirhm6bgzhxg4cdy66nspfkdlq338gdsfqcvrsc")))) + "0q0dbbl91syjnkygz268gh4b7mdcgl6hldj300a4cbqidsadpl5p")))) (build-system meson-build-system) (native-inputs `(("nasm" ,nasm))) (home-page "https://code.videolan.org/videolan/dav1d") diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index 47e24460f9..5b5d5a518a 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -354,7 +354,7 @@ all common programming languages. Vala bindings are also provided.") (define-public lxc (package (name "lxc") - (version "3.0.2") + (version "3.1.0") (source (origin (method url-fetch) (uri (string-append @@ -362,7 +362,7 @@ all common programming languages. Vala bindings are also provided.") version ".tar.gz")) (sha256 (base32 - "0p1gy553cm4mhwxi85fl6qiwz61rjmvysm8c8pd20qh62xxi3dva")))) + "1igxqgx8q9cp15mcp1y8j564bl85ijw04jcmgb1s5bmfbg1751sd")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -372,9 +372,11 @@ all common programming languages. Vala bindings are also provided.") ("libseccomp" ,libseccomp) ("libselinux" ,libselinux))) (arguments - '(#:configure-flags - '("--sysconfdir=/etc" - "--localstatedir=/var") + `(#:configure-flags + (list (string-append "--docdir=" (assoc-ref %outputs "out") + "/share/doc/" ,name "-" ,version) + "--sysconfdir=/etc" + "--localstatedir=/var") #:phases (modify-phases %standard-phases (replace 'install diff --git a/gnu/packages/vulkan.scm b/gnu/packages/vulkan.scm index cdbac2f35c..787b4a388a 100644 --- a/gnu/packages/vulkan.scm +++ b/gnu/packages/vulkan.scm @@ -32,6 +32,7 @@ #:use-module (gnu packages check) #:use-module (gnu packages cmake) #:use-module (gnu packages freedesktop) + #:use-module (gnu packages gcc) #:use-module (gnu packages gettext) #:use-module (gnu packages gl) #:use-module (gnu packages pkg-config) @@ -42,8 +43,8 @@ (define-public spirv-headers ;; Keep updated in accordance with ;; https://github.com/google/shaderc/blob/known-good/known_good.json - (let ((commit "3ce3e49d73b8abbf2ffe33f829f941fb2a40f552") - (revision "3")) + (let ((commit "8bea0a266ac9b718aa0818d9e3a47c0b77c2cb23") + (revision "4")) (package (name "spirv-headers") (version (string-append "0.0-" revision "." (string-take commit 9))) @@ -55,7 +56,7 @@ (commit commit))) (sha256 (base32 - "0yk4bzqifdqpmdxkhvrxbdqhf5ngkga0ig1yyz7khr7rklqfz7wp")) + "01qyjghjz42hmyw9111zz20a1paf37ps39p4xbj8abjba65d8lqx")) (file-name (string-append name "-" version "-checkout")))) (build-system cmake-build-system) (arguments @@ -83,82 +84,81 @@ and for the GLSL.std.450 extended instruction set. commit "/LICENSE")))))) (define-public spirv-tools - ;; Keep updated in accordance with - ;; https://github.com/google/shaderc/blob/known-good/known_good.json - (let ((commit "fe2fbee294a8ad4434f828a8b4d99eafe9aac88c") - (revision "2")) - (package - (name "spirv-tools") - (version (string-append "0.0-" revision "." (string-take commit 9))) - (source - (origin + (package + (name "spirv-tools") + (version "2019.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/KhronosGroup/SPIRV-Tools") + (commit (string-append "v" version)))) + (sha256 + (base32 + "0vddjzhkrhrm3l3i57nxmq2smv3r1s0ka5ff2kziaahr4hqb479r")) + (file-name (string-append name "-" version "-checkout")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; FIXME: Tests fail. + #:phases + (modify-phases %standard-phases + (add-before 'configure 'fixgcc7 + (lambda _ + (unsetenv "C_INCLUDE_PATH") + (unsetenv "CPLUS_INCLUDE_PATH") + #t))) + #:configure-flags (list (string-append "-DSPIRV-Headers_SOURCE_DIR=" + (assoc-ref %build-inputs "spirv-headers"))))) + (inputs `(("spirv-headers" ,spirv-headers))) + (native-inputs `(("gcc" ,gcc-7) + ("pkg-config" ,pkg-config) + ("python" ,python))) + (home-page "https://github.com/KhronosGroup/SPIRV-Tools") + (synopsis "API and commands for processing SPIR-V modules") + (description + "The SPIR-V Tools project provides an API and commands for processing +SPIR-V modules. The project includes an assembler, binary module +parser,disassembler, validator, and optimizer for