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authorRicardo Wurmus <rekado@elephly.net>2018-06-05 11:14:38 +0200
committerRicardo Wurmus <rekado@elephly.net>2018-06-05 11:14:38 +0200
commite847f402c1b7d5ae6a2e42749616d1b83d0004fd (patch)
treefc4c083db5ed28cc84beb38ccfe2e8a152680e7e /gnu
parentd7e6fb6d7ebdd5b700b2a89b3902904fe459abdf (diff)
downloadguix-e847f402c1b7d5ae6a2e42749616d1b83d0004fd.tar.gz
gnu: java-picard-2.10.3: Delete failing build phase.
* gnu/packages/bioinformatics.scm (java-picard-2.10.3)[arguments]: Delete
generate-jar-indices phase.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioinformatics.scm2
1 files changed, 2 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 57e2f00a99..b2a4ab2f8f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3211,6 +3211,8 @@ VCF.")
                   (sxml xpath))
        #:phases
        (modify-phases %standard-phases
+         ;; FIXME: this phase fails with "duplicate entry: htsjdk/samtools/AbstractBAMFileIndex$1.class"
+         (delete 'generate-jar-indices)
          (add-after 'unpack 'remove-useless-build.xml
            (lambda _ (delete-file "build.xml") #t))
          ;; This is necessary to ensure that htsjdk is found when using