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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2016-10-12 17:12:45 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2016-10-17 18:09:20 +0200 |
| commit | 509372970408584d769d0152bdaececccba753e4 (patch) | |
| tree | 761911669c0f43a557ac2b9eb5ecbf6641766215 /gnu | |
| parent | 89984be46e7714bc1b29fe04035964dfef3dec7e (diff) | |
| download | guix-509372970408584d769d0152bdaececccba753e4.tar.gz | |
gnu: Add rcas-web.
* gnu/packages/bioinformatics.scm (rcas-web): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 49d8ca9d27..43faaa078f 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -56,6 +56,7 @@ #:use-module (gnu packages gtk) #:use-module (gnu packages glib) #:use-module (gnu packages groff) + #:use-module (gnu packages guile) #:use-module (gnu packages haskell) #:use-module (gnu packages image) #:use-module (gnu packages imagemagick) @@ -7184,6 +7185,50 @@ library implementing most of the pipeline's features.") (home-page "https://github.com/BIMSBbioinfo/RCAS") (license license:expat))) +(define-public rcas-web + (package + (name "rcas-web") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/BIMSBbioinfo/rcas-web/" + "releases/download/v" version + "/rcas-web-" version ".tar.gz")) + (sha256 + (base32 + "0d3my0g8i7js59n184zzzjdki7hgmhpi4rhfvk7i6jsw01ba04qq")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'wrap-executable + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (json (assoc-ref inputs "guile-json")) + (redis (assoc-ref inputs "guile-redis")) + (path (string-append + json "/share/guile/site/2.2:" + redis "/share/guile/site/2.2"))) + (wrap-program (string-append out "/bin/rcas-web") + `("GUILE_LOAD_PATH" ":" = (,path)) + `("GUILE_LOAD_COMPILED_PATH" ":" = (,path)) + `("R_LIBS_SITE" ":" = (,(getenv "R_LIBS_SITE"))))) + #t))))) + (inputs + `(("r" ,r) + ("r-rcas" ,r-rcas) + ("guile-next" ,guile-next) + ("guile-json" ,guile2.2-json) + ("guile-redis" ,guile2.2-redis))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/BIMSBbioinfo/rcas-web") + (synopsis "Web interface for RNA-centric annotation system (RCAS)") + (description "This package provides a simple web interface for the +@dfn{RNA-centric annotation system} (RCAS).") + (license license:agpl3+))) + (define-public emboss (package (name "emboss") |