diff options
| author | Leo Famulari <leo@famulari.name> | 2021-01-25 15:21:09 -0500 |
|---|---|---|
| committer | Leo Famulari <leo@famulari.name> | 2021-01-25 15:40:55 -0500 |
| commit | 68dd78e2e47248b3e1e7ba1807a92a8374b39097 (patch) | |
| tree | d38564293f285d688a55b23e8a6424c6b26213b1 /gnu | |
| parent | 8b55544212a90b0276df49596a3d373e5c2e8f5c (diff) | |
| parent | 3f0af15131e524891df8c9f013f1be1597fe2d7e (diff) | |
| download | guix-68dd78e2e47248b3e1e7ba1807a92a8374b39097.tar.gz | |
Merge branch 'master' into staging
Diffstat (limited to 'gnu')
134 files changed, 6525 insertions, 2029 deletions
diff --git a/gnu/bootloader/grub.scm b/gnu/bootloader/grub.scm index 29c81ae641..13ee695909 100644 --- a/gnu/bootloader/grub.scm +++ b/gnu/bootloader/grub.scm @@ -168,15 +168,14 @@ STORE-DEVICE designates the device holding the store, and STORE-MOUNT-POINT is its mount point; these are used to determine where the background image and fonts must be searched for. STORE-DIRECTORY-PREFIX is a directory prefix to prepend to any store file name." - (define (setup-gfxterm config font-file) + (define (setup-gfxterm config) (if (memq 'gfxterm (bootloader-configuration-terminal-outputs config)) #~(format #f " -if loadfont ~a; then +if loadfont unicode; then set gfxmode=~a insmod all_video insmod gfxterm fi~%" - #+font-file #$(string-join (grub-theme-gfxmode (bootloader-theme config)) ";")) @@ -188,13 +187,6 @@ fi~%" (string-append (symbol->string (assoc-ref colors 'fg)) "/" (symbol->string (assoc-ref colors 'bg))))) - (define font-file - (let* ((bootloader (bootloader-configuration-bootloader config)) - (grub (bootloader-package bootloader))) - (normalize-file (file-append grub "/share/grub/unicode.pf2") - store-mount-point - store-directory-prefix))) - (define image (normalize-file (grub-background-image config) store-mount-point @@ -216,8 +208,8 @@ else set menu_color_normal=cyan/blue set menu_color_highlight=white/blue fi~%" - #$(grub-root-search store-device font-file) - #$(setup-gfxterm config font-file) + #$(grub-root-search store-device image) + #$(setup-gfxterm config) #$(grub-setup-io config) #$image @@ -545,9 +537,13 @@ fi~%")))) (invoke/quiet grub "--no-floppy" "--target=i386-pc" "--boot-directory" install-dir device)) - ;; When creating a disk-image, only install GRUB modules. - (copy-recursively (string-append bootloader "/lib/") - install-dir))))) + ;; When creating a disk-image, only install a font and GRUB modules. + (let* ((fonts (string-append install-dir "/grub/fonts"))) + (mkdir-p fonts) + (copy-file (string-append bootloader "/share/grub/unicode.pf2") + (string-append fonts "/unicode.pf2")) + (copy-recursively (string-append bootloader "/lib/") + install-dir)))))) (define install-grub-disk-image #~(lambda (bootloader root-index image) diff --git a/gnu/installer.scm b/gnu/installer.scm index 7863edbb67..d2be4b34f9 100644 --- a/gnu/installer.scm +++ b/gnu/installer.scm @@ -187,7 +187,7 @@ selected keymap." (lambda (models layouts) ((installer-keymap-page current-installer) layouts '#$context))))) - (#$apply-keymap result) + (and result (#$apply-keymap result)) result))) (define (installer-steps) diff --git a/gnu/installer/newt/keymap.scm b/gnu/installer/newt/keymap.scm index 1b3af2f158..92f7f46f34 100644 --- a/gnu/installer/newt/keymap.scm +++ b/gnu/installer/newt/keymap.scm @@ -56,7 +56,7 @@ different layout at any time from the parameters menu."))) (else (G_ "Exit"))) #:button-callback-procedure (case context - ((param) (const #t)) + ((param) (const #f)) (else (lambda _ (raise @@ -183,7 +183,9 @@ options." (compute (lambda (result _) (let* ((layout (result-step result 'layout)) - (variants (x11-keymap-layout-variants layout))) + (variants (if layout + (x11-keymap-layout-variants layout) + '()))) ;; Return #f if the layout does not have any variant. (and (not (null? variants)) (run-variant-page @@ -196,16 +198,19 @@ options." (gettext (x11-keymap-layout-description layout) "xkeyboard-config"))))))))))) - (define (format-result result) - (let ((layout (x11-keymap-layout-name - (result-step result 'layout))) - (variant (and=> (result-step result 'variant) + (define (format-result layout variant) + (let ((layout (x11-keymap-layout-name layout)) + (variant (and=> variant (lambda (variant) (gettext (x11-keymap-variant-name variant) "xkeyboard-config"))))) (toggleable-latin-layout layout variant))) - (format-result - (run-installer-steps #:steps keymap-steps))) + + (let* ((result (run-installer-steps #:steps keymap-steps)) + (layout (result-step result 'layout)) + (variant (result-step result 'variant))) + (and layout + (format-result layout variant)))) (define (keyboard-layout->configuration keymap) "Return the operating system configuration snippet to install KEYMAP." diff --git a/gnu/local.mk b/gnu/local.mk index ba95aeca64..f71d75135d 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -10,14 +10,14 @@ # Copyright © 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> # Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com> # Copyright © 2016, 2017, 2018, 2019 Alex Vong <alexvong1995@gmail.com> -# Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +# Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> # Copyright © 2016, 2017, 2018, 2019, 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> # Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> # Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org> # Copyright © 2017, 2020 Mathieu Othacehe <m.othacehe@gmail.com> # Copyright © 2017, 2018, 2019 Gábor Boskovits <boskovits@gmail.com> # Copyright © 2018 Amirouche Boubekki <amirouche@hypermove.net> -# Copyright © 2018, 2019, 2020 Oleg Pykhalov <go.wigust@gmail.com> +# Copyright © 2018, 2019, 2020, 2021 Oleg Pykhalov <go.wigust@gmail.com> # Copyright © 2018 Stefan Stefanović <stefanx2ovic@gmail.com> # Copyright © 2018, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> # Copyright © 2019, 2020 Guillaume Le Vaillant <glv@posteo.net> @@ -630,6 +630,7 @@ GNU_SYSTEM_MODULES = \ %D%/services/sddm.scm \ %D%/services/spice.scm \ %D%/services/ssh.scm \ + %D%/services/syncthing.scm \ %D%/services/sysctl.scm \ %D%/services/telephony.scm \ %D%/services/version-control.scm \ @@ -997,6 +998,7 @@ dist_patch_DATA = \ %D%/packages/patches/fpc-reproducibility.patch \ %D%/packages/patches/fplll-std-fenv.patch \ %D%/packages/patches/freedink-engine-fix-sdl-hints.patch \ + %D%/packages/patches/freebayes-devendor-deps.patch \ %D%/packages/patches/freeimage-unbundle.patch \ %D%/packages/patches/fuse-overlapping-headers.patch \ %D%/packages/patches/gajim-honour-GAJIM_PLUGIN_PATH.patch \ @@ -1128,6 +1130,7 @@ dist_patch_DATA = \ %D%/packages/patches/gspell-dash-test.patch \ %D%/packages/patches/guile-1.8-cpp-4.5.patch \ %D%/packages/patches/guile-2.2-skip-oom-test.patch \ + %D%/packages/patches/guile-2.2-skip-so-test.patch \ %D%/packages/patches/guile-default-utf8.patch \ %D%/packages/patches/guile-2.2-default-utf8.patch \ %D%/packages/patches/guile-relocatable.patch \ @@ -1178,12 +1181,14 @@ dist_patch_DATA = \ %D%/packages/patches/icu4c-CVE-2020-10531.patch \ %D%/packages/patches/id3lib-CVE-2007-4460.patch \ %D%/packages/patches/id3lib-UTF16-writing-bug.patch \ + %D%/packages/patches/idris-disable-test.patch \ %D%/packages/patches/ilmbase-fix-tests.patch \ %D%/packages/patches/inetutils-hurd.patch \ %D%/packages/patches/inkscape-poppler-0.76.patch \ %D%/packages/patches/intel-xed-fix-nondeterminism.patch \ %D%/packages/patches/intltool-perl-compatibility.patch \ %D%/packages/patches/iputils-libcap-compat.patch \ + %D%/packages/patches/ipxe-reproducible-geniso.patch \ %D%/packages/patches/irrlicht-use-system-libs.patch \ %D%/packages/patches/isl-0.11.1-aarch64-support.patch \ %D%/packages/patches/json-c-CVE-2020-12762.patch \ @@ -1383,6 +1388,7 @@ dist_patch_DATA = \ %D%/packages/patches/mupen64plus-video-z64-glew-correct-path.patch \ %D%/packages/patches/musl-cross-locale.patch \ %D%/packages/patches/mutt-store-references.patch \ + %D%/packages/patches/mutt-CVE-2021-3181.patch \ %D%/packages/patches/m4-gnulib-libio.patch \ %D%/packages/patches/ncompress-fix-softlinks.patch \ %D%/packages/patches/netcdf-date-time.patch \ @@ -1491,7 +1497,6 @@ dist_patch_DATA = \ %D%/packages/patches/plib-CVE-2011-4620.patch \ %D%/packages/patches/plib-CVE-2012-4552.patch \ %D%/packages/patches/plotutils-spline-test.patch \ - %D%/packages/patches/podofo-cmake-3.12.patch \ %D%/packages/patches/portaudio-audacity-compat.patch \ %D%/packages/patches/portmidi-modular-build.patch \ %D%/packages/patches/postgresql-disable-resolve_symlinks.patch \ @@ -1580,7 +1585,7 @@ dist_patch_DATA = \ %D%/packages/patches/readline-6.2-CVE-2014-2524.patch \ %D%/packages/patches/renpy-use-system-fribidi.patch \ %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch \ - %D%/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch \ + %D%/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch \ %D%/packages/patches/ri-li-modernize_cpp.patch \ %D%/packages/patches/ripperx-missing-file.patch \ %D%/packages/patches/rpcbind-CVE-2017-8779.patch \ @@ -1667,8 +1672,10 @@ dist_patch_DATA = \ %D%/packages/patches/thefuck-test-environ.patch \ %D%/packages/patches/tidy-CVE-2015-5522+5523.patch \ %D%/packages/patches/tinyxml-use-stl.patch \ + %D%/packages/patches/tipp10-disable-downloader.patch \ %D%/packages/patches/tipp10-fix-compiling.patch \ %D%/packages/patches/tipp10-remove-license-code.patch \ + %D%/packages/patches/tipp10-qt5.patch \ %D%/packages/patches/tk-find-library.patch \ %D%/packages/patches/transcode-ffmpeg.patch \ %D%/packages/patches/transmission-honor-localedir.patch \ @@ -1703,7 +1710,6 @@ dist_patch_DATA = \ %D%/packages/patches/vboot-utils-fix-format-load-address.patch \ %D%/packages/patches/vboot-utils-fix-tests-show-contents.patch \ %D%/packages/patches/vboot-utils-skip-test-workbuf.patch \ - %D%/packages/patches/vcflib-use-shared-libraries.patch \ %D%/packages/patches/vlc-qt-5.15.patch \ %D%/packages/patches/vigra-python-compat.patch \ %D%/packages/patches/vinagre-newer-freerdp.patch \ diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 375073363f..87b0f36cc1 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -267,7 +267,8 @@ and provides a \"top-like\" mode (monitoring).") "0x9zr0x3xvk4qkb6jnda451d5iyrl06cz1bjzjsm0lxvjj3fabyk")))) (build-system gnu-build-system) (arguments - '(#:configure-flags '("--localstatedir=/var"))) + '(#:configure-flags '("--localstatedir=/var") + #:make-flags '("GUILE_AUTO_COMPILE=0"))) (native-inputs `(("pkg-config" ,pkg-config) @@ -297,7 +298,8 @@ interface and is based on GNU Guile.") `(("pkg-config" ,pkg-config) ("guile" ,guile-2.2))) (inputs - `(("guile" ,guile-2.2))))) + `(("guile" ,guile-2.2) + ("guile2.2-readline" ,guile2.2-readline))))) (define-public guile3.0-shepherd (deprecated-package "guile3.0-shepherd" shepherd)) @@ -307,10 +309,21 @@ interface and is based on GNU Guile.") (inherit shepherd) (name "guile2.0-shepherd") (native-inputs - `(("pkg-config" ,pkg-config) + `(("help2man" ,help2man) + ("pkg-config" ,pkg-config) ("guile" ,guile-2.0))) (inputs - `(("guile" ,guile-2.0))))) + `(("guile" ,guile-2.0))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda _ + ;; (ice-9 threads) isn't available in guile-2.0 + (substitute* "modules/shepherd.scm" + ((".*\\(ice-9 threads\\).*") "")) + #t))) + ,@(package-arguments shepherd))))) (define-public cloud-utils (package @@ -445,7 +458,7 @@ graphs and can export its output to different formats.") (define-public facter (package (name "facter") - (version "4.0.47") + (version "4.0.49") (source (origin (method git-fetch) (uri (git-reference @@ -454,7 +467,7 @@ graphs and can export its output to different formats.") (file-name (git-file-name name version)) (sha256 (base32 - "1zz5kk3ad1jj8y939369dfvjh7zqwpkcqzzad7yb6wp01rc5sf88")))) + "0l7gic5ql5xiy5s6rb0j9ydyaal5bcxl10bx45khcgdr9zg16pb1")))) (build-system ruby-build-system) (arguments `(#:phases @@ -516,7 +529,7 @@ or via the @code{facter} Ruby library.") (define-public htop (package (name "htop") - (version "3.0.4") + (version "3.0.5") (source (origin (method git-fetch) @@ -524,7 +537,7 @@ or via the @code{facter} Ruby library.") (url "https://github.com/htop-dev/htop") (commit version))) (sha256 - (base32 "1fckfv96vzqjs3lzy0cgwsqv5vh1sxca3fhvgskmnkvr5bq6cia9")) + (base32 "10lp6cbfvigzp6pq5nwj3s3l4vs7cv92krz2r08nwrz8vl6rqdzp")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (inputs @@ -1402,7 +1415,7 @@ system administrator.") (define-public sudo (package (name "sudo") - (version "1.9.4p2") + (version "1.9.5p1") (source (origin (method url-fetch) (uri @@ -1412,7 +1425,7 @@ system administrator.") version ".tar.gz"))) (sha256 (base32 - "0r0g8z289ipw0zpkhmm33cpfm42j01jds2q1wilhh3flg7xg2jn3")) + "10kqdfbfpf3vk5ihz5gwynv4pxdf1lg6ircrlanyygb549yg7pad")) (modules '((guix build utils))) (snippet '(begin @@ -1862,7 +1875,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") (define-public acpica (package (name "acpica") - (version "20201217") + (version "20210105") (source (origin (method url-fetch) (uri (string-append @@ -1870,7 +1883,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") version ".tar.gz")) (sha256 (base32 - "06rdpfjmij5nni1x2wi1gnalhsza5yxq1viskjm9r11wmsjnxm2a")))) + "1gi7qzfywg118g5nlqn5lawxk25pg2sz01gmbz40vvmikks4ri9r")))) (build-system gnu-build-system) (native-inputs `(("flex" ,flex) ("bison" ,bison))) @@ -2611,14 +2624,14 @@ done with the @code{auditctl} utility.") (define-public nmap (package (name "nmap") - (version "7.91") + (version "7.80") (source (origin (method url-fetch) (uri (string-append "https://nmap.org/dist/nmap-" version ".tar.bz2")) (sha256 (base32 - "001kb5xadqswyw966k2lqi6jr6zz605jpp9w4kmm272if184pk0q")) + "1aizfys6l9f9grm82bk878w56mg0zpkfns3spzj157h98875mypw")) (modules '((guix build utils))) (snippet '(begin @@ -2696,7 +2709,7 @@ advanced netcat implementation (ncat), a utility for comparing scan results (ndiff), and a packet generation and response analysis tool (nping).") ;; This package uses nmap's bundled versions of libdnet and liblinear, which ;; both use a 3-clause BSD license. - (license (list license:npsl license:bsd-3)))) + (license (list license:nmap license:bsd-3)))) (define-public dstat (package @@ -3617,7 +3630,7 @@ Python loading in HPC environments.") (let ((real-name "inxi")) (package (name "inxi-minimal") - (version "3.2.01-1") + (version "3.2.02-2") (source (origin (method git-fetch) @@ -3626,7 +3639,7 @@ Python loading in HPC environments.") (commit version))) (file-name (git-file-name real-name version)) (sha256 - (base32 "15bakrv3jzj5h88c3bd0cfhh6hb8b4hm79924k1ygn29sqzgyw65")))) + (base32 "0fwx798v9kwiwkgbj97w6rjdanwf7ap65vvq1fqy7gd9x78xcxsq")))) (build-system trivial-build-system) (inputs `(("bash" ,bash-minimal) @@ -4306,3 +4319,30 @@ This program allows you to view and manipulate this EEPROM list.") (home-page "https://github.com/xobs/novena-eeprom/") (supported-systems '("armhf-linux")) (license license:bsd-3))) + +(define-public lrzsz + (package + (name "lrzsz") + (version "0.12.20") + (source (origin + (method url-fetch) + (uri (string-append "https://www.ohse.de/uwe/releases/lrzsz-" + version ".tar.gz")) + (sha256 + (base32 + "1wcgfa9fsigf1gri74gq0pa7pyajk12m4z69x7ci9c6x9fqkd2y2")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (setenv "CONFIG_SHELL" (which "bash")) + (invoke "./configure" + (string-append "--prefix=" + (assoc-ref outputs "out")))))))) + (synopsis "Implementation of XMODEM/YMODEM/ZMODEM transfer protocols") + (description "This package provides programs that transfer files using +the XMODEM/YMODEM/ZMODEM file transfer protocols.") + (home-page "https://ohse.de/uwe/software/lrzsz.html") + (license license:gpl2+))) diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 214878949e..4699f766b5 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012, 2013, 2014, 2015, 2016, 2017, 2018, 