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authorRicardo Wurmus <rekado@elephly.net>2018-11-08 09:54:22 +0100
committerRicardo Wurmus <rekado@elephly.net>2018-11-08 09:54:22 +0100
commita9542937c8361b3aabda482bfdb40b07d92fba86 (patch)
tree76ff4ef62aaa24b4e01b2300fdfa875eb0597e2c /gnu/packages
parent9f527c91990c4f620c88bb609e95589809a1354c (diff)
downloadguix-a9542937c8361b3aabda482bfdb40b07d92fba86.tar.gz
gnu: seek: Use INVOKE.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T
unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
Diffstat (limited to 'gnu/packages')
-rw-r--r--gnu/packages/bioinformatics.scm25
1 files changed, 14 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c175227997..1ceb40cb95 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -5057,21 +5057,24 @@ distribution, coverage uniformity, strand specificity, etc.")
            (modify-phases %standard-phases
              (replace 'bootstrap
                (lambda _
-                 (invoke "bash" "gen_auto")))
+                 (substitute* "gen_tools_am"
+                   (("/usr/bin/env.*") (which "perl")))
+                 (invoke "bash" "gen_auto")
+                 #t))
              (add-after 'build 'build-additional-tools
                (lambda* (#:key make-flags #:allow-other-keys)
-                 (every (lambda (dir)
-                          (with-directory-excursion (string-append "tools/" dir)
-                            (zero? (apply system* "make" make-flags))))
-                        dirs)))
+                 (for-each (lambda (dir)
+                             (with-directory-excursion (string-append "tools/" dir)
+                               (apply invoke "make" make-flags)))
+                           dirs)
+                 #t))
              (add-after 'install 'install-additional-tools
                (lambda* (#:key make-flags #:allow-other-keys)
-                 (fold (lambda (dir result)
-                         (with-directory-excursion (string-append "tools/" dir)
-                           (and result
-                                (zero? (apply system*
-                                              `("make" ,@make-flags "install"))))))
-                       #t dirs)))))))
+                 (for-each (lambda (dir)
+                             (with-directory-excursion (string-append "tools/" dir)
+                               (apply invoke `("make" ,@make-flags "install"))))
+                           dirs)
+                 #t))))))
       (inputs
        `(("gsl" ,gsl)
          ("boost" ,boost)