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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-11-08 09:54:22 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-11-08 09:54:22 +0100 |
| commit | a9542937c8361b3aabda482bfdb40b07d92fba86 (patch) | |
| tree | 76ff4ef62aaa24b4e01b2300fdfa875eb0597e2c /gnu | |
| parent | 9f527c91990c4f620c88bb609e95589809a1354c (diff) | |
| download | guix-a9542937c8361b3aabda482bfdb40b07d92fba86.tar.gz | |
gnu: seek: Use INVOKE.
* gnu/packages/bioinformatics.scm (seek)[arguments]: Use INVOKE and return #T unconditionally; patch "gen_tools_am" shebang in "bootstrap" phase.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 25 |
1 files changed, 14 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index c175227997..1ceb40cb95 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5057,21 +5057,24 @@ distribution, coverage uniformity, strand specificity, etc.") (modify-phases %standard-phases (replace 'bootstrap (lambda _ - (invoke "bash" "gen_auto"))) + (substitute* "gen_tools_am" + (("/usr/bin/env.*") (which "perl"))) + (invoke "bash" "gen_auto") + #t)) (add-after 'build 'build-additional-tools (lambda* (#:key make-flags #:allow-other-keys) - (every (lambda (dir) - (with-directory-excursion (string-append "tools/" dir) - (zero? (apply system* "make" make-flags)))) - dirs))) + (for-each (lambda (dir) + (with-directory-excursion (string-append "tools/" dir) + (apply invoke "make" make-flags))) + dirs) + #t)) (add-after 'install 'install-additional-tools (lambda* (#:key make-flags #:allow-other-keys) - (fold (lambda (dir result) - (with-directory-excursion (string-append "tools/" dir) - (and result - (zero? (apply system* - `("make" ,@make-flags "install")))))) - #t dirs))))))) + (for-each (lambda (dir) + (with-directory-excursion (string-append "tools/" dir) + (apply invoke `("make" ,@make-flags "install")))) + dirs) + #t)))))) (inputs `(("gsl" ,gsl) ("boost" ,boost) |