SPIR-V.") + (license license:asl2.0))) + +(define-public glslang + (package + (name "glslang") + (version "7.11.3113") + (source + (origin (method git-fetch) (uri (git-reference - (url "https://github.com/KhronosGroup/SPIRV-Tools") - (commit commit))) + (url "https://github.com/KhronosGroup/glslang") + (commit version))) (sha256 (base32 - "03rq4ypwqnz34n8ip85n95a3b9rxb34j26azzm3b3invaqchv19x")) + "1kzv2b4q1fddxd7c0hc754nd6rw6y9vijb9fsi13xzzq9dficgb6")) (file-name (string-append name "-" version "-checkout")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ; FIXME: Tests fail. - #:configure-flags (list (string-append "-DSPIRV-Headers_SOURCE_DIR=" - (assoc-ref %build-inputs - "spirv-headers"))))) - (inputs `(("spirv-headers" ,spirv-headers))) - (native-inputs `(("pkg-config" ,pkg-config) - ("python" ,python))) - (home-page "https://github.com/KhronosGroup/SPIRV-Tools") - (synopsis "API and commands for processing SPIR-V modules") - (description - "The SPIR-V Tools project provides an API and commands for processing -SPIR-V modules. The project includes an assembler, binary module parser, -disassembler, validator, and optimizer for SPIR-V.") - (license license:asl2.0)))) - -(define-public glslang - ;; Keep updated in accordance with - ;; https://github.com/google/shaderc/blob/known-good/known_good.json - (let ((commit "32d3ec319909fcad0b2b308fe1635198773e8316") - (revision "3")) - (package - (name "glslang") - (version (string-append "3.0-" revision "." (string-take commit 9))) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/KhronosGroup/glslang") - (commit commit))) - (sha256 - (base32 - "1kmgjv5kbrjy6azpgwnjcn3cj8vg5i8hnyk3m969sc0gq2j1rbjj")) - (file-name (string-append name "-" version "-checkout")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #f ;; No tests - ;; glslang tries to set CMAKE_INSTALL_PREFIX manually. Remove the - ;; offending line. - #:phases (modify-phases %standard-phases - (add-after 'patch-source-shebangs 'fix-cmakelists - (lambda _ - (substitute* "CMakeLists.txt" - (("set.*CMAKE_INSTALL_PREFIX.*") "")) - #t))))) - (native-inputs `(("bison" ,bison) - ("pkg-config" ,pkg-config))) - (home-page "https://github.com/KhronosGroup/glslang") - (synopsis "OpenGL and OpenGL ES shader front end and validator") - (description - "Glslang is the official reference compiler front end for the + (build-system cmake-build-system) + (arguments + `(#:tests? #f ;; No tests + ;; glslang tries to set CMAKE_INSTALL_PREFIX manually. Remove the + ;; offending line. + #:phases (modify-phases %standard-phases + (add-after 'patch-source-shebangs 'fix-cmakelists + (lambda _ + (substitute* "CMakeLists.txt" + (("set.*CMAKE_INSTALL_PREFIX.*") "")) + #t))))) + (native-inputs `(("bison" ,bison) + ("pkg-config" ,pkg-config))) + (home-page "https://github.com/KhronosGroup/glslang") + (synopsis "OpenGL and OpenGL ES shader front end and validator") + (description + "Glslang is the official reference compiler front end for the OpenGL@tie{}ES and OpenGL shading languages. It implements a strict interpretation of the specifications for these languages.") - ;; Modified BSD license. See "copyright" section of - ;; https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/ - (license (list license:bsd-3 - ;; include/SPIRV/{bitutils,hex_float}.h are Apache 2.0. - license:asl2.0))))) + ;; Modified BSD license. See "copyright" section of + ;; https://www.khronos.org/opengles/sdk/tools/Reference-Compiler/ + (license (list license:bsd-3 + ;; include/SPIRV/{bitutils,hex_float}.h are Apache 2.0. + license:asl2.0)))) (define-public vulkan-headers (package @@ -281,75 +281,73 @@ API.") (license (list license:asl2.0)))) ;LICENSE.txt (define-public shaderc - (let ((commit "be8e0879750303a1de09385465d6b20ecb8b380d") - (revision "2")) - (package - (name "shaderc") - (version (git-version "0.0.0" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/google/shaderc") - (commit commit))) - (file-name (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "16p25ry2i4zrj00zihfpf210f8xd7g398ffbw25igvi9mbn4nbfd")))) - (build-system meson-build-system) - (arguments - `(#:tests? #f ; FIXME: Tests fail. - #:phases - (modify-phases %standard-phases - (replace 'configure - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - ;; Remove various lines and touch build-version.inc or - ;; configuring won't work. - (invoke "touch" "glslc/src/build-version.inc") - (substitute* "CMakeLists.txt" (("..PYTHON_EXE..