2019 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2013, 2015, 2017, 2018 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2015, 2017, 2018, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2014, 2018 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> @@ -327,9 +327,9 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.") (version "1.0") (source (origin (method url-fetch) - (uri (string-append - "https://gforge.inria.fr/frs/download.php/33497/cmh-" - version ".tar.gz")) + ;; Git repo at <https://gitlab.inria.fr/cmh/cmh>. + (uri (string-append "http://www.multiprecision.org/downloads/cmh-" + version ".tar.gz")) (sha256 (base32 "1a28xr9bs0igms0ik99x0w8lnb0jyfcmvyi26pbyh9ggcdivd33p")))) @@ -349,13 +349,12 @@ varieties, i.e. Jacobians of hyperelliptic curves. It can also be used to compute theta constants at arbitrary precision.") (license license:gpl3+) - (home-page - "https://gitlab.inria.fr/cmh/cmh#cmh-computation-of-genus-2-class-polynomials"))) + (home-page "http://www.multiprecision.org/cmh/home.html"))) (define-public giac (package (name "giac") - (version "1.6.0-41") + (version "1.6.0-47") (source (origin (method url-fetch) @@ -367,7 +366,7 @@ precision.") "~parisse/debian/dists/stable/main/source/" "giac_" version ".tar.gz")) (sha256 - (base32 "1z5b3jm6ffxk3yvdqzwn9icbna68brkrz5kspgacq823d03jfklc")))) + (base32 "15sgsr8l6njp5spagbqclqkdy3x7ra23wi6wvpc8vzlbivy3v43k")))) (build-system gnu-build-system) (arguments `(#:modules ((ice-9 ftw) @@ -674,9 +673,11 @@ geometry and singularity theory.") (version "7.0.4") (source (origin (method url-fetch) - ;; Use the ‘Latest version’ link for a stable URI across releases. - (uri (string-append "https://gforge.inria.fr/frs/download.php/" - "latestfile/160/ecm-" version ".tar.gz")) + (uri + (let ((hash "00c4c691a1ef8605b65bdf794a71539d")) + (string-append "https://gitlab.inria.fr/zimmerma/ecm/" + "uploads/" hash "/ecm-" version + ".tar.gz"))) (sha256 (base32 "0hxs24c2m3mh0nq1zz63z3sb7dhy1rilg2s1igwwcb26x3pb7xqc")))) (build-system gnu-build-system) diff --git a/gnu/packages/aspell.scm b/gnu/packages/aspell.scm index 76089333ce..26c0cf4332 100644 --- a/gnu/packages/aspell.scm +++ b/gnu/packages/aspell.scm @@ -476,14 +476,14 @@ under permissive licensing terms. See the 'Copyright' file.")))) (define-public ispell (package (name "ispell") - (version "3.4.01") + (version "3.4.02") (source (origin (method url-fetch) (uri (string-append "https://www.cs.hmc.edu/~geoff/tars/ispell-" version ".tar.gz")) (sha256 - (base32 "103vscg4bc7x2q84y18x1l75k54yhkw8lpza3qh8xxhcz5b0w7jb")))) + (base32 "0b6rqzqjdhwf323sf1dv8qzx5pxa5asz618922r59zjp65660yb6")))) (build-system gnu-build-system) (arguments `(#:parallel-build? #f diff --git a/gnu/packages/assembly.scm b/gnu/packages/assembly.scm index aaf70967ab..55a1be8d54 100644 --- a/gnu/packages/assembly.scm +++ b/gnu/packages/assembly.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2013, 2015 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2016, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Guy Fleury Iteriteka <hoonandon@gmail.com> ;;; Copyright © 2019 Andy Tai <atai@atai.org> @@ -26,6 +26,7 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages assembly) + #:use-module (guix build-system meson) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix download) @@ -148,6 +149,38 @@ to the clients.") (home-page "https://www.gnu.org/software/lightning/") (license license:gpl3+))) +(define-public simde + (package + (name "simde") + (version "0.7.0") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/simd-everywhere/simde") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1xf5xfzkk9rj47cichgz5ni8xs9hbpz5p6fmxr4ij721ffd002k3")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix the version string + (substitute* "meson.build" + (("0.7.0-rc2") "0.7.0")) + #t)))) + (build-system meson-build-system) + ;; We really want this for the headers, and the tests require a bundled library. + (arguments '(#:configure-flags '("-Dtests=false"))) + (synopsis "Implementations of SIMD instruction sets for foreign systems") + (description "The SIMDe header-only library provides fast, portable +implementations of SIMD intrinsics on hardware which doesn't natively support +them, such as calling SSE functions on ARM. There is no performance penalty if +the hardware supports the native implementation (e.g., SSE/AVX runs at full +speed on x86, NEON on ARM, etc.).") + (home-page "https://simd-everywhere.github.io/blog/") + (license license:expat))) + (define-public fasm (package (name "fasm") diff --git a/gnu/packages/astronomy.scm b/gnu/packages/astronomy.scm index 9485fe600f..0e1a55481f 100644 --- a/gnu/packages/astronomy.scm +++ b/gnu/packages/astronomy.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2019 by Amar Singh <nly@disroot.org> ;;; Copyright © 2020 R Veera Kumar <vkor@vkten.in> ;;; Copyright © 2020 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -51,6 +52,7 @@ #:use-module (gnu packages xorg) #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) + #:use-module (ice-9 match) #:use-module (srfi srfi-1)) (define-public cfitsio @@ -156,6 +158,52 @@ header.") programs for the manipulation and analysis of astronomical data.") (license license:gpl3+))) +(define-public sextractor + (package + (name "sextractor") + (version "2.25.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/astromatic/sextractor") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0q69n3nyal57h3ik2xirwzrxzljrwy9ivwraxzv9566vi3n4z5mw")))) + (build-system gnu-build-system) + ;; NOTE: (Sharlatan-20210124T103117+0000): Building with `atlas' is failing + ;; due to missing shared library which required on configure phase. Switch + ;; build to use `openblas' instead. It requires FFTW with single precision + ;; `fftwf'. + (arguments + `(#:configure-flags + (list + "--enable-openblas" + (string-append + "--with-openblas-libdir=" (assoc-ref %build-inputs "openblas") "/lib") + (string-append + "--with-openblas-incdir=" (assoc-ref %build-inputs "openblas") "/include") + (string-append + "--with-fftw-libdir=" (assoc-ref %build-inputs "fftw") "/lib") + (string-append + "--with-fftw-incdir=" (assoc-ref %build-inputs "fftw") "/include")))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("libtool" ,libtool))) + (inputs + `(("openblas" ,openblas) + ("fftw" ,fftwf))) + (home-page "http://www.astromatic.net/software/sextractor") + (synopsis "Extract catalogs of sources from astronomical images") + (description + "SExtractor is a program that builds a catalogue of objects from an +astronomical image. Although it is particularly oriented towards reduction of +large scale galaxy-survey data, it can perform reasonably well on moderately +crowded star fields.") + (license license:gpl3+))) + (define-public stellarium (package (name "stellarium") @@ -299,6 +347,55 @@ Mechanics, Astrometry and Astrodynamics library.") (license (list license:lgpl2.0+ license:gpl2+)))) ; examples/transforms.c & lntest/*.c +(define-public libpasastro + ;; NOTE: (Sharlatan-20210122T215921+0000): the version tag has a build + ;; error on spice which is resolved with the latest commit. + (let ((commit "e3c218d1502a18cae858c83a9a8812ab197fcb60") + (revision "1")) + (package + (name "libpasastro") + (version (git-version "1.4.0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pchev/libpasastro") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0asp2sn34nds5va2ghppwc41vb6j3d1mf049j949rgrll817kx47")))) + (build-system gnu-build-system) + (arguments + `(#:tests? #f + #:make-flags + (list + ,(match (or (%current-target-system) (%current-system)) + ((or "aarch64-linux" "armhf-linux" "i686-linux" "x86_64-linux") + "OS_TARGET=linux") + (_ #f)) + ,(match (or (%current-target-system) (%current-system)) + ("i686-linux" "CPU_TARGET=i386") + ("x86_64-linux" "CPU_TARGET=x86_64") + ((or "armhf-linux" "aarch64-linux") "CPU_TARGET=armv7l") + (_ #f)) + (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/pchev/libpasastro") + (synopsis "Interface to astronomy library for use from Pascal program") + (description + "This package provides shared libraries to interface Pascal program with +standard astronomy libraries: + +@itemize +@item @code{libpasgetdss.so}: Interface with GetDSS to work with DSS images. +@item @code{libpasplan404.so}: Interface with Plan404 to compute planets position. +@item @code{libpaswcs.so}: Interface with libwcs to work with FITS WCS. +@item @code{libpasspice.so}: To work with NAIF/SPICE kernel. +@end itemize\n") + (license license:gpl2+)))) + (define-public xplanet (package (name "xplanet") diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm index 6fe441faae..2e46dc3a26 100644 --- a/gnu/packages/audio.scm +++ b/gnu/packages/audio.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Alex Kost <alezost@gmail.com> @@ -4134,6 +4134,63 @@ the following features: ") (license license:lgpl3+))) +(define-public lv2-speech-denoiser + (let ((commit "04cfba929630404f8d4f4ca5bac8d9b09a99152f") + (revision "1")) + (package + (name "lv2-speech-denoiser") + (version (git-version "0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/lucianodato/speech-denoiser/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "189l6lz8sz5vr6bjyzgcsrvksl1w6crqsg0q65r94b5yjsmjnpr4")))) + (build-system meson-build-system) + (arguments + `(#:meson ,meson-0.55 + ;; Using a "release" build is recommended for performance + #:build-type "release" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-meson-build + (lambda _ + (substitute* "meson.build" + (("install_folder = 'sdenoise.lv2'") + "install_folder = 'lib/lv2/sdenoise.lv2'") + (("build/manifest.ttl") "../build/manifest.ttl")) + #t)) + (add-after 'unpack 'build-rnnoise + (lambda _ + (with-directory-excursion "rnnoise" + (let ((old-CFLAGS (getenv "CFLAGS"))) + (setenv "CFLAGS" "-fvisibility=hidden -fPIC -Wl,--exclude-libs,ALL") + (setenv "CONFIG_SHELL" (which "bash")) + (invoke "autoreconf" "-vif") + (invoke "sh" "configure" + "--disable-examples" + "--disable-doc" + "--disable-shared" + "--enable-static") + (invoke "make") + (setenv "CFLAGS" old-CFLAGS)))))))) + (inputs + `(("lv2" ,lv2))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("libtool" ,libtool) + ("pkg-config" ,pkg-config))) + (home-page "https://github.com/werman/noise-suppression-for-voice") + (synopsis "Speech denoise LV2 plugin based on Xiph's RNNoise library") + (description "RNNoise is a library that uses deep learning to apply +noise supression to audio sources with voice presence. This package provides +an LV2 audio plugin.") + (license license:lgpl3+)))) + (define-public cli-visualizer (package (name "cli-visualizer") diff --git a/gnu/packages/autotools.scm b/gnu/packages/autotools.scm index 203f1bfb52..6074379c46 100644 --- a/gnu/packages/autotools.scm +++ b/gnu/packages/autotools.scm @@ -11,6 +11,7 @@ ;;; Copyright © 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2019 Pierre-Moana Levesque <pierre.moana.levesque@gmail.com> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -38,6 +39,7 @@ #:use-module (guix utils) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix git-download) #:use-module (guix build-system gnu) #:use-module (guix build-system trivial) #:use-module (ice-9 match) @@ -491,6 +493,53 @@ complexity of working with shared libraries across platforms.") (license gpl3+) (home-page "https://www.gnu.org/software/libtool/"))) +(define-public config + (let ((revision "1") + (commit "c8ddc8472f8efcadafc1ef53ca1d863415fddd5f")) + (package + (name "config") + (version (git-version "0.0.0" revision commit)) ;no release tag + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://git.savannah.gnu.org/git/config.git/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0x6ycvkmmhhhag97wsf0pw8n5fvh12rjvrck90rz17my4ys16qwv")))) + (build-system gnu-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'patch-/bin/sh + (lambda _ + (substitute* "testsuite/config-guess.sh" + (("#!/bin/sh") + (string-append "#!" (which "sh")))) + #t)) + (replace 'build + (lambda _ + (invoke "make" "manpages"))) + (delete 'configure) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (man1 (string-append out "/share/man/man1"))) + (install-file "config.guess" bin) + (install-file "config.sub" bin) + (install-file "doc/config.guess.1" man1) + (install-file "doc/config.sub.1" man1) + #t)))))) + (native-inputs + `(("help2man" ,help2man))) + (home-page "https://savannah.gnu.org/projects/config") + (synopsis "Ubiquitious config.guess and config.sub scripts") + (description "The `config.guess' script tries to guess a canonical system triple, +and `config.sub' validates and canonicalizes. These are used as part of +configuration in nearly all GNU packages (and many others).") + (license gpl2+)))) + (define-public libltdl ;; This is a libltdl package separate from the libtool package. This is ;; useful because, unlike libtool, it has zero extra dependencies (making it diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 512abcd8fd..8514306f94 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4,14 +4,14 @@ ;;; Copyright © 2015, 2016, 2018, 2019, 2020 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2020 Roel Janssen <roel@gnu.org> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016, 2018 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com> ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com> -;;; Copyright © 2018, 2019, 2020 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2018, 2019, 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Brian Leung <bkleung89@gmail.com> ;;; Copyright © 2019 Brett Gilio <brettg@gnu.org> @@ -57,6 +57,7 @@ #:use-module (guix build-system trivial) #:use-module (guix deprecation) #:use-module (gnu packages) + #:use-module (gnu packages assembly) #:use-module (gnu packages autotools) #:use-module (gnu packages algebra) #:use-module (gnu packages base) @@ -142,6 +143,7 @@ #:use-module (gnu packages xml) #:use-module (gnu packages xorg) #:use-module (srfi srfi-1) + #:use-module (srfi srfi-26) #:use-module (ice-9 match)) (define-public aragorn @@ -3563,61 +3565,60 @@ comment or quality sections.") (define-public gemma (package (name "gemma") - (version "0.98") + (version "0.98.3") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/xiangzhou/GEMMA") - (commit (string-append "v" version)))) + (url "https://github.com/genetics-statistics/GEMMA") + (commit version))) (file-name (git-file-name name version)) (sha256 (base32 - "1s3ncnbn45r2hh1cvrqky1kbqq6546biypr4f5mkw1kqlrgyh0yg")))) + "1p8a7kkfn1mmrg017aziy544aha8i9h6wd1x2dk3w2794wl33qb7")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "contrib") + #t)))) + (build-system gnu-build-system) (inputs - `(("eigen" ,eigen) - ("gfortran" ,gfortran "lib") - ("gsl" ,gsl) - ("lapack" ,lapack) + `(("gsl" ,gsl) ("openblas" ,openblas) ("zlib" ,zlib))) - (build-system gnu-build-system) + (native-inputs + `(("catch" ,catch-framework2-1) + ("perl" ,perl) + ("shunit2" ,shunit2) + ("which" ,which))) (arguments - `(#:make-flags - '(,@(match (%current-system) - ("x86_64-linux" - '("FORCE_DYNAMIC=1")) - ("i686-linux" - '("FORCE_DYNAMIC=1" "FORCE_32BIT=1")) - (_ - '("FORCE_DYNAMIC=1" "NO_INTEL_COMPAT=1")))) - #:phases + `(#:phases (modify-phases %standard-phases (delete 'configure) - (add-after 'unpack 'find-eigen + (add-after 'unpack 'prepare-build (lambda* (#:key inputs #:allow-other-keys) - ;; Ensure that Eigen headers can be found - (setenv "CPLUS_INCLUDE_PATH" - (string-append (assoc-ref inputs "eigen") - "/include/eigen3")) + (mkdir-p "bin") + (substitute* "Makefile" + (("/usr/local/opt/openblas") + (assoc-ref inputs "openblas"))) #t)) - (add-before 'build 'bin-mkdir - (lambda _ - (mkdir-p "bin") - #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; 'make slow-check' expects shunit2-2.0.3. + (with-directory-excursion "test" + (invoke "./test_suite.sh")) + #t))) (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (install-file "bin/gemma" - (string-append - out "/bin"))) - #t))) - #:tests? #f)) ; no tests included yet - (home-page "https://github.com/xiangzhou/GEMMA") + (install-file "bin/gemma" + (string-append (assoc-ref outputs "out") "/bin")) + #t))))) + (home-page "https://github.com/genetics-statistics/GEMMA") (synopsis "Tool for genome-wide efficient mixed model association") (description - "Genome-wide Efficient Mixed Model Association (GEMMA) provides a -standard linear mixed model resolver with application in genome-wide -association studies (GWAS).") + "@acronym{GEMMA, Genome-wide Efficient Mixed Model Association} provides a +standard linear mixed model resolver with application in @acronym{GWAS, +genome-wide association studies}.") (license license:gpl3))) (define-public grit @@ -4687,7 +4688,7 @@ sequencing tag position and orientation.") (define-public mafft (package (name "mafft") - (version "7.471") + (version "7.475") (source (origin (method url-fetch) (uri (string-append @@ -4696,7 +4697,7 @@ sequencing tag position and orientation.") (file-name (string-append name "-" version ".tgz")) (sha256 (base32 - "0r1973fx2scq4712zdqfy67wkzqj0c0bhrdy4jxhvq40mdxyry30")))) + "0i2i2m3blh2xkbkdk48hxfssks30ny0v381gdl7zwhcvp0axs26r")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; no automated tests, though there are tests in the read me @@ -7073,6 +7074,55 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-snapatac + (package + (name "r-snapatac") + (version "2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/r3fang/SnapATAC") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "037jzlbl436fi7lkpq7d83i2vd1crnrik3vac2x6xj75dbikb2av")))) + (properties `((upstream-name . "SnapATAC"))) + (build-system r-build-system) + (propagated-inputs + `(("r-bigmemory" ,r-bigmemory) + ("r-doparallel" ,r-doparallel) + ("r-dosnow" ,r-dosnow) + ("r-edger" ,r-edger) + ("r-foreach" ,r-foreach) + ("r-genomicranges" ,r-genomicranges) + ("r-igraph" ,r-igraph) + ("r-iranges" ,r-iranges) + ("r-irlba" ,r-irlba) + ("r-matrix" ,r-matrix) + ("r-plyr" ,r-plyr) + ("r-plot3d" ,r-plot3d) + ("r-rann" ,r-rann) + ("r-raster" ,r-raster) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rhdf5" ,r-rhdf5) + ("r-rtsne" ,r-rtsne) + ("r-scales" ,r-scales) + ("r-viridis" ,r-viridis))) + (home-page "https://github.com/r3fang/SnapATAC") + (synopsis "Single nucleus analysis package for ATAC-Seq") + (description + "This package provides a fast and accurate analysis toolkit for single +cell ATAC-seq (Assay for transposase-accessible chromatin using sequencing). +Single cell ATAC-seq can resolve the heterogeneity of a complex tissue and +reveal cell-type specific regulatory landscapes. However, the exceeding data +sparsity has posed unique challenges for the data analysis. This package +@code{r-snapatac} is an end-to-end bioinformatics pipeline for analyzing large- +scale single cell ATAC-seq data which includes quality control, normalization, +clustering analysis, differential analysis, motif inference and exploration of +single cell ATAC-seq sequencing data.") + (license license:gpl3))) + (define-public r-scde (package (name "r-scde") @@ -7726,6 +7776,31 @@ BLAST, KEGG, GenBank, MEDLINE and GO.") ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+) (license (list license:ruby license:lgpl2.1+ license:gpl2+ )))) +(define-public bio-vcf + (package + (name "bio-vcf") + (version "0.9.5") + (source + (origin + (method url-fetch) + (uri (rubygems-uri "bio-vcf" version)) + (sha256 + (base32 + "1glw5pn9s8z13spxk6yyfqaz80n9lga67f33w35nkpq9dwi2vg6g")))) + (build-system ruby-build-system) + (native-inputs + `(("ruby-cucumber" ,ruby-cucumber))) + (synopsis "Smart VCF parser DSL") + (description + "Bio-vcf provides a @acronym{DSL, domain specific language} for processing +the VCF format. Record named fields can be queried with regular expressions. +Bio-vcf is a new generation VCF parser, filter and converter. Bio-vcf is not +only very fast for genome-wide (WGS) data, it also comes with a filtering, +evaluation and rewrite language and can output any type of textual data, +including VCF header and contents in RDF and JSON.") + (home-page "https://github.com/vcflib/bio-vcf") + (license license:expat))) + (define-public r-biocviews (package (name "r-biocviews") @@ -9386,8 +9461,9 @@ group or two ChIP groups run under different conditions.") (delete 'configure) ; There is no configure phase. (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (install-file "filevercmp" bin) + (let ((out (assoc-ref outputs "out"))) + (install-file "filevercmp" (string-append out "/bin")) + (install-file "filevercmp.h" (string-append out "/include")) #t)))))) (home-page "https://github.com/ekg/filevercmp") (synopsis "This program compares version strings") @@ -10514,41 +10590,20 @@ explore and perform basic analysis of single cell sequencing data coming from droplet sequencing. It has been particularly tailored for Drop-seq.") (license license:gpl3)))) -(define htslib-for-sambamba - (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5")) - (package - (inherit htslib) - (name "htslib-for-sambamba") - (version (string-append "1.3.1-1." (string-take commit 9))) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/lomereiter/htslib") - (commit commit))) - (file-name (string-append "htslib-" version "-checkout")) - (sha256 - (base32 - "0g38g8s3npr0gjm9fahlbhiskyfws9l5i0x1ml3rakzj7az5l9c9")))) - (native-inputs - `(("autoconf" ,autoconf) - ("automake" ,automake) - ,@(package-native-inputs htslib)))))) - (define-public sambamba (package (name "sambamba") - (version "0.7.1") + (version "0.8.0") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/lomereiter/sambamba") + (url "https://github.com/biod/sambamba") (commit (string-append "v" version)))) - (file-name (string-append name "-" version "-checkout")) + (file-name (git-file-name name version)) (sha256 (base32 - "111h05b60pj8dxbidiamy4imc92x2962b3lmb7wgysl6lx064qis")))) + "07dznzl6m8k7sw84jxw2kx6i3ymrapbmcmyh0fxz8wrybhw8fmwc")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; there is no test target @@ -10558,52 +10613,30 @@ droplet sequencing. It has been particularly tailored for Drop-seq.") (delete 'configure) (add-after 'unpack 'fix-ldc-version (lambda _ - (substitute* "gen_ldc_version_info.py" - (("/usr/bin/env.*") (which "python3"))) (substitute* "Makefile" ;; We use ldc2 instead of ldmd2 to compile sambamba. (("\\$\\(shell which ldmd2\\)") (which "ldc2"))) #t)) - (add-after 'unpack 'place-biod-and-undead - (lambda* (#:key inputs #:allow-other-keys) - (copy-recursively (assoc-ref inputs "biod") "BioD") - #t)) (add-after 'unpack 'unbundle-prerequisites (lambda _ (substitute* "Makefile" - (("htslib/libhts.a lz4/lib/liblz4.a") - "-L-lhts -L-llz4") - ((" lz4-static htslib-static") "")) + (("= lz4/lib/liblz4.a") "= -L-llz4") + (("ldc_version_info lz4-static") "ldc_version_info")) #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin"))) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) (mkdir-p bin) (copy-file (string-append "bin/sambamba-" ,version) (string-append bin "/sambamba")) #t)))))) (native-inputs - `(("ldc" ,ldc) - ("rdmd" ,rdmd) - ("python" ,python) - ("biod" - ,(let ((commit "7969eb0a847b05874e83ffddead26e193ece8101")) - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/biod/BioD") - (commit commit))) - (file-name (string-append "biod-" - (string-take commit 9) - "-checkout")) - (sha256 - (base32 - "0mjxsmbmv0jxl3pq21p8j5r829d648if8q58ka50b2956lc6qkpm"))))))) + `(("python" ,python))) (inputs - `(("lz4" ,lz4) - ("htslib" ,htslib-for-sambamba))) - (home-page "https://lomereiter.github.io/sambamba/") + `(("ldc" ,ldc) + ("lz4" ,lz4) + ("zlib" ,zlib))) + (home-page "https://github.com/biod/sambamba") (synopsis "Tools for working with SAM/BAM data") (description "Sambamba is a high performance modern robust and fast tool (and library), written in the D programming language, for @@ -14855,10 +14888,14 @@ some of the details of opening and jumping in tabix-indexed files.") (delete 'configure) ; There is no configure phase. (replace 'install (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (include (string-append out "/include"))) ;; TODO: There are Python modules for these programs too. (install-file "multichoose" bin) - (install-file "multipermute" bin)) + (install-file "multipermute" bin) + (install-file "multichoose.h" include) + (install-file "multipermute.h" include)) #t))))) (home-page "https://github.com/ekg/multichoose") (synopsis "Efficient loopless multiset combination generation algorithm") @@ -14967,32 +15004,44 @@ library automatically handles index file generation and use.") (define-public vcflib (package (name "vcflib") - (version "1.0.1") + (version "1.0.2") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/vcflib/vcflib/releases/" - "download/v" version - "/vcflib-" version "-src.tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/vcflib/vcflib") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "14zzrg8hg8cq9cvq2wdvp21j7nmxxkjrbagw2apd2yqv2kyx42lm")) - (patches (search-patches "vcflib-use-shared-libraries.patch")) + (base32 "1k1z3876kbzifj1sqfzsf3lgb4rw779hvkg6ryxbyq5bc2paj9kh")) (modules '((guix build utils))) (snippet - `(begin + '(begin + (substitute* "CMakeLists.txt" + ((".*fastahack.*") "") + ((".*smithwaterman.*") "") + (("(pkg_check_modules\\(TABIXPP)" text) + (string-append + "pkg_check_modules(FASTAHACK REQUIRED fastahack)\n" + "pkg_check_modules(SMITHWATERMAN REQUIRED smithwaterman)\n" + text)) + (("\\$\\{TABIXPP_LIBRARIES\\}" text) + (string-append "${FASTAHACK_LIBRARIES} " + "${SMITHWATERMAN_LIBRARIES} " + text))) (substitute* (find-files "." "\\.(h|c)(pp)?$") (("\"SmithWatermanGotoh.h\"") "<smithwaterman/SmithWatermanGotoh.h>") (("\"convert.h\"") "<smithwaterman/convert.h>") (("\"disorder.h\"") "<smithwaterman/disorder.h>") - (("\"tabix.hpp\"") "<tabix.hpp>") - (("\"Fasta.h\"") "<fastahack/Fasta.h>")) + (("Fasta.h") "fastahack/Fasta.h")) (for-each delete-file-recursively '("fastahack" "filevercmp" "fsom" "googletest" "intervaltree" - "libVCFH" "multichoose" "smithwaterman" "tabixpp")) + "libVCFH" "multichoose" "smithwaterman")) #t)))) - (build-system gnu-build-system) + (build-system cmake-build-system) (inputs - `(("htslib" ,htslib) + `(("bzip2" ,bzip2) + ("htslib" ,htslib) ("fastahack" ,fastahack) ("perl" ,perl) ("python" ,python) @@ -15005,22 +15054,20 @@ library automatically handles index file generation and use.") ;; Submodules. ;; This package builds against the .o files so we need to extract the source. ("filevercmp-src" ,(package-source filevercmp)) + ("fsom-src" ,(package-source fsom)) ("intervaltree-src" ,(package-source intervaltree)) ("multichoose-src" ,(package-source multichoose)))) (arguments `(#:tests? #f ; no tests #:phases (modify-phases %standard-phases - (add-after 'unpack 'set-flags - (lambda* (#:key outputs #:allow-other-keys) - (substitute* "Makefile" - (("LDFLAGS =") - (string-append "LDFLAGS = -Wl,-rpath=" - (assoc-ref outputs "out") "/lib "))) - (substitute* "filevercmp/Makefile" - (("-c") "-c -fPIC")) + (add-after 'unpack 'build-shared-library + (lambda _ + (substitute* "CMakeLists.txt" + (("vcflib STATIC") "vcflib SHARED")) + (substitute* "test/Makefile" + (("libvcflib.a") "libvcflib.so")) #t)) - (delete 'configure) (add-after 'unpack 'unpack-submodule-sources (lambda* (#:key inputs #:allow-other-keys) (let ((unpack (lambda (source target) @@ -15033,39 +15080,31 @@ library automatically handles index file generation and use.") "--strip-components=1")))))) (and (unpack "filevercmp-src" "filevercmp") + (unpack "fsom-src" "fsom") (unpack "intervaltree-src" "intervaltree") - (unpack "multichoose-src" "multichoose"))))) - (replace 'install + (unpack "multichoose-src" "multichoose")) + #t))) + ;; This pkg-config file is provided by other distributions. + (add-after 'install 'install-pkg-config-file (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (lib (string-append out "/lib"))) - (for-each (lambda (file) - (install-file file bin)) - (find-files "bin" ".*")) - (install-file "libvcflib.so" lib) - (install-file "libvcflib.a" lib) - (for-each - (lambda (file) - (install-file file (string-append out "/include"))) - (find-files "include" "\\.h(pp)?$")) - (mkdir-p (string-append lib "/pkgconfig")) - (with-output-to-file (string-append lib "/pkgconfig/vcflib.pc") + (pkgconfig (string-append out "/lib/pkgconfig"))) + (mkdir-p pkgconfig) + (with-output-to-file (string-append pkgconfig "/libvcflib.pc") (lambda _ (format #t "prefix=~a~@ exec_prefix=${prefix}~@ libdir=${exec_prefix}/lib~@ includedir=${prefix}/include~@ ~@ - ~@ Name: libvcflib~@ Version: ~a~@ Requires: smithwaterman, fastahack~@ Description: C++ library for parsing and manipulating VCF files~@ - Libs: -L${libdir} -lvcflib~@ + Libs: -L${libdir} -llibvcflib~@ Cflags: -I${includedir}~%" - out ,version)))) - #t))))) + out ,version))) + #t)))))) (home-page "https://github.com/vcflib/vcflib/") (synopsis "Library for parsing and manipulating VCF files") (description "Vcflib provides methods to manipulate and interpret @@ -15076,125 +15115,94 @@ manipulations on VCF files.") (license license:expat))) (define-public freebayes - (let ((commit "3ce827d8ebf89bb3bdc097ee0fe7f46f9f30d5fb") - (revision "1") - (version "1.0.2")) - (package - (name "freebayes") - (version (git-version version revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/ekg/freebayes") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "1sbzwmcbn78ybymjnhwk7qc5r912azy5vqz2y7y81616yc3ba2a2")))) - (build-system gnu-build-system) - (inputs - `(("bamtools" ,bamtools) - ("htslib" ,htslib) - ("zlib" ,zlib))) - (native-inputs - `(("bc" ,bc) ; Needed for running tests. - ("samtools" ,samtools) ; Needed for running tests. - ("parallel" ,parallel) ; Needed for running tests. - ("perl" ,perl) ; Needed for running tests. - ("procps" ,procps) ; Needed for running tests. - ("python" ,python-2) ; Needed for running tests. - ("vcflib-src" ,(package-source vcflib)) - ;; These are submodules for the vcflib version used in freebayes. - ;; This package builds against the .o files so we need to extract the source. - ("tabixpp-src" ,(package-source tabixpp)) - ("smithwaterman-src" ,(package-source smithwaterman)) - ("multichoose-src" ,(package-source multichoose)) - ("fsom-src" ,(package-source fsom)) - ("filevercmp-src" ,(package-source filevercmp)) - ("fastahack-src" ,(package-source fastahack)) - ("intervaltree-src" ,(package-source intervaltree)) - ;; These submodules are needed to run the tests. - ("bash-tap-src" ,(package-source bash-tap)) - ("test-simple-bash-src" - ,(origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/ingydotnet/test-simple-bash/") - (commit "124673ff204b01c8e96b7fc9f9b32ee35d898acc"))) - (file-name "test-simple-bash-src-checkout") - (sha256 - (base32 "043plp6z0x9yf7mdpky1fw7zcpwn1p47px95w9mh16603zqqqpga")))))) - (arguments - `(#:make-flags - (list "CC=gcc" - (string-append "BAMTOOLS_ROOT=" - (assoc-ref %build-inputs "bamtools"))) - #:test-target "test" - #:phases - (modify-phases %standard-phases - (delete 'configure) - (add-after 'unpack 'fix-tests - (lambda _ - (substitute* "test/t/01_call_variants.t" - (("grep -P \"\\(\\\\t500\\$\\|\\\\t11000\\$\\|\\\\t1000\\$\\)\"") - "grep -E ' (500|11000|1000)$'")) - #t)) - (add-after 'unpack 'unpack-submodule-sources - (lambda* (#:key inputs #:allow-other-keys) - (let ((unpack (lambda (source target) - (with-directory-excursion target - (if (file-is-directory? (assoc-ref inputs source)) - (copy-recursively (assoc-ref inputs source) ".") - (invoke "tar" "xvf" - (assoc-ref inputs source) - "--strip-components=1")))))) - (and - (unpack "vcflib-src" "vcflib") - (unpack "fastahack-src" "vcflib/fastahack") - (unpack "filevercmp-src" "vcflib/filevercmp") - (unpack "fsom-src" "vcflib/fsom") - (unpack "intervaltree-src" "vcflib/intervaltree") - (unpack "multichoose-src" "vcflib/multichoose") - (unpack "smithwaterman-src" "vcflib/smithwaterman") - (unpack "tabixpp-src" "vcflib/tabixpp") - (unpack "test-simple-bash-src" "test/test-simple-bash") - (unpack "bash-tap-src" "test/bash-tap"))))) - (add-after 'unpack-submodule-sources 'fix-makefiles - (lambda _ - ;; We don't have the .git folder to get the version tag from. - (substitute* "vcflib/Makefile" - (("^GIT_VERSION.