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| author | Ricardo Wurmus <rekado@elephly.net> | 2018-03-16 15:03:02 +0100 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-03-16 15:40:31 +0100 |
| commit | fe52a215e53514d1857131e3a75104a081e415b6 (patch) | |
| tree | a594f7774770c5a7074eac93b384c8bd8c73a4fa /gnu | |
| parent | 77166eb758ff565837db9e9a26d34ba9aaa16281 (diff) | |
| download | guix-fe52a215e53514d1857131e3a75104a081e415b6.tar.gz | |
gnu: pigx-rnaseq: Disable memory hungry test.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to disable a memory hungry test.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 7 |
1 files changed, 7 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 1b49cfdfbf..fa4a4957b7 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -12677,6 +12677,13 @@ once. This package provides tools to perform Drop-seq analyses.") `(#:parallel-tests? #f ; not supported #:phases (modify-phases %standard-phases + ;; "test.sh" runs STAR, which requires excessive amounts of memory. + (add-after 'unpack 'disable-resource-intensive-test + (lambda _ + (substitute* "Makefile.in" + (("(^ tests/test_trim_galore/test.sh).*" _ m) m) + (("^ test.sh") "")) + #t)) (add-after 'install 'wrap-executable ;; Make sure the executable finds all R modules. (lambda* (#:key inputs outputs #:allow-other-keys) |