*") "")) - (substitute* "CMakeLists.txt" - ((".*update_build_version.py..*") "")) - (substitute* "CMakeLists.txt" - ((".*add_custom_target.build-version.*") "")) - (substitute* "CMakeLists.txt" - ((".*spirv-tools_SOURCE_DIR.*glslang_SOURCE_DIR.*") - "")) - (substitute* "CMakeLists.txt" - ((".*Update build-version.inc.*") "")) - (substitute* "CMakeLists.txt" ((".*--check.*") "")) - (substitute* "glslc/src/main.cc" ((".*build-version.inc.*") - "\"1\"")) - (invoke "cmake" "-GNinja" "-DCMAKE_BUILD_TYPE=Release" - "-DSHADERC_SKIP_TESTS=ON" - "-DCMAKE_INSTALL_LIBDIR=lib" - (string-append "-DCMAKE_INSTALL_PREFIX=" - out))))) - (add-after 'unpack 'unpack-sources - (lambda* (#:key inputs #:allow-other-keys) - (let ((spirv-tools-source (assoc-ref inputs "spirv-tools-source")) - (spirv-headers-source (assoc-ref inputs "spirv-headers-source")) - (glslang-source (assoc-ref inputs "glslang-source"))) - (copy-recursively spirv-tools-source "third_party/spirv-tools") - (copy-recursively spirv-headers-source - (string-append "third_party/spirv-tools" - "/external/spirv-headers")) - (copy-recursively glslang-source "third_party/glslang") - #t)))))) - (inputs - `(("googletest" ,googletest) - ("python" ,python))) - (native-inputs - `(("cmake" ,cmake) - ("glslang-source" ,(package-source glslang)) - ("pkg-config" ,pkg-config) - ("spirv-headers-source" ,(package-source spirv-headers)) - ("spirv-tools-source" ,(package-source spirv-tools)))) - (home-page "https://github.com/google/shaderc") - (synopsis "Tools for shader compilation") - (description "Shaderc is a collection of tools, libraries, and tests for + (package + (name "shaderc") + (version "2018.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/google/shaderc") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0qigmj0riw43pgjn5f6kpvk72fajssz1lc2aiqib5qvmj9rqq3hl")))) + (build-system meson-build-system) + (arguments + `(#:tests? #f ; FIXME: Tests fail. + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + ;; Remove various lines and touch build-version.inc or + ;; configuring won't work. + (invoke "touch" "glslc/src/build-version.inc") + (substitute* "CMakeLists.txt" (("..PYTHON_EXE..*") "")) + (substitute* "CMakeLists.txt" + ((".*update_build_version.py..*") "")) + (substitute* "CMakeLists.txt" + ((".*add_custom_target.build-version.*") "")) + (substitute* "CMakeLists.txt" + ((".*spirv-tools_SOURCE_DIR.*glslang_SOURCE_DIR.*") + "")) + (substitute* "CMakeLists.txt" + ((".*Update build-version.inc.*") "")) + (substitute* "CMakeLists.txt" ((".*--check.*") "")) + (substitute* "glslc/src/main.cc" ((".*build-version.inc.*") + "\"1\"")) + (invoke "cmake" "-GNinja" "-DCMAKE_BUILD_TYPE=Release" + "-DSHADERC_SKIP_TESTS=ON" + "-DCMAKE_INSTALL_LIBDIR=lib" + (string-append "-DCMAKE_INSTALL_PREFIX=" + out))))) + (add-after 'unpack 'unpack-sources + (lambda* (#:key inputs #:allow-other-keys) + (let ((spirv-tools-source (assoc-ref inputs "spirv-tools-source")) + (spirv-headers-source (assoc-ref inputs "spirv-headers-source")) + (glslang-source (assoc-ref inputs "glslang-source"))) + (copy-recursively spirv-tools-source "third_party/spirv-tools") + (copy-recursively spirv-headers-source + (string-append "third_party/spirv-tools" + "/external/spirv-headers")) + (copy-recursively glslang-source "third_party/glslang") + #t)))))) + (inputs + `(("googletest" ,googletest) + ("python" ,python))) + (native-inputs + `(("cmake" ,cmake) + ("glslang-source" ,(package-source glslang)) + ("pkg-config" ,pkg-config) + ("spirv-headers-source" ,(package-source spirv-headers)) + ("spirv-tools-source" ,(package-source spirv-tools)))) + (home-page "https://github.com/google/shaderc") + (synopsis "Tools for shader compilation") + (description "Shaderc is a collection of tools, libraries, and tests for shader compilation.") - (license license:asl2.0)))) + (license license:asl2.0))) (define-public vkd3d (let ((commit "ecda316ef54d70bf1b3e860755241bb75873e53f")) ; Release 1.1. diff --git a/gnu/packages/wget.scm b/gnu/packages/wget.scm index 49bc6ecea7..128041318b 100644 --- a/gnu/packages/wget.scm +++ b/gnu/packages/wget.