*") - (string-append "GIT_VERSION = v" ,version))) - (substitute* "src/Makefile" - (("-I\\$\\(BAMTOOLS_ROOT\\)/src") - "-I$(BAMTOOLS_ROOT)/include/bamtools")) - #t)) - (add-before 'build 'build-tabixpp-and-vcflib - (lambda* (#:key inputs make-flags #:allow-other-keys) - (with-directory-excursion "vcflib" - (with-directory-excursion "tabixpp" - (apply invoke "make" - (string-append "HTS_LIB=" - (assoc-ref inputs "htslib") - "/lib/libhts.a") - make-flags)) - (apply invoke "make" - (string-append "CFLAGS=-Itabixpp") - "all" - make-flags)))) - (replace 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) - (install-file "bin/freebayes" bin) - (install-file "bin/bamleftalign" bin)) - #t))))) - (home-page "https://github.com/ekg/freebayes") - (synopsis "Haplotype-based variant detector") - (description "FreeBayes is a Bayesian genetic variant detector designed to + (package + (name "freebayes") + (version "1.3.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/freebayes/freebayes") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0myz3giad7jqp6ricdfnig9ymlcps2h67mlivadvx97ngagm85z8")) + (patches (search-patches "freebayes-devendor-deps.patch")) + (modules '((guix build utils))) + (snippet + '(begin + (delete-file-recursively "contrib/htslib") + #t)))) + (build-system meson-build-system) + (inputs + `(("fastahack" ,fastahack) + ("htslib" ,htslib) + ("smithwaterman" ,smithwaterman) + ("tabixpp" ,tabixpp) + ("vcflib" ,vcflib) + ("zlib" ,zlib))) + (native-inputs + `(("bash-tap" ,bash-tap) + ("bc" ,bc) + ("grep" ,grep) ; Built with perl support. + ("parallel" ,parallel) + ("perl" ,perl) + ("pkg-config" ,pkg-config) + ("samtools" ,samtools) + ("simde" ,simde) + ;; This submodule is needed to run the tests. + ("test-simple-bash-src" + ,(origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ingydotnet/test-simple-bash/") + (commit "124673ff204b01c8e96b7fc9f9b32ee35d898acc"))) + (file-name "test-simple-bash-src-checkout") + (sha256 + (base32 "043plp6z0x9yf7mdpky1fw7zcpwn1p47px95w9mh16603zqqqpga")))))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-source + (lambda* (#:key inputs #:allow-other-keys) + (let ((bash-tap (assoc-ref inputs "bash-tap"))) + (substitute* (find-files "test/t") + (("BASH_TAP_ROOT=bash-tap") + (string-append "BASH_TAP_ROOT=" bash-tap "/bin")) + (("bash-tap/bash-tap-bootstrap") + (string-append bash-tap "/bin/bash-tap-bootstrap")) + (("source.*bash-tap-bootstrap") + (string-append "source " bash-tap "/bin/bash-tap-bootstrap"))) + (substitute* "meson.build" + ;; Some inputs aren't actually needed. + ((".*bamtools/src.*") "") + ((".*multichoose.*") "")) + (substitute* '("src/BedReader.cpp" + "src/BedReader.h") + (("../intervaltree/IntervalTree.h") "IntervalTree.h")) + #t))) + (add-after 'unpack 'unpack-submodule-sources + (lambda* (#:key inputs #:allow-other-keys) + (mkdir-p "test/test-simple-bash") + (copy-recursively (assoc-ref inputs "test-simple-bash-src") + "test/test-simple-bash") + #t)) + ;; The slow tests take longer than the specified timeout. + ,@(if (any (cute string=? <> (%current-system)) + '("armhf-linux" "aarch64-linux")) + '((replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + (invoke "meson" "test" "--timeout-multiplier" "5")) + #t))) + '())))) + (home-page "https://github.com/freebayes/freebayes") + (synopsis "Haplotype-based variant detector") + (description "FreeBayes is a Bayesian genetic variant detector designed to find small polymorphisms, specifically SNPs (single-nucleotide polymorphisms), indels (insertions and deletions), MNPs (multi-nucleotide polymorphisms), and complex events (composite insertion and substitution events) smaller than the length of a short-read sequencing alignment.") - (license license:expat)))) + (license license:expat))) (define-public samblaster (package diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 9ca574a151..88abe29a1e 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -7,12 +7,14 @@ ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2016, 2017 David Craven <david@craven.ch> ;;; Copyright © 2017, 2018, 2020 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019, 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 nee <nee@cock.li> ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2018, 2019, 2020 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com> +;;; Copyright © 2021 Brice Waegeneire <brice@waegenei.re> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1095,3 +1097,124 @@ systems so that they can be added to the bootloader. It also works out how to boot existing GNU/Linux systems and detects what distribution is installed in order to add a suitable bootloader menu entry.") (license license:gpl2+))) + +(define-public ipxe + ;; XXX: 'BUILD_TIMESTAMP' is used to automatically select the newest version + ;; of iPXE if multiple iPXE drivers are loaded concurrently in a UEFI system. + ;; + ;; TODO: Bump this timestamp at each modifications of the package (not only + ;; for updates) by running: date +%s. + (let ((timestamp "1591706427")) + (package + (name "ipxe") + (version "1.21.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ipxe/ipxe") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (patches (search-patches "ipxe-reproducible-geniso.patch")) + (sha256 + (base32 + "1pkf1n1c0rdlzfls8fvjvi1sd9xjd9ijqlyz3wigr70ijcv6x8i9")))) + (build-system gnu-build-system) + (arguments + `(#:modules ((guix build utils) + (guix build gnu-build-system) + (guix base32) + (ice-9 string-fun) + (ice-9 regex) + (rnrs bytevectors)) + #:imported-modules ((guix base32) + ,@%gnu-build-system-modules) + #:make-flags + ;; XXX: 'BUILD_ID' is used to determine when another ROM in the + ;; system contains identical code in order to save space within the + ;; legacy BIOS option ROM area, which is extremely limited in size. + ;; It is supposed to be collision-free across all ROMs, to do so we + ;; use the truncated output hash of the package. + (let ((build-id + (lambda (out) + (let* ((nix-store (string-append + (or (getenv "NIX_STORE") "/gnu/store") + "/")) + (filename + (string-replace-substring out nix-store "")) + (hash (match:substring (string-match "[0-9a-z]{32}" + filename))) + (bv (nix-base32-string->bytevector hash))) + (format #f "0x~x" + (bytevector-u32-ref bv 0 (endianness big)))))) + (out (assoc-ref %outputs "out")) + (syslinux (assoc-ref %build-inputs "syslinux"))) + (list "ECHO_E_BIN_ECHO=echo" + "ECHO_E_BIN_ECHO_E=echo -e" + + ;; cdrtools' mkisofs will silently ignore a missing isolinux.bin! + ;; Luckily xorriso is more strict. + (string-append "ISOLINUX_BIN=" syslinux + "/share/syslinux/isolinux.bin") + (string-append "SYSLINUX_MBR_DISK_PATH=" syslinux + "/share/syslinux/isohdpfx.bin") + + ;; Build reproducibly. + (string-append "BUILD_ID_CMD=echo -n " (build-id out)) + (string-append "BUILD_TIMESTAMP=" ,timestamp) + "everything")) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'enter-source-directory + (lambda _ (chdir "src") #t)) + (add-after 'enter-source-directory 'set-options + (lambda _ + (substitute* "config/general.h" + (("^//(#define PING_CMD.*)" _ uncommented) uncommented) + (("^//(#define IMAGE_TRUST_CMD.*)" _ uncommented) + uncommented) + (("^#undef.*(DOWNLOAD_PROTO_HTTPS.*)" _ option) + (string-append "#define " option)) + (("^#undef.*(DOWNLOAD_PROTO_NFS.*)" _ option) + (string-append "#define " option))) + #t)) + (delete 'configure) ; no configure script + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (ipxe (string-append out "/lib/ipxe")) + (exts-re + "\\.(efi|efirom|iso|kkpxe|kpxe|lkrn|mrom|pxe|rom|usb)$") + (dirs '("bin" "bin-i386-linux" "bin-x86_64-pcbios" + "bin-x86_64-efi" "bin-x86_64-linux" "bin-i386-efi")) + (files (apply append + (map (lambda (dir) + (find-files dir exts-re)) dirs)))) + (for-each (lambda (file) + (let* ((subdir (dirname file)) + (fn (basename file)) + (tgtsubdir (cond + ((string=? "bin" subdir) "") + ((string-prefix? "bin-" subdir) + (string-drop subdir 4))))) + (install-file file + (string-append ipxe "/" tgtsubdir)))) + files)) + #t)) + (add-after 'install 'leave-source-directory + (lambda _ (chdir "..") #t))) + #:tests? #f)) ; no test suite + (native-inputs + `(("perl" ,perl) + ("syslinux" ,syslinux) + ("xorriso" ,xorriso))) + (home-page "https://ipxe.org") + (synopsis "PXE-compliant network boot firmware") + (description "iPXE is a network boot firmware. It provides a full PXE +implementation enhanced with additional features such as booting from: a web +server via HTTP, an iSCSI SAN, a Fibre Channel SAN via FCoE, an AoE SAN, a +wireless network, a wide-area network, an Infiniband network. It allows to +control the boot process with a script. You can use iPXE to replace the +existing PXE ROM on your network card, or you can chainload into iPXE to obtain +the features of iPXE without the hassle of reflashing.") + (license license:gpl2+)))) + diff --git a/gnu/packages/busybox.scm b/gnu/packages/busybox.scm index 7fc065f7ac..5af67e084d 100644 --- a/gnu/packages/busybox.scm +++ b/gnu/packages/busybox.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 John Darrington <jmd@gnu.org> ;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -33,7 +33,7 @@ (define-public busybox (package (name "busybox") - (version "1.32.0") + (version "1.32.1") (source (origin (method url-fetch) (uri (string-append @@ -41,7 +41,7 @@ version ".tar.bz2")) (sha256 (base32 - "12g63zsvzfz04wbyga8riyl8ils05riw4xf26cyiaasbs3qqfpf3")))) + "1vhd59qmrdyrr1q7rvxmyl96z192mxl089hi87yl0hcp6fyw8mwx")))) (build-system gnu-build-system) (arguments '(#:phases diff --git a/gnu/packages/check.scm b/gnu/packages/check.scm index 1300f9e1a6..d9a1fb3acf 100644 --- a/gnu/packages/check.scm +++ b/gnu/packages/check.scm @@ -7,7 +7,7 @@ ;;; Copyright © 2015, 2017 Cyril Roelandt <tipecaml@gmail.com> ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2015, 2016, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org> ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym+a@scratchpost.org> @@ -288,6 +288,55 @@ unit testing. Test output is in XML for automatic testing and GUI based for supervised tests.") (license license:lgpl2.1))) ; no copyright notices. LGPL2.1 is in the tarball +(define-public shunit2 + (package + (name "shunit2") + (version "2.1.8") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kward/shunit2") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "08vs0jjl3pfh100sjlw31x4638xj7fghr0j2g1zfikba8n1f9491")))) + (build-system gnu-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (delete 'configure) ; no configure script + (delete 'build) + (add-after 'patch-source-shebangs 'patch-more-shebangs + (lambda _ + (substitute* "shunit2" + (("#! /bin/sh") (string-append "#! " (which "sh"))) + (("/usr/bin/od") (which "od"))) + (substitute* "test_runner" + (("/bin/sh") (which "sh")) + (("/bin/bash") (which "bash"))) + #t)) + (replace 'check + (lambda* (#:key tests? #:allow-other-keys) + (when tests? + ;; This test is buggy in the build container. + (delete-file "shunit2_misc_test.sh") + (invoke "sh" "test_runner")) + #t)) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (install-file "shunit2" + (string-append (assoc-ref outputs "out") + "/bin")) + #t))))) + (home-page "https://github.com/kward/shunit2") + (synopsis "@code{xUnit} based unit testing for Unix shell scripts") + (description "@code{shUnit2} was originally developed to provide a +consistent testing solution for @code{log4sh}, a shell based logging framework +similar to @code{log4j}. It is designed to work in a similar manner to JUnit, +PyUnit and others.") + (license license:asl2.0))) + ;; When dependent packages upgraded to use newer version of catch, this one should ;; be removed. (define-public catch-framework diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm index 175b1a74ef..a994b387bb 100644 --- a/gnu/packages/chromium.scm +++ b/gnu/packages/chromium.scm @@ -302,8 +302,8 @@ (string-append "ungoogled-chromium-" category "-" name)))) (sha256 (base32 hash)))) -(define %chromium-version "87.0.4280.88") -(define %ungoogled-revision "b78cb927fa8beaee0ddfb4385277edb96444c40f") +(define %chromium-version "87.0.4280.141") +(define %ungoogled-revision "483a1bae4eee601c7d0a4a63499380e40e4f8a44") (define %debian-revision "debian/84.0.4147.105-1") (define %debian-patches @@ -321,7 +321,7 @@ (string-take %ungoogled-revision 7))) (sha256 (base32 - "0w2137w8hfcgl6f938hqnb4ffp33v5r8vdzxrvs814w7dszkiqgg")))) + "0r09d27jrdz01rcwifchbq7ksh2bac15h8svq18jx426mr56dzla")))) (define %guix-patches (list (local-file @@ -443,7 +443,7 @@ %chromium-version ".tar.xz")) (sha256 (base32 - "1h09g9b2zxad85vd146ymvg3w2kpngpi78yig3dn1vrmhwr4aiiy")) + "0x9k809m36pfirnw2vnr9pk93nxdbgrvna0xf1rs3q91zkbr2x8l")) (modules '((guix build utils))) (snippet (force ungoogled-chromium-snippet)))) (build-system gnu-build-system) diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm index 1eab34a517..56350089f5 100644 --- a/gnu/packages/compression.scm +++ b/gnu/packages/compression.scm @@ -1816,14 +1816,14 @@ Clzip is intended to be fully compatible with the regular lzip package.") (define-public lzlib (package (name "lzlib") - (version "1.11") + (version "1.12") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/lzip/lzlib/" "lzlib-" version ".tar.gz")) (sha256 - (base32 "0djdj4sg33rzi4k84cygvnp09bfsv6i8wy2k7i67rayib63myp3c")))) + (base32 "1c9pwd6by8is4z8bs6j306jyy6pgm2dvsn4fr7fg2b5m5qj88pcf")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -2075,13 +2075,13 @@ reading from and writing to ZIP archives. ") (define-public zutils (package (name "zutils") - (version "1.9") + (version "1.10") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/zutils/zutils-" version ".tar.lz")) (sha256 - (base32 "0y2wm8wqr1wi1b1fv45dn50njv4q81p6ifx0279ji1bq56qkrn2r")))) + (base32 "15dimqp8zlqaaa2l46r22srp1py38mlmn69ph1j5fmrd54w43m0d")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/cpp.scm b/gnu/packages/cpp.scm index 45d3faeafb..ca8f7a9f80 100644 --- a/gnu/packages/cpp.scm +++ b/gnu/packages/cpp.scm @@ -808,3 +808,25 @@ code will be mixed in with the actual programming logic. This implementation provides a number of utilities to make coding with expected cleaner.") (home-page "https://tl.tartanllama.xyz/") (license license:cc0))) + +(define-public magic-enum + (package + (name "magic-enum") + (version "0.7.2") + (home-page "https://github.com/Neargye/magic_enum") + (source (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "07j5zdf3vkliwrcv6k663k35akn7qp23794sz2mnvkj9hbv9s8cx")))) + (build-system cmake-build-system) + (native-inputs + `(("gcc" ,gcc-9))) + (synopsis "C++17 header only library for compile time reflection of enums") + (description "Magic Enum offers static reflection of enums, with +conversions to and from strings, iteration and related functionality.") + (license license:expat))) diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm index 40f8e82c34..874a77c552 100644 --- a/gnu/packages/cran.scm +++ b/gnu/packages/cran.