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| author | Ricardo Wurmus <rekado@elephly.net> | 2022-12-22 10:25:09 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2022-12-22 10:29:20 +0100 |
| commit | 2a4930a1e6d15a835bcd3db016ce09b197efe372 (patch) | |
| tree | bc123579779d4ad9054e74cf0fb1391835169df1 /gnu | |
| parent | 7c2dab7dd459bd596e127630fc9603ff87cb7cfd (diff) | |
| download | guix-2a4930a1e6d15a835bcd3db016ce09b197efe372.tar.gz | |
gnu: Add wiggletools.
* gnu/packages/bioinformatics.scm (wiggletools): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 41 |
1 files changed, 41 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 160c44df98..b2c4f98531 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -17637,6 +17637,47 @@ module capable of computing base-level alignments for very large sequences.") (home-page "https://github.com/ekg/wfmash") (license license:expat))) +(define-public wiggletools + (package + (name "wiggletools") + (version "1.2.11") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Ensembl/WiggleTools/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1g3qla4l1g583nzlgyww5jqxpq87ndpn9cmjls098bgqjyn5292q")))) + (build-system gnu-build-system) + (arguments + (list + ;; Tests require internet access + #:tests? #false + #:make-flags + #~(list "Wiggletools" + (string-append "CC=" #$(cc-for-target))) + #:phases + #~(modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda _ + (install-file "bin/wiggletools" + (string-append #$output "/bin"))))))) + (inputs + (list curl ; XXX: needed by libbigwig + htslib libbigwig gsl xz zlib)) + (home-page "https://github.com/Ensembl/WiggleTools/") + (synopsis "Operations on the space of numerical functions defined on the genome") + (description "The WiggleTools package allows genomewide data files to be +manipulated as numerical functions, equipped with all the standard functional +analysis operators (sum, product, product by a scalar, comparators), and +derived statistics (mean, median, variance, stddev, t-test, Wilcoxon's rank +sum test, etc).") + (license license:asl2.0))) + (define-public flair (package (name "flair") |