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org> ;;; Copyright © 2014, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; @@ -111,48 +111,60 @@ online pastebin services.") (define-public wget2 (package (name "wget2") - (version "1.0.0") + (version "1.99.1") (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://gitlab.com/gnuwget/wget2.git") - (commit "b45709d3d21714135ce79df6abbdcb704684063d") - (recursive? #t))) ;; Needed for 'gnulib' git submodule. - (file-name (string-append name "-" version "-checkout")) - (sha256 - (base32 - "0ww84wwzmpyylkz8rnb6nk6f7x040132z81x52w7rjhk68p9mm24")))) + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/gnuwget/wget2.git") + (commit (string-append name "-" version)) + (recursive? #t))) ;; Needed for 'gnulib' git submodule. + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 + "15wxsnjhc6bzk7f60i1djmsarh1w31gwi5h2gh9k19ncwypfj5dm")))) (build-system gnu-build-system) (arguments - `(#:phases (modify-phases %standard-phases - (replace 'bootstrap - (lambda _ - ;; Make sure all the files are writable so that ./bootstrap - ;; can proceed. - (for-each (lambda (file) - (chmod file #o755)) - (find-files ".")) - (substitute* "./gnulib/gnulib-tool.py" - (("/usr/bin/python") (which "python3"))) - (invoke "sh" "./bootstrap" - "--gnulib-srcdir=gnulib" - "--no-git")))))) - (inputs `(("autoconf" ,autoconf) - ("automake" ,automake) - ("doxygen" ,doxygen) - ("flex" ,flex) - ("gettext" ,gettext-minimal) - ("gnutls" ,gnutls/dane) - ("libiconv" ,libiconv) - ("libidn2" ,libidn2) - ("libmicrohttpd" ,libmicrohttpd) - ("libpsl" ,libpsl) - ("libtool" ,libtool) - ("pcre2" ,pcre2) - ("python" ,python))) + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-network-test + (lambda _ + (substitute* "tests/Makefile.am" + (("test-auth-digest\\$\\(EXEEXT)") "")) + #t)) + (replace 'bootstrap + (lambda _ + ;; Make sure all the files are writable so that ./bootstrap + ;; can proceed. + (for-each (lambda (file) + (chmod file #o755)) + (find-files ".")) + (patch-shebang "./gnulib/gnulib-tool.py") + ;; Remove unnecessary inputs from bootstrap.conf + (substitute* "bootstrap.conf" + (("flex.*") "") + (("makeinfo.*") "") + (("lzip.*") "") + (("rsync.*") "")) + (invoke "sh" "./bootstrap" + "--gnulib-srcdir=gnulib" + "--no-git")))))) + (inputs + `(("gnutls" ,gnutls/dane) + ("libiconv" ,libiconv) + ("libidn2" ,libidn2) + ("libmicrohttpd" ,libmicrohttpd) + ("libpsl" ,libpsl) + ("pcre2" ,pcre2))) ;; TODO: Add libbrotlidec, libnghttp2. - (native-inputs `(("pkg-config" ,pkg-config))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("flex" ,flex) + ("gettext" ,gettext-minimal) + ("libtool" ,libtool) + ("pkg-config" ,pkg-config) + ("python" ,python-2))) (home-page "https://gitlab.com/gnuwget/wget2") (synopsis "Successor of GNU Wget") (description "GNU Wget2 is the successor of GNU Wget, a file and recursive diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index a79b4d473f..c809bb2adc 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -5663,14 +5663,14 @@ The XCB util-wm module provides the following libraries: (define-public xinit (package (name "xinit") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (string-append "mirror://xorg/individual/app/xinit-" version ".tar.bz2")) (sha256 (base32 - "1vw2wlg74ig52naw0cha3pgzcwwk25l834j42cg8m5zmybp3a213")))) + "1fdbakx59vyh474skjydj1bbglpby3y03nl7mxn0z9v8gdhqz6yy")))) (build-system gnu-build-system) (inputs `(("xorgproto" ,xorgproto) |