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| author | Navid Afkhami <navid.afkhami@mdc-berlin.de> | 2024-11-08 14:48:18 +0000 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2024-11-11 10:43:58 +0100 |
| commit | 6e19a94d5a5abd414544cba017b66799a3674a5a (patch) | |
| tree | 37bf3d784c9afccf9161bb267cae682963aa5dea /gnu | |
| parent | 9821e967b07ebd70d76ad1f528722c86ab0dd3c4 (diff) | |
| download | guix-6e19a94d5a5abd414544cba017b66799a3674a5a.tar.gz | |
gnu: Add python-harmonypy.
* gnu/packages/bioinformatics.scm (python-harmonypy): New variable. Change-Id: Iad8be627099858776163fccfeb27c08129e6fb75 Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 35ff96ce42..35b0cef0bd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -2397,6 +2397,32 @@ demultiplexing step.") from single-cell RNA-sequencing.") (license license:expat))) +(define-public python-harmonypy + (package + (name "python-harmonypy") + (version "0.0.10") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/slowkow/harmonypy") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "15lxgncrnsx1hapfx78pvx4rjx5d48hqixdnacdy55d84myfmrym")))) + (build-system pyproject-build-system) + (propagated-inputs (list python-numpy + python-pandas + python-scikit-learn + python-scipy)) + (native-inputs (list python-hatchling python-pytest)) + (home-page "https://github.com/slowkow/harmonypy") + (synopsis "Data integration algorithm") + (description + "Harmony is an algorithm for integrating multiple high-dimensional +datasets with fuzzy k-means and locally linear adjustments.") + (license license:gpl2))) + (define-public python-hclust2 (package (name "python-hclust2") |