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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-05-02 11:37:34 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-05-02 15:23:50 +0200
commit7494f4b4ab94504ac1c8ac71d53ab6ab9c552da1 (patch)
treef35922f1da23e3b4c665099ae0b6d9bc406dfc09 /gnu
parent9c19db8c1d848412697b0b47ff6e878248de1944 (diff)
downloadguix-7494f4b4ab94504ac1c8ac71d53ab6ab9c552da1.tar.gz
gnu: Add r-agimicrorna.
* gnu/packages/bioconductor.scm (r-agimicrorna): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm30
1 files changed, 30 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2db0ab3752..80cf28c954 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1944,6 +1944,36 @@ time drift and quantifies level mass spectral peaks from @dfn{first stage of
 mass spectrometry} (MS1) data.")
     (license license:artistic2.0)))
 
+(define-public r-agimicrorna
+  (package
+    (name "r-agimicrorna")
+    (version "2.46.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "AgiMicroRna" version))
+              (sha256
+               (base32
+                "0jic89gyphbv7jzlfgm9bh1aq48lp86rq6hr34gsg9z0pa1192xa"))))
+    (properties `((upstream-name . "AgiMicroRna")))
+    (build-system r-build-system)
+    (propagated-inputs
+     (list r-affy
+           r-affycoretools
+           r-biobase
+           r-limma
+           r-preprocesscore))
+    (home-page "https://git.bioconductor.org/packages/AgiMicroRna")
+    (synopsis
+     "Processing and differential expression analysis of Agilent microRNA chips")
+    (description
+     "@code{AgiMicroRna} provides useful functionality for the processing,
+quality assessment and differential expression analysis of Agilent microRNA
+array data.  The package uses a limma-like structure to generate the processed
+data in order to make statistical inferences about differential expression
+using the linear model features implemented in limma.  Standard Bioconductor
+objects are used so that other packages could be used as well.")
+    (license license:gpl3)))
+
 (define-public r-aneufinder
   (package
     (name "r-aneufinder")