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2016, 2017 Ben Woodcroft <donttrustben@gmail.com> @@ -126,14 +126,14 @@ files and provide more explicit control over line endings.") (define-public r-diffobj (package (name "r-diffobj") - (version "0.3.2") + (version "0.3.3") (source (origin (method url-fetch) (uri (cran-uri "diffobj" version)) (sha256 (base32 - "0v18zz14g8ppzmj1d997rdmsfh327ml4wvpmfx168lravdsk5ym2")))) + "1x3d5sk8mk0s2d7dq8wxi1zv6krlx33n22ls2jwnb58b8xrmakj1")))) (properties `((upstream-name . "diffobj"))) (build-system r-build-system) (propagated-inputs `(("r-crayon" ,r-crayon))) @@ -178,14 +178,14 @@ easier.") (define-public r-rticles (package (name "r-rticles") - (version "0.17") + (version "0.18") (source (origin (method url-fetch) (uri (cran-uri "rticles" version)) (sha256 (base32 - "1wbwva5n88dw3vvhcrlzkr58cv03hyx0dqgfmxj7d0dgf4ichr3c")))) + "1srczjy9dqw06glrv95798xsg462kfbbwm3yk1fv1zhpz9jhakwv")))) (properties `((upstream-name . "rticles"))) (build-system r-build-system) (propagated-inputs @@ -639,13 +639,13 @@ objects.") (define-public r-mboost (package (name "r-mboost") - (version "2.9-3") + (version "2.9-4") (source (origin (method url-fetch) (uri (cran-uri "mboost" version)) (sha256 (base32 - "1qp5c43kc0939sss5w3hhn794lbi69wgfsa31sq4c8vzh35pjqmf")))) + "1dgyc38axfk2a430wsdnnk76xikizkyxf5r0l1kbp6cacrx6idz0")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -1024,19 +1024,17 @@ into a pipeline of data manipulation and visualisation.") (define-public r-httpuv (package (name "r-httpuv") - (version "1.5.4") + (version "1.5.5") (source (origin (method url-fetch) (uri (cran-uri "httpuv" version)) (sha256 (base32 - "066rprqvz9qln6xd85x1yh1wbbmzd157xjl8zq1zbgr8l6347inm")) + "05rir03xwamwfq5691vx0x957sgmr4i8iv5vpx5rv1f74y4wkrhb")) ;; Unvendor bundled libraries. As of 1.5.4 the vendored libuv ;; only contains fixes for building on Solaris. - (patches (search-patches "r-httpuv-1.5.4-unvendor-libuv.patch")) - (modules '((guix build utils) - (ice-9 ftw) - (srfi srfi-1))) + (patches (search-patches "r-httpuv-1.5.5-unvendor-libuv.patch")) + (modules '((guix build utils))) (snippet `(begin (delete-file-recursively "src/libuv") @@ -1080,13 +1078,13 @@ particularly easy to create complete web applications using httpuv alone.") (define-public r-jsonlite (package (name "r-jsonlite") - (version "1.7.1") + (version "1.7.2") (source (origin (method url-fetch) (uri (cran-uri "jsonlite" version)) (sha256 (base32 - "1wygpnycmyf339x92hwapqk7nc1gs9cadx890b809a9spjhah41a")))) + "1lhzcpz9clwq04i5m6jzkvw9x03pwlqrixv4l9xzchjr8d84nd86")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -1106,13 +1104,13 @@ in systems and applications.") (define-public r-servr (package (name "r-servr") - (version "0.20") + (version "0.21") (source (origin (method url-fetch) (uri (cran-uri "servr" version)) (sha256 (base32 - "0px75vkc6q4iwbirr27bbrbpv0v9ial7zijnbd6dhjccwxl3x1l3")))) + "12fk585hmz735v4hra8da9wld1fmd67byqnf95m7jjyh7l3dmh1z")))) (build-system r-build-system) (propagated-inputs `(("r-httpuv" ,r-httpuv) @@ -1130,13 +1128,13 @@ directory.") (define-public r-htmltools (package (name "r-htmltools") - (version "0.5.0") + (version "0.5.1") (source (origin (method url-fetch) (uri (cran-uri "htmltools" version)) (sha256 (base32 - "07fjznax5sin563ddnzlb7iwc8b39wzf7ymjn66pbmxgskijq2pz")))) + "01v33zcs9rv16r6v8ckqh92k5axj6skmk9hyakmqqmgra522xj3a")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -1151,13 +1149,13 @@ directory.") (define-public r-htmlwidgets (package (name "r-htmlwidgets") - (version "1.5.2") + (version "1.5.3") (source (origin (method url-fetch) (uri (cran-uri "htmlwidgets" version)) (sha256 (base32 - "0072wlkl58lav3qszzqw6pmx8qra4784r0yb6rx4lg7rbrik6335")))) + "0a8g7wqd3qxnhwkm9c9bkzg29db7gvjiaa5y038ln8nch8qq7981")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -1728,14 +1726,14 @@ in R and Shiny via the D3 visualization library.") (define-public r-crosstalk (package (name "r-crosstalk") - (version "1.1.0.1") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "crosstalk" version)) (sha256 (base32 - "03ihj7cimkklrbad9zic78xsrfcisygmgy859hqnx0hiph80p9rn")))) + "1n6c6s7a6yxiwvva71x6bzcrim8xprl5s01fqiy61yq0y3vk8cpd")))) (build-system r-build-system) (propagated-inputs `(("r-htmltools" ,r-htmltools) @@ -2143,13 +2141,13 @@ initiative to bring PASSTEC 2000 functionalities to R.") (define-public r-partykit (package (name "r-partykit") - (version "1.2-10") + (version "1.2-11") (source (origin (method url-fetch) (uri (cran-uri "partykit" version)) (sha256 (base32 - "1jg68rqhk2r0h2hk50xl99zp56b1nfdcam06kfvssqrkgkavkswf")))) + "00n6a74x257m2jk7jadjfxaclihxqpqwh356bgxmq8rag0nk70rs")))) (build-system r-build-system) (propagated-inputs `(("r-formula" ,r-formula) @@ -2241,13 +2239,13 @@ processes. Most of its code is based on the @code{psutil} Python package.") (define-public r-pkgbuild (package (name "r-pkgbuild") - (version "1.1.0") + (version "1.2.0") (source (origin (method url-fetch) (uri (cran-uri "pkgbuild" version)) (sha256 - (base32 "1gdbrjq4kiwm45c6pb23mp327qyjvslhyf72ca4zhlzwc5vgp6xk")))) + (base32 "0qx920h2viwjg10va81nj0xja495d8ni6vcc25ggvzki6a6k069f")))) (build-system r-build-system) (propagated-inputs `(("r-callr" ,r-callr) @@ -2298,13 +2296,13 @@ you to rapidly iterate while developing a package.") (define-public r-rcpp (package (name "r-rcpp") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (cran-uri "Rcpp" version)) (sha256 - (base32 "012wbj446k1wz6bp6bpf6h77ypvcsw69xvnax6qf6vyc7dj2qimq")))) + (base32 "04ph6lm36cmvz01ng53pvvf3jxvzsn9smyflkfc7l3q0pib4gwn9")))) (build-system r-build-system) (home-page "http://www.rcpp.org") (synopsis "Seamless R and C++ integration") @@ -2473,14 +2471,14 @@ validation and filtering on the values, making options invisible or private.") (define-public r-circlize (package (name "r-circlize") - (version "0.4.11") + (version "0.4.12") (source (origin (method url-fetch) (uri (cran-uri "circlize" version)) (sha256 (base32 - "1s84xl7kv3qc1261xxaq4aqh64gwywhacsf5nh6yf8djw0d1w42d")))) + "1x2j6a80bb4fly3dm91ias964s1gb1cmzj3lyh69ikwjaam0rdmk")))) (build-system r-build-system) (propagated-inputs `(("r-colorspace" ,r-colorspace) @@ -2581,14 +2579,14 @@ compare different dendrograms to one another.") (define-public r-getoptlong (package (name "r-getoptlong") - (version "1.0.4") + (version "1.0.5") (source (origin (method url-fetch) (uri (cran-uri "GetoptLong" version)) (sha256 (base32 - "0l9pa9dx8pcg3j7jn4b9k98g7r5vdsvnmf6apnifzm57mc0vlkg6")))) + "00fpm6nd3kqa2ikasxa62jzywi46fvvmx1mdavcp5yrxxn37j8wc")))) (properties `((upstream-name . "GetoptLong"))) (build-system r-build-system) (inputs @@ -2718,13 +2716,13 @@ quantities.") (define-public r-restrserve (package (name "r-restrserve") - (version "0.4.0") + (version "0.4.1") (source (origin (method url-fetch) (uri (cran-uri "RestRserve" version)) (sha256 - (base32 "07mm65yxzpwlg6x3lsggj41v8nl4m6v9mszhqjpgj19v3yxvwgi0")))) + (base32 "1486hrzj5q5w4nbrsbqlv7vv20ly01y90qc2vygl5syzwvyjd422")))) (build-system r-build-system) (propagated-inputs `(("r-checkmate" ,r-checkmate) @@ -2774,20 +2772,22 @@ package also provides a C++ API, that works with or without Rcpp.") (define-public r-ggally (package (name "r-ggally") - (version "2.0.0") + (version "2.1.0") (source (origin (method url-fetch) (uri (cran-uri "GGally" version)) (sha256 (base32 - "1gkmpzh1yvwvypkw0nwqv3gsf6za3220wig3rfv8g23kss60rl1s")))) + "0lvcvlc8p2cii7rqx7m81f7cv3kk9mlf7cbbgv7l75g7ljw8dyvz")))) (properties `((upstream-name . "GGally"))) (build-system r-build-system) (inputs - `(("libressl" ,libressl))) + `(("openssl" ,openssl))) (propagated-inputs - `(("r-ggplot2" ,r-ggplot2) + `(("r-dplyr" ,r-dplyr) + ("r-forcats" ,r-forcats) + ("r-ggplot2" ,r-ggplot2) ("r-gtable" ,r-gtable) ("r-lifecycle" ,r-lifecycle) ("r-plyr" ,r-plyr) @@ -2795,7 +2795,8 @@ package also provides a C++ API, that works with or without Rcpp.") ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-reshape" ,r-reshape) ("r-rlang" ,r-rlang) - ("r-scales" ,r-scales))) + ("r-scales" ,r-scales) + ("r-tidyr" ,r-tidyr))) (home-page "https://ggobi.github.io/ggally") (synopsis "Extension to ggplot2") (description @@ -2830,13 +2831,13 @@ most popular ones.") (define-public r-sp (package (name "r-sp") - (version "1.4-4") + (version "1.4-5") (source (origin (method url-fetch) (uri (cran-uri "sp" version)) (sha256 - (base32 "0zzw1gfic5b311vrbkmmmaap3yllgd192af067l5ymm885jqm1zs")))) + (base32 "1nh9izsnszzm5kbq461w8bi0yh7fqzb74b2zmpg5qis0slbb5vkb")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -3387,14 +3388,14 @@ contexts.") (define-public r-squarem (package (name "r-squarem") - (version "2020.5") + (version "2021.1") (source (origin (method url-fetch) (uri (cran-uri "SQUAREM" version)) (sha256 (base32 - "1f0j5pbsz2wi7dfl8h8gvdl991bjywiwkd2f6z0xgkh87kl5y0b4")))) + "0n1s32l9p4vdm3h5q6g43s0qbpzry08difsh0yay80wrla6f3rb6")))) (properties `((upstream-name . "SQUAREM"))) (build-system r-build-system) (home-page "https://coah.jhu.edu/people/Faculty_personal_Pages/Varadhan.html") @@ -3552,14 +3553,14 @@ dimensioned arrays.") (define-public r-rmysql (package (name "r-rmysql") - (version "0.10.20") + (version "0.10.21") (source (origin (method url-fetch) (uri (cran-uri "RMySQL" version)) (sha256 (base32 - "0lv9m6zpm8dgv7yixr6xhw379vbq45d7n7gkrmjrppdj8vcih77i")))) + "0cbb5ln9iigl816nzvsls9zil5qlfr8yv2aginapqv6n69nz0srs")))) (properties `((upstream-name . "RMySQL"))) (build-system r-build-system) (inputs @@ -3765,14 +3766,14 @@ problems as well as resampling based estimators of prediction error.") (define-public r-psych (package (name "r-psych") - (version "2.0.9") + (version "2.0.12") (source (origin (method url-fetch) (uri (cran-uri "psych" version)) (sha256 (base32 - "0wdh580a0psbdil28n0d85hnp42wmn11hcbnihjq8r7h54drgzpn")))) + "0k5dw5nb7kx7f21b0z01dry99qcpnk7iaicv7xq9d35wv2hx8wca")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice) @@ -3818,14 +3819,14 @@ by base R methods related to model fitting.") (define-public r-broom (package (name "r-broom") - (version "0.7.2") + (version "0.7.3") (source (origin (method url-fetch) (uri (cran-uri "broom" version)) (sha256 (base32 - "18qkgw5f46cfr8sc7r9a261ivn3s4w88sdj653gaa20723179300")))) + "0bxwmqj37m06ci378xqlf7kar7pg5g903i1vnrv4i256dkj50mny")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -3922,18 +3923,19 @@ for certain use cases.") (define-public r-ggrepel (package (name "r-ggrepel") - (version "0.8.2") + (version "0.9.1") (source (origin (method url-fetch) (uri (cran-uri "ggrepel" version)) (sha256 (base32 - "1qaifn3dazdqbqlii210xhw7yf142iw7g9p2axmmxbz90p0by08d")))) + "1z5xyr5f4aryy0v1gzz9m8m4s5fzzwbrf0fxll1nbflr8xnr3yr9")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-rcpp" ,r-rcpp) + ("r-rlang" ,r-rlang) ("r-scales" ,r-scales))) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -4228,14 +4230,14 @@ programming} (SQP) based solver).") (define-public r-hardyweinberg (package (name "r-hardyweinberg") - (version "1.6.9") + (version "1.7.1") (source (origin (method url-fetch) (uri (cran-uri "HardyWeinberg" version)) (sha256 (base32 - "0l93r1hkr483hp4yd7rm7mdkgl5lp0nkvv0inahj3r1cplgfxpvs")))) + "0afjz818yvaq3akvgpy4irnlpspd2dj71qkrwj81lm9y36ypwlw6")))) (properties `((upstream-name . "HardyWeinberg"))) (build-system r-build-system) (propagated-inputs @@ -4539,20 +4541,22 @@ plotting. a three dimensional point cloud.") (define-public r-ggridges (package (name "r-ggridges") - (version "0.5.2") + (version "0.5.3") (source (origin (method url-fetch) (uri (cran-uri "ggridges" version)) (sha256 (base32 - "03pz257aw0mkh5k75rby9givkc1ky3n5scvhjhjiz9vry9fpffmh")))) + "0bmlqy1p6rac90af97ffpdi6php7dblx66l2hcm8ljidgyqzmspm")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) ("r-plyr" ,r-plyr) ("r-scales" ,r-scales) ("r-withr" ,r-withr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/clauswilke/ggridges") (synopsis "Ridgeline plots in ggplot2") (description @@ -4798,13 +4802,13 @@ iVAT).") (define-public r-xfun (package (name "r-xfun") - (version "0.19") + (version "0.20") (source (origin (method url-fetch) (uri (cran-uri "xfun" version)) (sha256 - (base32 "15yyigkl1g9w9d7097hrm94dxn1af333ywr5xdw78qqrw6npn0iv")))) + (base32 "043wv9qihs3r29810mf8ajpn2iks1bxq44wbxz8sfpix5b8kjhi8")))) (build-system r-build-system) ;; knitr itself depends on xfun #; @@ -4861,14 +4865,14 @@ to variables on the left-hand side of the assignment.") (define-public r-vctrs (package (name "r-vctrs") - (version "0.3.5") + (version "0.3.6") (source (origin (method url-fetch) (uri (cran-uri "vctrs" version)) (sha256 (base32 - "1k1mcq7jkpc55dsm0wb4k8asc1irvmi5884v3ap4sabf22c5sq0i")))) + "09ddxgzyah7lw42hn6n8fynsixf43s10jamsf94d2aidky63czfz")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -4948,14 +4952,14 @@ terminals.") (define-public r-tinytex (package (name "r-tinytex") - (version "0.27") + (version "0.28") (source (origin (method url-fetch) (uri (cran-uri "tinytex" version)) (sha256 (base32 - "10hbc9h1fsw91w5f4fjcaqy68b3n1wr6pml01fnkf3pdjiri5sj0")))) + "11pa1q7gl17ala74lz10qbghk2yqanl9pylwvi9b4kmhx856b83n")))) (build-system r-build-system) (propagated-inputs `(("r-xfun" ,r-xfun))) @@ -5496,14 +5500,14 @@ sample Robust Rank-Order Distributional Test.") (define-public r-expm (package (name "r-expm") - (version "0.999-5") + (version "0.999-6") (source (origin (method url-fetch) (uri (cran-uri "expm" version)) (sha256 (base32 - "0y98ya8rhy891nysjlzzy7kcm13dsz8gvxwzvbkmcp1xx0vicxc7")))) + "1p5dapwv8ycxaysgi6imnby04i4kh1c5a2czqa4wygz0s8pr2y9c")))) (build-system r-build-system) (propagated-inputs `(("r-matrix" ,r-matrix))) (native-inputs `(("gfortran" ,gfortran))) @@ -6042,14 +6046,14 @@ specific S3-method.") (define-public r-vim (package (name "r-vim") - (version "6.0.0") + (version "6.1.0") (source (origin (method url-fetch) (uri (cran-uri "VIM" version)) (sha256 (base32 - "0ddhca4v912q82rjpf1qld6i6g2c381g0v5b4hbnygr3lm6a7wiv")))) + "1a8aw0ysaf0al95m2la2zx1p3g5mnwqx0x30br1s1dqqkfnv57hz")))) (properties `((upstream-name . "VIM"))) (build-system r-build-system) (propagated-inputs @@ -6530,14 +6534,14 @@ Python's @url{https://github.com/ActiveState/appdirs,Appdirs} to R.") (define-public r-renv (package (name "r-renv") - (version "0.12.3") + (version "0.12.5") (source (origin (method url-fetch) (uri (cran-uri "renv" version)) (sha256 (base32 - "0k31x19gzpffb701c76p840cip10c0dh8yv3wcs30gqi0ag1g77l")))) + "0wfq1z5glng6jrfxj25mjhp129z6468gaszr9ggks5gp8lrwszzh")))) (properties `((upstream-name . "renv"))) (build-system r-build-system) (native-inputs @@ -6867,19 +6871,20 @@ clustering.") (define-public r-factominer (package (name "r-factominer") - (version "2.3") + (version "2.4") (source (origin (method url-fetch) (uri (cran-uri "FactoMineR" version)) (sha256 (base32 - "0ldgf3daksh6lpblhqys67m4mxqx3q9s9n5plfam6dwshfik0ky6")))) + "0lg8n9fxxk46nchnj4pbpqqf4swxfsq7r9jzr36dmd36kb7avqxr")))) (properties `((upstream-name . "FactoMineR"))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) ("r-cluster" ,r-cluster) + ("r-dt" ,r-dt) ("r-ellipse" ,r-ellipse) ("r-flashclust" ,r-flashclust) ("r-ggplot2" ,r-ggplot2) @@ -6888,6 +6893,8 @@ clustering.") ("r-leaps" ,r-leaps) ("r-mass" ,r-mass) ("r-scatterplot3d" ,r-scatterplot3d))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://factominer.free.fr") (synopsis "Multivariate exploratory data analysis and data mining") (description @@ -6938,14 +6945,14 @@ steps and provides ggplot2-based elegant data visualization.") (define-public r-fansi (package (name "r-fansi") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "fansi" version)) (sha256 (base32 - "028ywjy538psnmdnddvy5jr3idzffr4hikzr4x97x0m30g4fws9w")))) + "0i7wmaflkjzdbggqv31wnsj3m9imvc6db429vyjk64xrz1ng1vd2")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) ; for vignettes @@ -7147,18 +7154,17 @@ references and Rd files.") (define-public r-officer (package (name "r-officer") - (version "0.3.15") + (version "0.3.16") (source (origin (method url-fetch) (uri (cran-uri "officer" version)) (sha256 (base32 - "1s9hrkdx105c1plpxywv68bmp8hvvxbdizhwx81fxr79fhj62x5j")))) + "1ls5kp70jfxrzxxb3xrg8sn2fyk6qd7rmx23n5jxi7z7850avjrj")))) (build-system r-build-system) (propagated-inputs - `(("r-magrittr" ,r-magrittr) - ("r-r6" ,r-r6) + `(("r-r6" ,r-r6) ("r-uuid" ,r-uuid) ("r-xml2" ,r-xml2) ("r-zip" ,r-zip))) @@ -7180,14 +7186,14 @@ to help insert or delete content at a specific location in the document.") (define-public r-profilemodel (package (name "r-profilemodel") - (version "0.6.0") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "profileModel" version)) (sha256 (base32 - "0yq8hy43h62hlz8bbf9ila4a3xcwizi1if27b78xc5y857ncwad8")))) + "01m5nb8cmq0aq555pxk2a99182si65hhmn68yn9nal2j3zl2bp4i")))) (properties `((upstream-name . "profileModel"))) (build-system r-build-system) (home-page "https://github.com/ikosmidis/profileModel") @@ -7409,14 +7415,14 @@ other add-on packages.") (define-public r-insight (package (name "r-insight") - (version "0.11.1") + (version "0.12.0") (source (origin (method url-fetch) (uri (cran-uri "insight" version)) (sha256 (base32 - "1m95xfvai1kbzqxdggjvdbk6ax2dg4v2lrfpqn7v607g2n77n2k0")))) + "0gkvcw9d729ql1gfrpxzgrag4xafd0hchrdww215qz11ma1rzy7s")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -7463,14 +7469,14 @@ vice versa), or to deal with multiple declared missing values.") (define-public r-sjmisc (package (name "r-sjmisc") - (version "2.8.5") + (version "2.8.6") (source (origin (method url-fetch) (uri (cran-uri "sjmisc" version)) (sha256 (base32 - "0xl0s56d13bia89ai619rcr0fzbvc2k8f7hjxik4qp0g4v87zzlk")))) + "1nfrkv5jfnwb85blpv7yk7xac1myzi2c30bqcf7xicniknkjwycr")))) (build-system r-build-system) (propagated-inputs `(("r-dplyr" ,r-dplyr) @@ -7514,23 +7520,25 @@ hypothesis of normality.") (define-public r-moonbook (package (name "r-moonbook") - (version "0.2.3") + (version "0.2.4") (source (origin (method url-fetch) (uri (cran-uri "moonBook" version)) (sha256 (base32 - "0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6")))) + "0z78pzc8sr2g19xjdd9cmai4iqyifmh79gj8x40ddww6a27dalry")))) (properties `((upstream-name . "moonBook"))) (build-system r-build-system) (propagated-inputs `(("r-magrittr" ,r-magrittr) ("r-nortest" ,r-nortest) - ("r-purrr" ,r-purrr) ("r-sjmisc" ,r-sjmisc) ("r-stringr" ,r-stringr) - ("r-survival" ,r-survival))) + ("r-survival" ,r-survival) + ("r-ztable" ,r-ztable))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/cardiomoon/moonBook") (synopsis "Functions and datasets for the book by Keon-Woong Moon") (description @@ -7769,14 +7777,14 @@ Group (Non-)Overlap considerations.") (define-public r-deriv (package (name "r-deriv") - (version "4.1.1") + (version "4.1.2") (source (origin (method url-fetch) (uri (cran-uri "Deriv" version)) (sha256 (base32 - "1fzchsignpb7cpizbf6l8v9k1nkmaf4r4j3mnxz0csl2g2npi1xc")))) + "1j9sh1w9lsnnhlh59g4ghykyfx46rxh380s8imvm7pzna7rw7c64")))) (properties `((upstream-name . "Deriv"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/Deriv") @@ -7901,14 +7909,14 @@ containing one or more SNPs that evolved under directional selection.") (define-public r-proc (package (name "r-proc") - (version "1.16.2") + (version "1.17.0.1") (source (origin (method url-fetch) (uri (cran-uri "pROC" version)) (sha256 (base32 - "0apwa5zzqh74pjnvf5a1s5qf6i9r5h44jdllfrwymkd2v479d2xn")))) + "1gd6a47d6bcfd237s3g7r9rws8x2sg7zrvq5k6clpc41zdpp4712")))) (properties `((upstream-name . "pROC"))) (build-system r-build-system) (propagated-inputs @@ -8176,13 +8184,13 @@ and coverage methods to tune the choice of threshold.") (define-public r-ggstance (package (name "r-ggstance") - (version "0.3.4") + (version "0.3.5") (source (origin (method url-fetch) (uri (cran-uri "ggstance" version)) (sha256 - (base32 "0aqz3dn02cgij018a4sglqwrwr9dzzj12l8xr1064q7hfd4f64m1")))) + (base32 "0jz9vvnmcc6a38n8nzr458r65sna23bgn5r8mxdhzdlyqibihr7d")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -8202,13 +8210,13 @@ and coverage methods to tune the choice of threshold.") (define-public r-mosaiccore (package (name "r-mosaiccore") - (version "0.8.0") + (version "0.9.0") (source (origin (method url-fetch) (uri (cran-uri "mosaicCore" version)) (sha256 - (base32 "00va6x1i8d3wkm1bgsms9dsjfn5a1l43prpl9pqirgq3zm85hrqj")))) + (base32 "1h3ixzna4xy42rdnd89jj0v9q0riy3fnkd33z6l5c0zaidzm58fz")))) (properties `((upstream-name . "mosaicCore"))) (build-system r-build-system) (propagated-inputs @@ -8222,26 +8230,62 @@ and coverage methods to tune the choice of threshold.") "Common utilities used in other Mosaic family packages are collected here.") (license license:gpl2+))) +(define-public r-labelled + (package + (name "r-labelled") + (version "2.7.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "labelled" version)) + (sha256 + (base32 + "1nsb0mh0jg7gggc41b6v55nmfq07g0qn9fy55x4jws5dscs6pdmi")))) + (properties `((upstream-name . "labelled"))) + (build-system r-build-system) + (propagated-inputs + `(("r-dplyr" ,r-dplyr) + ("r-haven" ,r-haven) + ("r-lifecycle" ,r-lifecycle) + ("r-pillar" ,r-pillar) + ("r-rlang" ,r-rlang) + ("r-tidyr" ,r-tidyr) + ("r-vctrs" ,r-vctrs))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "http://larmarange.github.io/labelled/") + (synopsis "Manipulating labelled data") + (description + "This package provides useful functions to deal with the +@code{haven_labelled} and @code{haven_labelled_spss} classes introduced by the +haven package. ") + (license license:gpl3))) + (define-public r-ggformula (package (name "r-ggformula") - (version "0.9.4") + (version "0.10.1") (source (origin (method url-fetch) (uri (cran-uri "ggformula" version)) (sha256 - (base32 "04vdhg1bbc1psrx9ggaphz7cx4fw5xsmhkqpqfcg2w4ba2bjy46f")))) + (base32 "1ph5jd8svk8hmshi894vmmpq3zwgdmf4yn3gmdlkad68z8jynhsp")))) (build-system r-build-system) (propagated-inputs `(("r-ggforce" ,r-ggforce) ("r-ggplot2" ,r-ggplot2) + ("r-ggridges" ,r-ggridges) ("r-ggstance" ,r-ggstance) + ("r-labelled" ,r-labelled) ("r-magrittr" ,r-magrittr) ("r-mosaiccore" ,r-mosaiccore) ("r-rlang" ,r-rlang) + ("r-scales" ,r-scales) ("r-stringr" ,r-stringr) ("r-tibble" ,r-tibble))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/ProjectMOSAIC/ggformula/") (synopsis "Formula interface for the @code{r-ggplot2}") (description @@ -8254,13 +8298,13 @@ while providing the intuitive capabilities of @code{r-ggplot2}.") (define-public r-mosaicdata (package (name "r-mosaicdata") - (version "0.20.1") + (version "0.20.2") (source (origin (method url-fetch) (uri (cran-uri "mosaicData" version)) (sha256 - (base32 "05mrwvs7awhpv2gvk0jjva74gndfgh2cl17slxcjhwlpga8nmxji")))) + (base32 "0h3f5fgzkzjfgf3ml0qa5j52921y6wy6jgggxmhs31bs8fd4srg4")))) (properties `((upstream-name . "mosaicData"))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/mosaicData/") @@ -8868,14 +8912,14 @@ samples is large and the number of mixture components is not too large.") (define-public r-magick (package (name "r-magick") - (version "2.5.2") + (version "2.6.0") (source (origin (method url-fetch) (uri (cran-uri "magick" version)) (sha256 (base32 - "0myvryya7b4bbw0hs4jqflrbdffmg78kz28gbybw3yc7zwc7sqxx")))) + "1k4fqhxh2ppynl56fs044wpn4wk6gbv6lwp2x4x7j67zwcv56n36")))) (build-system r-build-system) (inputs `(("imagemagick" ,imagemagick) @@ -9310,14 +9354,14 @@ Hothorn, Westfall, 2010, CRC Press).") (define-public r-emmeans (package (name "r-emmeans") - (version "1.5.2-1") + (version "1.5.3") (source (origin (method url-fetch) (uri (cran-uri "emmeans" version)) (sha256 (base32 - "0ndbjhglycdycppz9lbj3vhiqv2mp0z6h4w8fbyjziqx15ai5h59")))) + "11x7bn260v91gb7qri1pq54l339zm4msa5frc8saqb9ykbg4dby5")))) (build-system r-build-system) (propagated-inputs `(("r-estimability" ,r-estimability) @@ -9361,13 +9405,13 @@ Cohen (1988).") (define-public r-libcoin (package (name "r-libcoin") - (version "1.0-6") + (version "1.0-7") (source (origin (method url-fetch) (uri (cran-uri "libcoin" version)) (sha256 - (base32 "0njfdbz4mkyasxm80p0fb0qibvzz7kdzddn8ybj2k6y8bx0w3bs8")))) + (base32 "1vb21pw3vpv2pdnfcddw2bax13v0dg656r28j0p8njcyhwk89xln")))) (build-system r-build-system) (propagated-inputs `(("r-mvtnorm" ,r-mvtnorm))) (home-page "https://cran.r-project.org/web/packages/libcoin") @@ -9380,14 +9424,14 @@ and permutation inference in the framework of Strasser and Weber (1999).") (define-public r-coin (package (name "r-coin") - (version "1.3-1") + (version "1.4-0") (source (origin (method url-fetch) (uri (cran-uri "coin" version)) (sha256 (base32 - "0qi03fyqw42a2vnqcia5l2m1mzyarj2q1iblknx9n19bdsd53qjx")))) + "1n2ad4m3zw8px6yc0h750k59pci3fqpnr742hhvsqirrwcdzp6zv")))) (build-system r-build-system) (propagated-inputs `(("r-libcoin" ,r-libcoin) @@ -9407,14 +9451,14 @@ correlation, censored, ordered and multivariate problems.") (define-public r-bayesplot (package (name "r-bayesplot") - (version "1.7.2") + (version "1.8.0") (source (origin (method url-fetch) (uri (cran-uri "bayesplot" version)) (sha256 (base32 - "0aqy4bfjq1fmds0vpacsmqih528cp8wk4v4w0balzkph6zqzpwcl")))) + "0j69a78l5z0wyxcz607amaa4jc8kwwvcia9wxyir65b8ks9gj1d6")))) (build-system r-build-system) (inputs `(("pandoc" ,pandoc) @@ -9471,13 +9515,13 @@ detection, parallelism through BLAS and parallel user templates.") (define-public r-sjstats (package (name "r-sjstats") - (version "0.18.0") + (version "0.18.1") (source (origin (method url-fetch) (uri (cran-uri "sjstats" version)) (sha256 - (base32 "17b1fcrhgjw66qa8zk2jj1bvz3vp5bnjn3p4y1wsg5ng5nxq8jz0")))) + (base32 "1cv80yjnyh6qihxf57zivihhia20gibr5f03x8aspy6382wnwlka")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -9573,14 +9617,14 @@ ROPE percentage and pd).") (define-public r-performance (package (name "r-performance") - (version "0.6.0") + (version "0.6.1") (source (origin (method url-fetch) (uri (cran-uri "performance" version)) (sha256 (base32 - "0ai1pp6k0pmmjgpj7hc53s0h258c4mljln8lv3nd9r7kzrmic0gc")))) + "0wz2zc98r99pg6r4l09qxxzv1fwxwp1md6wmhay401568kd8h5zn")))) (build-system r-build-system) (propagated-inputs `(("r-bayestestr" ,r-bayestestr) @@ -9600,14 +9644,14 @@ effects models and Bayesian models.") (define-public r-ggeffects (package (name "r-ggeffects") - (version "1.0.0") + (version "1.0.1") (source (origin (method url-fetch) (uri (cran-uri "ggeffects" version)) (sha256 (base32 - "18diwssc5vij5g7zh9mv0ppcv3xgfi2jqzfx9srxfahg05sr1xdq")))) + "1c5rvycaqp7zp1j6j17c84v8nlpi0w7bhfxmcha4n37m0snk1kgy")))) (build-system r-build-system) (propagated-inputs `(("r-insight" ,r-insight) @@ -9630,14 +9674,14 @@ results using @code{ggplot2}.") (define-public r-effectsize (package (name "r-effectsize") - (version "0.4.1") + (version "0.4.3") (source (origin (method url-fetch) (uri (cran-uri "effectsize" version)) (sha256 (base32 - "1rbl63b1c7z9llznnwvclqrcgdd4hfmc7y66v7raqqf2a4nadqa5")))) + "1hcrnax9wf0nwsb8nv15rxw8yy8w5dak16dw3w5bxi8xnf56lkz2")))) (properties `((upstream-name . "effectsize"))) (build-system r-build-system) (propagated-inputs @@ -9657,13 +9701,13 @@ conversion of indices such as Cohen's d, r, odds, etc.") (define-public r-sjplot (package (name "r-sjplot") - (version "2.8.6") + (version "2.8.7") (source (origin (method url-fetch) (uri (cran-uri "sjPlot" version)) (sha256 - (base32 "1dn9nvvp4jd45kwr4rpp2abf7xdpdmiv41rr3fkdb32a136bzx4b")))) + (base32 "1g4qabg654kwdm09ihp4h3mg64a1d7a7gsn6w56rwsidqqaxilq0")))) (properties `((upstream-name . "sjPlot"))) (build-system r-build-system) (propagated-inputs @@ -9811,17 +9855,96 @@ when building command line applications. They fall back to alternatives on terminals that do not support Unicode.") (license license:expat))) +(define-public r-credentials + (package + (name "r-credentials") + (version "1.3.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "credentials" version)) + (sha256 + (base32 + "1w9zj34xdwz9bszsvhv2cbgq96y5sgxbh7ndn31pgfcpzlkfq6f1")))) + (properties `((upstream-name . "credentials"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'setenv-HOME + (lambda _ + ;; This is necessary because git looks for $HOME/.gitconfig + (setenv "HOME" "/tmp") + #t))))) + (inputs + `(("git" ,git-minimal))) + (propagated-inputs + `(("r-askpass" ,r-askpass) + ("r-curl" ,r-curl) + ("r-jsonlite" ,r-jsonlite) + ("r-openssl" ,r-openssl) + ("r-sys" ,r-sys))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page "https://docs.ropensci.org/credentials/") + (synopsis "Tools for managing SSH and Git credentials") + (description + "This package assists you in setting up and retrieving of HTTPS and SSH +credentials for use with git and other services. For HTTPS remotes the +package interfaces the @command{git-credential} utility which @command{git} +uses to store HTTP usernames and passwords. For SSH remotes this package +provides convenient functions to find or generate appropriate SSH keys. The +package both helps the user to setup a local git installation, and also +provides a back-end for git/ssh client libraries to authenticate with existing +user credentials.") + (license license:expat))) + +(define-public r-gert + (package + (name "r-gert") + (version "1.0.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "gert" version)) + (sha256 + (base32 + "1lq4hgv2727lwcv8vha5af26nslj99rjxjrgflshmmcihawpls1n")))) + (properties `((upstream-name . "gert"))) + (build-system r-build-system) + (inputs + `(("libgit2" ,libgit2) + ("zlib" ,zlib))) + (propagated-inputs + `(("r-askpass" ,r-askpass) + ("r-credentials" ,r-credentials) + ("r-openssl" ,r-openssl) + ("r-rstudioapi" ,r-rstudioapi) + ("r-zip" ,r-zip))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("r-knitr" ,r-knitr))) + (home-page "https://docs.ropensci.org/gert/") + (synopsis "Simple Git client for R") + (description + "This package provides a simple git client for R based on libgit2 with +support for SSH and HTTPS remotes. All functions in gert use basic R data +types (such as vectors and data-frames) for their arguments and return values. +User credentials are shared with command line git through the +@code{git-credential} store and SSH keys stored on disk or ssh-agent.") + (license license:expat))) + (define-public r-usethis (package (name "r-usethis") - (version "1.6.3") + (version "2.0.0") (source (origin (method url-fetch) (uri (cran-uri "usethis" version)) (sha256 (base32 - "09lk04kycvf5x9ggrb6pwc7bx5mzqxwialm2w9vn1a0w0gh2gcfc")))) + "0m4qnnkdiizsdvq33x502zwkn98hw2qcfm45cjj031vaydcjpai2")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -9830,11 +9953,13 @@ terminals that do not support Unicode.") ("r-curl" ,r-curl) ("r-desc" ,r-desc) ("r-fs" ,r-fs) + ("r-gert" ,r-gert) ("r-gh" ,r-gh) - ("r-git2r" ,r-git2r) ("r-glue" ,r-glue) + ("r-jsonlite" ,r-jsonlite) + ("r-lifecycle" ,r-lifecycle) ("r-purrr" ,r-purrr) - ("r-rematch2" ,r-rematch2) + ("r-rappdirs" ,r-rappdirs) ("r-rlang" ,r-rlang) ("r-rprojroot" ,r-rprojroot) ("r-rstudioapi" ,r-rstudioapi) @@ -10002,14 +10127,14 @@ ways.") (define-public r-summarytools (package (name "r-summarytools") - (version "0.9.6") + (version "0.9.8") (source (origin (method url-fetch) (uri (cran-uri "summarytools" version)) (sha256 (base32 - "03pcb2ild1rb9f15yq8b68p9bg10z5wk2x7ahgyzkwdh5f81vbq2")))) + "0n7rad6bkfn9cb99wbfzbwl5qzch48r0gafhddfcqvyh4fbn2k0j")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -10024,6 +10149,8 @@ ways.") ("r-rapportools" ,r-rapportools) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/dcomtois/summarytools") (synopsis "Tools to quickly and neatly summarize data") (description @@ -10152,14 +10279,14 @@ the interfaces between R and C++.") (define-public r-mvabund (package (name "r-mvabund") - (version "4.1.3") + (version "4.1.6") (source (origin (method url-fetch) (uri (cran-uri "mvabund" version)) (sha256 (base32 - "1z58h4dk3mc2hfnfvc7pghk471cbp7ah2s1z2ria5igw4s80962b")))) + "0aisvax9d7bk6aykrcdcn1ji618r520mcrkr1i3jnck1qs31z41f")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -10177,14 +10304,14 @@ analysing multivariate abundance data in community ecology.") (define-public r-afex (package (name "r-afex") - (version "0.28-0") + (version "0.28-1") (source (origin (method url-fetch) (uri (cran-uri "afex" version)) (sha256 (base32 - "0c47bq2llzw2b4avhkxyhmf1m2zjh9jsjiw2kww9n1bhwqsyr4ci")))) + "0blwqr5ni3psav1dcdmhfi4jy3b4scm5njimqfpr1d81zadvgc6g")))) (build-system r-build-system) (propagated-inputs `(("r-car" ,r-car) @@ -10294,14 +10421,14 @@ address a bug.") (define-public r-rcppannoy (package (name "r-rcppannoy") - (version "0.0.17") + (version "0.0.18") (source (origin (method url-fetch) (uri (cran-uri "RcppAnnoy" version)) (sha256 (base32 - "0z4dpvk2hmh817709l70jdl1vvnzn0vb9wlr5m8jza24sn9w14ac")))) + "0n68cf77gz34iq6w6ad87pbqwqam45nxp1gjzns4g6qhf7qdvrz4")))) (properties `((upstream-name . "RcppAnnoy"))) (build-system r-build-system) (propagated-inputs @@ -10410,17 +10537,18 @@ Bioconductor packages.") (define-public r-rgl (package (name "r-rgl") - (version "0.100.54") + (version "0.104.16") (source (origin (method url-fetch) (uri (cran-uri "rgl" version)) (sha256 (base32 - "1mgs2d8igmcdzzymfwbqdrypmaidd4pra5n5gnhsn9pm6pqzidqp")))) + "169a8riiam8445nl7rcwn0x92dlwyzh5xldvap6dcxjyjqmjwbdq")))) (build-system r-build-system) (native-inputs - `(("pkg-config" ,pkg-config))) + `(("pkg-config" ,pkg-config) + ("r-knitr" ,r-knitr))) (inputs `(("freetype" ,freetype) ("libpng" ,libpng) @@ -11017,14 +11145,14 @@ only sparse real matrices in Matrix package format are supported.") (define-public r-speedglm (package (name "r-speedglm") - (version "0.3-2") + (version "0.3-3") (source (origin (method url-fetch) (uri (cran-uri "speedglm" version)) (sha256 (base32 - "1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz")))) + "0f37w4lj8dpcg1sfkd7cv6qpdkanmb97mnd8zih2fxzv8bpd0rfh")))) (build-system r-build-system) (propagated-inputs `(("r-mass" ,r-mass) @@ -11401,14 +11529,14 @@ conditional reporting based on the current \"output level\".") (define-public r-tractor-base (package (name "r-tractor-base") - (version "3.3.2") + (version "3.3.3.1") (source (origin (method url-fetch) (uri (cran-uri "tractor.base" version)) (sha256 (base32 - "0y5gm0y4chl30f5qqq8qiiw4j8g32s4i9xrvyp3cwg902kf2p86i")))) + "0w5jw7pf77npkgig7667yikpbwv4dfk1dcq63qm88l409ga2f95p")))) (properties `((upstream-name . "tractor.base"))) (build-system r-build-system) (propagated-inputs @@ -11758,14 +11886,14 @@ preparing, executing, and processing HTTP requests.") (define-public r-gmp (package (name "r-gmp") - (version "0.6-1") + (version "0.6-2") (source (origin (method url-fetch) (uri (cran-uri "gmp" version)) (sha256 (base32 - "11rl7qmfrpp1974f0vzsi3zjyx147wlb82ydxak2b60khfvhrn90")))) + "03kzbflgpy5sgnzxmhshs5qv7jjmfc113ybkhxys4z8y7xdv9z3b")))) (build-system r-build-system) (arguments '(#:phases @@ -12254,17 +12382,19 @@ This makes it a convenient and fast interface to C/C++ and Fortran code.") (define-public r-spam (package (name "r-spam") - (version "2.5-1") + (version "2.6-0") (source (origin (method url-fetch) (uri (cran-uri "spam" version)) (sha256 - (base32 "0ry0a76cljlmilrzcriiizcidxyhq1i7i9bqhvl1qda81ld8hifi")))) + (base32 "0p5ycvpry955ldrgbbq3syy91wx9425mddpn8r5m9xwlirjxv3v3")))) (build-system r-build-system) (propagated-inputs `(("r-dotcall64" ,r-dotcall64))) - (native-inputs `(("gfortran" ,gfortran))) + (native-inputs + `(("gfortran" ,gfortran) + ("r-knitr" ,r-knitr))) (home-page "https://www.math.uzh.ch/pages/spam/") (synopsis "Sparse matrix algebra") (description @@ -12757,14 +12887,14 @@ them in distributed compute environments.") (define-public r-parallelly (package (name "r-parallelly") - (version "1.21.0") + (version "1.23.0") (source (origin (method url-fetch) (uri (cran-uri "parallelly" version)) (sha256 (base32 - "1hlr81khr7z4x9gprymdh19mdq3nw6wm8d2795sd2pa3ya6phnb0")))) + "025whcz55wj9jd73dalkbxh4l2331mqn758glr6hlf472lwf4v1p")))) (properties `((upstream-name . "parallelly"))) (build-system r-build-system) (home-page "https://github.com/HenrikBengtsson/parallelly") @@ -12785,14 +12915,14 @@ port-forwarding to your local computer.") (define-public r-future (package (name "r-future") - (version "1.20.1") + (version "1.21.0") (source (origin (method url-fetch) (uri (cran-uri "future" version)) (sha256 (base32 - "14k00g8c9zgf77d6q7x2vibvlivzk2rzj7lwn7v7d9nr6prqzlb6")))) + "0bfiy17n5rghxw0702k0vgpjkk13268lniifdlx59flf0q16d7lh")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -12818,14 +12948,14 @@ the local machine to, say, distributed processing on a remote compute cluster.") (define-public r-future-apply (package (name "r-future-apply") - (version "1.6.0") + (version "1.7.0") (source (origin (method url-fetch) (uri (cran-uri "future.apply" version)) (sha256 (base32 - "1zbfycjfvxnrigm6l2fd2zgnw96g0apiw426c73gkv3xv7bdy6ms")))) + "1ns5cf80vyabvyz9qp6kpvkg4jycinn7x6v7x6692fgjapdnmyig")))) (properties `((upstream-name . "future.apply"))) (build-system r-build-system) (propagated-inputs @@ -13131,14 +13261,14 @@ users of rARPACK are advised to switch to the RSpectra package.") (define-public r-compositions (package (name "r-compositions") - (version "2.0-0") + (version "2.0-1") (source (origin (method url-fetch) (uri (cran-uri "compositions" version)) (sha256 (base32 - "0xsx4n699q2r4pk2jrvifi3wi49lih7d1j3j6qgqqd31brg53jqr")))) + "03qslsfx11gshls901zlhw47prd55mf16w4mkmd8x1dgiwq938l4")))) (build-system r-build-system) (propagated-inputs `(("r-bayesm" ,r-bayesm) @@ -13419,17 +13549,19 @@ them (Anscombe-Glynn, D'Agostino, Bonett-Seier).") (define-public r-msir (package (name "r-msir") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (cran-uri "msir" version)) (sha256 (base32 - "0pvc3q162vqq3k39nni732x05zzfz4y9y2zf56d83185ypszv9kb")))) + "1wm83m3cqd6llxb9p2jwim0wb81v84pgdmgcznygzaaq6kbn3n84")))) (build-system r-build-system) (propagated-inputs `(("r-mclust" ,r-mclust))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/msir") (synopsis "Model-based sliced inverse regression") (description @@ -13611,14 +13743,14 @@ graphs.") (define-public r-pbdzmq (package (name "r-pbdzmq") - (version "0.3-3.1") + (version "0.3-4") (source (origin (method url-fetch) (uri (cran-uri "pbdZMQ" version)) (sha256 (base32 - "08qmrzazadkyxlqc8830r0pckaq10l3fgj1f198xy6wwrm2lf0wy")))) + "0adiac53yq305ymhrds1gas4jm0rn1ddv7c7df5ky2cfhpb4ny87")))) (properties `((upstream-name . "pbdZMQ"))) (build-system r-build-system) (inputs @@ -14137,14 +14269,14 @@ barplots or heatmaps.") (define-public r-seqinr (package (name "r-seqinr") - (version "4.2-4") + (version "4.2-5") (source (origin (method url-fetch) (uri (cran-uri "seqinr" version)) (sha256 (base32 - "0pw035h17dmic8m0pb73fbyf6p4jbwggxjk5vpjlybn8dwd0rk93")))) + "1z1jipgrn9nrnxlx7bcf8c2chwpa3kfva0zgyb12xbr3kisn166y")))) (build-system r-build-system) (propagated-inputs `(("r-ade4" ,r-ade4) @@ -14270,14 +14402,14 @@ sampling.") (define-public r-deldir (package (name "r-deldir") - (version "0.2-3") + (version "0.2-9") (source (origin (method url-fetch) (uri (cran-uri "deldir" version)) (sha256 (base32 - "0kin1hsd6dj36kkg7n328mzp21wwn9jm69lvgg2rvbf6bq7q091d")))) + "0jfwff5kk0zraspsvbk26lphl3fnrc6xmhl4690hr0a5k177ildm")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) (home-page "https://cran.r-project.org/web/packages/deldir") @@ -14294,14 +14426,14 @@ tessellation.") (define-public r-sf (package (name "r-sf") - (version "0.9-6") + (version "0.9-7") (source (origin (method url-fetch) (uri (cran-uri "sf" version)) (sha256 (base32 - "01yqlnx9v7lzb6g4ywjlncz67cnkizszarnf2dmd4fi8abhw4zs9")))) + "175fmnnw11fjhfgjv9sn9b0jfjcqbybpgwsvv99d5yddigvw5jja")))) (build-system r-build-system) (inputs `(("gdal" ,gdal) @@ -14907,14 +15039,14 @@ handle missing genotypes at some SNPs.") (define-public r-sampling (package (name "r-sampling") - (version "2.8") + (version "2.9") (source (origin (method url-fetch) (uri (cran-uri "sampling" version)) (sha256 (base32 - "06pj7dan0mknpsblmlnk7am78qrnwgnql5vvx7vmbfvib7rj6s9m")))) + "11xis4vzn2ga8ml9xrgfgqzccvwbnabq35aidzdvpnvciybsanvz")))) (build-system r-build-system) (propagated-inputs `(("r-lpsolve" ,r-lpsolve) @@ -15180,14 +15312,14 @@ yeast.") (define-public r-gridgraphics (package (name "r-gridgraphics") - (version "0.5-0") + (version "0.5-1") (source (origin (method url-fetch) (uri (cran-uri "gridGraphics" version)) (sha256 (base32 - "0rlyc3xk8kfrfzbfd8n4javq3yxqd7lsfmi4q5n6s61srnrl6c1r")))) + "12yswy02j3h5wir7m5jnkhpjmb0sa4snn61vjd68i49qwsa6w219")))) (properties `((upstream-name . "gridGraphics"))) (build-system r-build-system) (home-page "https://github.com/pmur002/gridgraphics") @@ -16075,14 +16207,14 @@ code edited with @code{RStudio IDE}, @code{Emacs} and @code{Vim}.") (define-public r-sctransform (package (name "r-sctransform") - (version "0.3.1") + (version "0.3.2") (source (origin (method url-fetch) (uri (cran-uri "sctransform" version)) (sha256 (base32 - "0b8ni8dzlcikjm2bx5w8yi9vygx0qqxjrmnsy4kf7d1h03n2sxwa")))) + "1p3m6i28nlxh6r609syn88cwlbdpl3dw44dy3gsijk2ibq20mfsx")))) (build-system r-build-system) (propagated-inputs `(("r-future" ,r-future) @@ -16179,14 +16311,14 @@ parallel versions of vectorized R functions of the @code{mc*apply} family.") (define-public r-blme (package (name "r-blme") - (version "1.0-4") + (version "1.0-5") (source (origin (method url-fetch) (uri (cran-uri "blme" version)) (sha256 (base32 - "1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2")))) + "0413j7gwr5yj14jamkizj55q7xii1a0kgazzj0ilqn2ascclz6k7")))) (build-system r-build-system) (propagated-inputs `(("r-lme4" ,r-lme4))) (home-page "https://github.com/vdorie/blme") @@ -16200,14 +16332,14 @@ extends the lme4 package.") (define-public r-batchtools (package (name "r-batchtools") - (version "0.9.14") + (version "0.9.15") (source (origin (method url-fetch) (uri (cran-uri "batchtools" version)) (sha256 (base32 - "1b78r70gm4a0wzjr367hqx2rfphfkbppp14d0l5zs2fvyz166lsx")))) + "0d2xy77hkzhcnyz8zxcv98i80fx6ripjw4rvyx4ww1d0vjjgqf52")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) @@ -16593,20 +16725,19 @@ the current document.") (define-public r-xgboost (package (name "r-xgboost") - (version "1.2.0.1") + (version "1.3.2.1") (source (origin (method url-fetch) (uri (cran-uri "xgboost" version)) (sha256 (base32 - "16hpvv2hwdzcyg90z7c1g5d2hj011qk8mivy4l2nqd2g7rkjwis4")))) + "117q8xqm82589517fi8xicd8724v9c0wnq3qpl84h6nm3aw65x1g")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) ("r-magrittr" ,r-magrittr) - ("r-matrix" ,r-matrix) - ("r-stringi" ,r-stringi))) + ("r-matrix" ,r-matrix))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/dmlc/xgboost") @@ -16652,14 +16783,14 @@ in R, including a translation of the original algorithm into R.") (define-public r-uwot (package (name "r-uwot") - (version "0.1.9") + (version "0.1.10") (source (origin (method url-fetch) (uri (cran-uri "uwot" version)) (sha256 (base32 - "1iqvircvlxyd68n5279a0cwn5rc3pshxs7w1gqrns9c602xd6mhy")))) + "08vxh085wnrxgwy35ksb4cr7ccjvd98pyr2zlgarqryfgc1bdqbf")))) (build-system r-build-system) (propagated-inputs `(("r-dqrng" ,r-dqrng) @@ -16839,14 +16970,14 @@ guaranteeing well-connected communities.\" <arXiv:1810.08473>.") (define-public r-patchwork (package (name "r-patchwork") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "patchwork" version)) (sha256 (base32 - "13vswvcfmadmjz7pw0qdqdr6x85zbza4gljx2nx3a39hldj71yck")))) + "10glgkf58lcykcwda1hj6xdps02m3i247qynk6s2jmwljagps3fg")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -17164,14 +17295,14 @@ in pipelines.") (define-public r-parameters (package (name "r-parameters") - (version "0.10.1") + (version "0.11.0") (source (origin (method url-fetch) (uri (cran-uri "parameters" version)) (sha256 (base32 - "1xvjvsdd0hql209f7v2l1nw7gy8jkj5qp0699p5m2h55a01jl778")))) + "020k3vxnp0vjrlkcxx5vj30vag474hw48zxzw9315whsq4hhhbqc")))) (properties `((upstream-name . "parameters"))) (build-system r-build-system) (propagated-inputs @@ -17193,13 +17324,13 @@ effect size.") (define-public r-rgdal (package (name "r-rgdal") - (version "1.5-18") + (version "1.5-19") (source (origin (method url-fetch) (uri (cran-uri "rgdal" version)) (sha256 - (base32 "1pr267sh0v6cympdg12yny51cmn4r20s5sjq2hqymn4kphcpqijk")))) + (base32 "1cii2azm3zv5l6fn33xzwahp8349z3pb2769vpdxkf7734dxggvg")))) (properties `((upstream-name . "rgdal"))) (build-system r-build-system) (inputs @@ -17811,14 +17942,14 @@ server-side.") (define-public r-sysfonts (package (name "r-sysfonts") - (version "0.8.2") + (version "0.8.3") (source (origin (method url-fetch) (uri (cran-uri "sysfonts" version)) (sha256 (base32 - "1gapsiva0vjd2myxgm1avav6my5x00rmy2hx0qll7dm7v1isznbv")))) + "00kbazxw6zd1kakfshffdj928krca53bw9k78k0zar40mbqxiwd5")))) (properties `((upstream-name . "sysfonts"))) (build-system r-build-system) (inputs @@ -17859,14 +17990,14 @@ package.") (define-public r-showtext (package (name "r-showtext") - (version "0.9-1") + (version "0.9-2") (source (origin (method url-fetch) (uri (cran-uri "showtext" version)) (sha256 (base32 - "1hq346k2lm7rv49hw7srn3ab5gcp6b0r4zc1kgsdmswyh3q1asra")))) + "0y5mw6ffk92r7b22irrfhdmj4hxfl0d1wjxj14hznbapc4qm6f0z")))) (properties `((upstream-name . "showtext"))) (build-system r-build-system) (inputs @@ -18706,14 +18837,14 @@ identify file sets and individual files.") (define-public r-r-devices (package (name "r-r-devices") - (version "2.16.1") + (version "2.17.0") (source (origin (method url-fetch) (uri (cran-uri "R.devices" version)) (sha256 (base32 - "15zlnq3g27whq26fbcy5zfl5hiddm256h4rga4frblg6wqlbkvdd")))) + "1djz6vm1b7sjvx1q319dl47gbnz9kvipaxcz9i0spyp094lv3m62")))) (properties `((upstream-name . "R.devices"))) (build-system r-build-system) (propagated-inputs @@ -19351,14 +19482,14 @@ R.") (define-public r-hdrcde (package (name "r-hdrcde") - (version "3.3") + (version "3.4") (source (origin (method url-fetch) (uri (cran-uri "hdrcde" version)) (sha256 (base32 - "0c2qbw4c3mq1cb068kjs72rxlbibz8svwcrx853jyr8ybs23z7ab")))) + "16qlk44cjvn2s0vzaf915df65ksdx20dbxhy7fpdqins46hccha3")))) (properties `((upstream-name . "hdrcde"))) (build-system r-build-system) (propagated-inputs @@ -19432,14 +19563,14 @@ variable observed over time.") (define-public r-fda (package (name "r-fda") - (version "5.1.7") + (version "5.1.9") (source (origin (method url-fetch) (uri (cran-uri "fda" version)) (sha256 (base32 - "1r8hfi6x1maw5zz8k95wfcr7v69lg4zl3mcj69cvvq2mkg4y3158")))) + "0yjrjsv55bcwqn2yxjgj3hn17wfvjvgngfw9xv3w802i52yz9gf8")))) (properties `((upstream-name . "fda"))) (build-system r-build-system) (propagated-inputs @@ -19539,20 +19670,22 @@ data for different accelerometer brands.") (define-public r-activityindex (package (name "r-activityindex") - (version "0.3.6") + (version "0.3.7") (source (origin (method url-fetch) (uri (cran-uri "ActivityIndex" version)) (sha256 (base32 - "14k6d78s15j7kb7jhixf4msrdjdl28d0r264cbvy41p8dkq7ysvk")))) + "1zj2b6x31a1kxl80rarmkrlm7ack4154mrkbqs3fpi48zpmjbgd5")))) (properties `((upstream-name . "ActivityIndex"))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) ("r-matrixstats" ,r-matrixstats) ("r-r-utils" ,r-r-utils))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://cran.r-project.org/web/packages/ActivityIndex/") (synopsis "Activity Index calculation using raw accelerometry data") (description @@ -19671,14 +19804,14 @@ API; see the package vignette for details.") (define-public r-actuar (package (name "r-actuar") - (version "3.0-0") + (version "3.1-0") (source (origin (method url-fetch) (uri (cran-uri "actuar" version)) (sha256 (base32 - "0dkp1sczldzy7kj70qvh1q59jhsq1brjybmxdz43jnx63y45llpz")))) + "15a8axb2ym46j8vlm7icwnsc950p8m66hp0armha7drk0725y77k")))) (properties `((upstream-name . "actuar"))) (build-system r-build-system) (propagated-inputs `(("r-expint" ,r-expint))) @@ -21176,14 +21309,14 @@ least squares.") (define-public r-semtools (package (name "r-semtools") - (version "0.5-3") + (version "0.5-4") (source (origin (method url-fetch) (uri (cran-uri "semTools" version)) (sha256 (base32 - "0k3w10fnq0l89inhxvnypyrfhlrm921mfn0kwyyfpndvbqizky1d")))) + "15kban4ds2mssxqslm126b89p8biya14c9m68sqk61vzvx5dm2vq")))) (properties `((upstream-name . "semTools"))) (build-system r-build-system) (propagated-inputs @@ -21227,14 +21360,14 @@ perform @dfn{exploratory mediation} (XMed).") (define-public r-stanheaders (package (name "r-stanheaders") - (version "2.21.0-6") + (version "2.21.0-7") (source (origin (method url-fetch) (uri (cran-uri "StanHeaders" version)) (sha256 (base32 - "1wwcrss4y6xbi81cg6ldhm57wz5paflzzp3yxh8b6shf9l2jla50")))) + "0srkyawyiykn3p5lw1z3zf18s4ax4iasv1ci3l1px40f9w36wm17")))) (properties `((upstream-name . "StanHeaders"))) (build-system r-build-system) (inputs `(("pandoc" ,pandoc))) @@ -21912,13 +22045,13 @@ recommendations for developers.") (define-public r-loo (package (name "r-loo") - (version "2.4.0") + (version "2.4.1") (source (origin (method url-fetch) (uri (cran-uri "loo" version)) (sha256 - (base32 "01a15ikfnyxhjhrgvy3ag929rg45dxp3wji1j38r4hg4q1yz4ma9")))) + (base32 "0l2v8zpashqbnck3qx5lp1gqjcfphzky8mxyw5gfk9wk99mzn8dw")))) (properties `((upstream-name . "loo"))) (build-system r-build-system) (inputs @@ -22603,14 +22736,14 @@ is also implemented here.") (define-public r-aws (package (name "r-aws") - (version "2.5") + (version "2.5-1") (source (origin (method url-fetch) (uri (cran-uri "aws" version)) (sha256 (base32 - "1mwg1q7l4a07g5aa9c6kh3fpl9lakk01pbzlk7ixbpy12yfvj9nm")))) + "1fhm87iax6bkvd4vszvjbcqw3b2drs11rjxr7zf2w4sgc72svaz8")))) (properties `((upstream-name . "aws"))) (build-system r-build-system) @@ -22978,19 +23111,26 @@ with posterior predictive checks and leave-one-out cross-validation.") (define-public r-mstate (package (name "r-mstate") - (version "0.2.12") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "mstate" version)) (sha256 (base32 - "0qnhivbibzss8yfsg44cvbf73n4jj4i28rbdysl88g14ig5sabgv")))) + "11i3p7fph8nbnfis1m7rdrq32qryaajv2wrkxk1x6k17zkh4rq6i")))) (properties `((upstream-name . "mstate"))) (build-system r-build-system) (propagated-inputs - `(("r-rcolorbrewer" ,r-rcolorbrewer) - ("r-survival" ,r-survival))) + `(("r-data-table" ,r-data-table) + ("r-lattice" ,r-lattice) + ("r-magrittr" ,r-magrittr) + ("r-rcolorbrewer" ,r-rcolorbrewer) + ("r-rlang" ,r-rlang) + ("r-survival" ,r-survival) + ("r-viridis" ,r-viridis))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://www.lumc.nl/org/bds/research/medische-statistiek/survival-analysis/") (synopsis @@ -23055,14 +23195,14 @@ permuted copies (shadows).") (define-public r-directlabels (package (name "r-directlabels") - (version "2020.6.17") + (version "2021.1.13") (source (origin (method url-fetch) (uri (cran-uri "directlabels" version)) (sha256 (base32 - "1b6v206kizz5rjw03chjvn40a7cqihjpk80h1h79z2x27hp1qi3f")))) + "0415kh9k2qzdwi8zb32fh2icl5wf5335kyj11cyfdmfxji39zv2w")))) (build-system r-build-system) (propagated-inputs `(("r-quadprog" ,r-quadprog))) @@ -23180,17 +23320,53 @@ by providing functionality for preprocessing, predicting, and validating input.") (license license:expat))) +(define-public r-lightgbm + (package + (name "r-lightgbm") + (version "3.1.1") + (source + (origin + (method url-fetch) + (uri (cran-uri "lightgbm" version)) + (sha256 + (base32 + "1pwsh6j9ksahh58b15j5ij56bsc6syy3z4k4a5zhy5n7829rz555")))) + (properties `((upstream-name . "lightgbm"))) + (build-system r-build-system) + (propagated-inputs + `(("r-data-table" ,r-data-table) + ("r-jsonlite" ,r-jsonlite) + ("r-matrix" ,r-matrix) + ("r-r6" ,r-r6))) + (home-page "https://github.com/Microsoft/LightGBM") + (synopsis "Light gradient boosting machine") + (description + "Tree based algorithms can be improved by introducing boosting +frameworks. LightGBM is one such framework, based on Ke, Guolin et +al. (2017). This package offers an R interface to work with it. It is +designed to be distributed and efficient with the following goals: + +@enumerate +@item Faster training speed and higher efficiency; +@item lower memory usage; +@item better accuracy; +@item parallel learning supported; and +@item capable of handling large-scale data. +@end enumerate +") + (license license:expat))) + (define-public r-shapforxgboost (package (name "r-shapforxgboost") - (version "0.0.4") + (version "0.1.0") (source (origin (method url-fetch) (uri (cran-uri "SHAPforxgboost" version)) (sha256 (base32 - "0k6bg27wqnkzv82bcahbapmqhiz6rvnx81m23zbjw58c7lwshgnq")))) + "0jgyss9bawl7sf4dwa75sn7ld3mvrrr0z2074lbkq3f5qb9gwsly")))) (properties `((upstream-name . "SHAPforxgboost"))) (build-system r-build-system) @@ -23201,6 +23377,7 @@ input.") ("r-ggforce" ,r-ggforce) ("r-ggplot2" ,r-ggplot2) ("r-ggpubr" ,r-ggpubr) + ("r-lightgbm" ,r-lightgbm) ("r-rcolorbrewer" ,r-rcolorbrewer) ("r-xgboost" ,r-xgboost))) (home-page "https://github.com/liuyanguu/SHAPforxgboost") @@ -23534,14 +23711,14 @@ diagonals. This package allows you to compute the tensor product of arrays.") (define-public r-spatstat-utils (package (name "r-spatstat-utils") - (version "1.17-0") + (version "1.20-2") (source (origin (method url-fetch) (uri (cran-uri "spatstat.utils" version)) (sha256 (base32 - "08h9kzkkxvlnngxnv5mdylfali5jj4yhgbr8kvf8l7glswz6ik9r")))) + "066f35017wpbz9plwc14gji3ddq4a1h2lx4mcgxajrcrk0zl3hk2")))) (properties `((upstream-name . "spatstat.utils"))) (build-system r-build-system) @@ -23555,14 +23732,14 @@ which may also be useful for other purposes.") (define-public r-spatstat-data (package (name "r-spatstat-data") - (version "1.5-2") + (version "1.7-0") (source (origin (method url-fetch) (uri (cran-uri "spatstat.data" version)) (sha256 (base32 - "17vbf48g1mh8iigzzlaa9j4mw087hib7f1kkbl3c50xjcrr5iw6b")))) + "0by10dx72jjn6rvgrdj4xwh4zg6vxi4cp536aq4b6drb7za95hdv")))) (properties `((upstream-name . "spatstat.data"))) (build-system r-build-system) (propagated-inputs @@ -23645,14 +23822,14 @@ for linear mixed models (AIREML).") (define-public r-cpp11 (package (name "r-cpp11") - (version "0.2.4") + (version "0.2.5") (source (origin (method url-fetch) (uri (cran-uri "cpp11" version)) (sha256 (base32 - "08lrmpfkwh1w290a5ikhs9yn1vn32wbgvbzb4n3zb2indb8s5g69")))) + "081f3b98mcxyilqsxbzzdnj2x6v7xycprrw7r5934163q0397vvg")))) (properties `((upstream-name . "cpp11"))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -24103,14 +24280,14 @@ coerce and verify the types and shapes of values for input checking.") (define-public r-config (package (name "r-config") - (version "0.3") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "config" version)) (sha256 (base32 - "0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs")))) + "0l2zp7v6qaz72dclcbjrlis633zlwp8rsi5azr7iw127iyz7i26l")))) (properties `((upstream-name . "config"))) (build-system r-build-system) (propagated-inputs @@ -24627,14 +24804,14 @@ consistent interface, and the package is built on the @code{stringi} and (define-public r-hunspell (package (name "r-hunspell") - (version "3.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "hunspell" version)) (sha256 (base32 - "0mwqw5p0ph083plm2hr2hqr50bjg2dw862dpsfm4l2fgyy3rryq1")))) + "0ql6y05d4xxpm468rslb0wxdp1x9l3flxzmb5w6pjg617f8vpv8z")))) (properties `((upstream-name . "hunspell"))) (build-system r-build-system) (propagated-inputs @@ -24662,14 +24839,14 @@ vignettes in all common formats.") (define-public r-tidytext (package (name "r-tidytext") - (version "0.2.6") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "tidytext" version)) (sha256 (base32 - "0xmjkab7p13ncfglf3a9hvndf8fh96mmxw3l7hcpbnaq9qkiwk29")))) + "1icbfw4zkbs9sp6vk814mw2zzm0bc0d7af92vhriqxaga0gbwdkx")))) (properties `((upstream-name . "tidytext"))) (build-system r-build-system) (propagated-inputs @@ -24677,12 +24854,14 @@ vignettes in all common formats.") ("r-generics" ,r-generics) ("r-hunspell" ,r-hunspell) ("r-janeaustenr" ,r-janeaustenr) + ("r-lifecycle" ,r-lifecycle) ("r-matrix" ,r-matrix) ("r-purrr" ,r-purrr) ("r-rlang" ,r-rlang) ("r-stringr" ,r-stringr) ("r-tibble" ,r-tibble) - ("r-tokenizers" ,r-tokenizers))) + ("r-tokenizers" ,r-tokenizers) + ("r-vctrs" ,r-vctrs))) (native-inputs `(("r-knitr" ,r-knitr))) (home-page "https://github.com/juliasilge/tidytext") @@ -24695,14 +24874,14 @@ analysis using @code{dplyr}, @code{ggplot2}, and other Tidy tools.") (define-public r-parsnip (package (name "r-parsnip") - (version "0.1.4") + (version "0.1.5") (source (origin (method url-fetch) (uri (cran-uri "parsnip" version)) (sha256 (base32 - "1134840xisvkkrbkh5kvx24vxp7sx06124svy573a9m4h8c492sr")))) + "0c12lyfxqsdprqlcmgy421py38z28h88d68pxb1c4fw14v1c2d06")))) (properties `((upstream-name . "parsnip"))) (build-system r-build-system) (propagated-inputs @@ -24730,14 +24909,14 @@ functions or computational engines (e.g. R, Spark, Stan, etc).") (define-public r-infer (package (name "r-infer") - (version "0.5.3") + (version "0.5.4") (source (origin (method url-fetch) (uri (cran-uri "infer" version)) (sha256 (base32 - "1q0lnxnv8krv4n9z80sh4b442s89rvnbph5bddy34z83bkncwv2g")))) + "0wvvgqjhyv7ql98cjzqad61wbmk7xrqd1ybk894jr5cmza13c8w2")))) (properties `((upstream-name . "infer"))) (build-system r-build-system) (propagated-inputs @@ -24952,14 +25131,14 @@ covariate (usually group indicator) and the scores.") (define-public r-qtl (package (name "r-qtl") - (version "1.46-2") + (version "1.47-9") (source (origin (method url-fetch) (uri (cran-uri "qtl" version)) (sha256 (base32 - "0rbwcnvyy96gq1dsgpxx03pv423qya26h6ws5y0blj3blfdmj83a")))) + "0hffirsvw9j82cdx6l7vhqn3a7ab52claqjlinv3lswl1nsfg93b")))) (build-system r-build-system) (home-page "https://rqtl.org/") (synopsis "R package for analyzing QTL experiments in genetics") @@ -24975,12 +25154,12 @@ genome scans.") (define-public r-qtl2 (package (name "r-qtl2") - (version "0.22-11") + (version "0.24") (source (origin (method url-fetch) (uri (cran-uri "qtl2" version)) (sha256 - (base32 "0dfdzjylqzc92dcszawc8cyinxccjm3p36v9vcq9ma818pqcanmr")))) + (base32 "1558khh0zkwm0rdk87krv9836krvwv5h7ymlz9bsrgcvypyr9186")))) (build-system r-build-system) (propagated-inputs `(("r-data-table" ,r-data-table) @@ -25046,16 +25225,39 @@ alignment using warping functions, handling of replicated measurements as well as allowing spectra with different resolutions.") (license license:gpl3+))) +(define-public r-scattermore + (package + (name "r-scattermore") + (version "0.7") + (source + (origin + (method url-fetch) + (uri (cran-uri "scattermore" version)) + (sha256 + (base32 + "18nzlprmphkvjg946h10h2qq0wbkmv2526p8di6k2xl4gccq0qpk")))) + (properties `((upstream-name . "scattermore"))) + (build-system r-build-system) + (propagated-inputs + `(("r-ggplot2" ,r-ggplot2) + ("r-scales" ,r-scales))) + (home-page "https://github.com/exaexa/scattermore") + (synopsis "Scatterplots with more points") + (description + "This package provides C-based tools for converting large scatterplot +data to rasters. It speeds up plotting of data with millions of points.") + (license license:gpl3+))) + (define-public r-seurat (package (name "r-seurat") - (version "3.2.2") + (version "3.2.3") (source (origin (method url-fetch) (uri (cran-uri "Seurat" version)) (sha256 (base32 - "048vnj0c3mrwhr6yq3jqhgnkg68w99nj1ccsmgnd8rl694w26spj")))) + "11rzc7h2ad8z8k5r1sbz4d7y4rl3080qp2hh7vibwmipbkvlial3")))) (properties `((upstream-name . "Seurat"))) (build-system r-build-system) (propagated-inputs @@ -25095,6 +25297,7 @@ as allowing spectra with different resolutions.") ("r-rsvd" ,r-rsvd) ("r-rtsne" ,r-rtsne) ("r-scales" ,r-scales) + ("r-scattermore" ,r-scattermore) ("r-sctransform" ,r-sctransform) ("r-shiny" ,r-shiny) ("r-spatstat" ,r-spatstat) @@ -25200,18 +25403,20 @@ absolute GSEA.") (define-public r-calculus (package (name "r-calculus") - (version "0.2.1") + (version "0.3.0") (source (origin (method url-fetch) (uri (cran-uri "calculus" version)) (sha256 (base32 - "0hs7hzjl6xjza20v9zx9a1piywxa6w3h2rskr52d1dcbc0vwhinp")))) + "1wa5ap89cfcp0ancj9ivx5s2y0wqr2vmp9y115g7f6g772jwhscj")))) (properties `((upstream-name . "calculus"))) (build-system r-build-system) (propagated-inputs `(("r-rcpp" ,r-rcpp))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/eguidotti/calculus") (synopsis "High dimensional numerical and symbolic calculus") (description @@ -25368,16 +25573,18 @@ Services (AWS) Simple Storage Service (S3) REST API.") (define-public r-lgr (package (name "r-lgr") - (version "0.4.1") + (version "0.4.2") (source (origin (method url-fetch) (uri (cran-uri "lgr" version)) (sha256 (base32 - "196553hmni1ha9y6494f4g3ds0lwcl81v7k4r8wwap4a6acdrgd9")))) + "0k4kacjk7swm3gmdpha1rg44xb29vzvhvx48jhpb78glj5c9phyr")))) (build-system r-build-system) (propagated-inputs `(("r-r6" ,r-r6))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://s-fleck.github.io/lgr/") (synopsis "Fully featured logging framework") (description "This package offers a flexible, feature-rich yet @@ -25390,13 +25597,13 @@ well as email and push notifications.") (define-public r-mlr3measures (package (name "r-mlr3measures") - (version "0.3.0") + (version "0.3.1") (source (origin (method url-fetch) (uri (cran-uri "mlr3measures" version)) (sha256 (base32 - "106lfaxphz0kh96ddq14hic7wvxjqp871zdp9kkkfk1kwfg35abw")))) + "18jk4kdj9771r16smz7xhmmiilcdg1qlavln5hrpvkx780zh3hj6")))) (build-system r-build-system) (propagated-inputs `(("r-checkmate" ,r-checkmate) @@ -25413,13 +25620,13 @@ are.") (define-public r-mlr3misc (package (name "r-mlr3misc") - (version "0.6.0") + (version "0.7.0") (source (origin (method url-fetch) (uri (cran-uri "mlr3misc" version)) (sha256 (base32 - "1q63i2059bf7cf61kwm0dqnk5vd60i0j4flziswwdk07fjxqh8xr")))) + "19k3l2d6wnqvdng0m7p54rrlvwl5457lcy7bg82m2bbpqxi8qch3")))) (build-system r-build-system) (propagated-inputs `(("r-backports" ,r-backports) diff --git a/gnu/packages/crates-graphics.scm b/gnu/packages/crates-graphics.scm index 02bf7b27a4..ca1fd9b3a7 100644 --- a/gnu/packages/crates-graphics.scm +++ b/gnu/packages/crates-graphics.scm @@ -8,7 +8,7 @@ ;;; Copyright © 2020 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Leo Famulari <leo@famulari.name> -;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Antoine Côté <antoine.cote@posteo.net> ;;; ;;; This file is part of GNU Guix. @@ -62,7 +62,7 @@ ("rust-line-drawing" ,rust-line-drawing-0.7) ("rust-rusttype" ,rust-rusttype-0.7) ("rust-walkdir" ,rust-walkdir-2) - ("rust-xdg" ,rust-xdg-2.2) + ("rust-xdg" ,rust-xdg-2) ("rust-xml-rs" ,rust-xml-rs-0.8)) #:cargo-development-inputs (("rust-smithay-client-toolkit" ,rust-smithay-client-toolkit-0.4)))) diff --git a/gnu/packages/crates-io.scm b/gnu/packages/crates-io.scm index 38d6fe806a..36f0b98112 100644 --- a/gnu/packages/crates-io.scm +++ b/gnu/packages/crates-io.scm @@ -993,10 +993,10 @@ block ciphers using AES-NI.") ("rust-lazy-static" ,rust-lazy-static-1) ("rust-libc" ,rust-libc-0.2) ("rust-rustc-version" ,rust-rustc-version-0.2) - ("rust-xdg" ,rust-xdg-2.2)) + ("rust-xdg" ,rust-xdg-2)) #:cargo-development-inputs (("rust-rustc-version" ,rust-rustc-version-0.2) - ("rust-xdg" ,rust-xdg-2.2)))) + ("rust-xdg" ,rust-xdg-2)))) (home-page "https://github.com/rust-fuzz/afl.rs") (synopsis "Fuzzing Rust code with american-fuzzy-lop") @@ -1023,11 +1023,11 @@ block ciphers using AES-NI.") #:cargo-inputs (("rust-rustc-version" ,rust-rustc-version-0.2) ("rust-cc" ,rust-cc-1) - ("rust-xdg" ,rust-xdg-2.2) + ("rust-xdg" ,rust-xdg-2) ("rust-clap" ,rust-clap-2)) #:cargo-development-inputs (("rust-rustc-version" ,rust-rustc-version-0.2) - ("rust-xdg" ,rust-xdg-2.2)))))) + ("rust-xdg" ,rust-xdg-2)))))) (define-public rust-afl-0.4 (package @@ -1103,25 +1103,23 @@ using AES-NI for high performance.") (define-public rust-aho-corasick-0.7 (package (name "rust-aho-corasick") - (version "0.7.13") + (version "0.7.15") (source (origin (method url-fetch) (uri (crate-uri "aho-corasick" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "11hfmqf90rdvjdpk0x1lixw1s9n08y3fxfy9zqsk0k2wpbc68c84")))) + (base32 "1rb8gzhljl8r87dpf2n5pnqnkl694casgns4ma0sqzd4zazzw13l")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs (("rust-memchr" ,rust-memchr-2)) + `(#:cargo-inputs + (("rust-memchr" ,rust-memchr-2)) #:cargo-development-inputs (("rust-doc-comment" ,rust-doc-comment-0.3)))) (home-page "https://github.com/BurntSushi/aho-corasick") (synopsis "Fast multiple substring searching") - (description - "Fast multiple substring searching.") + (description "This package provides a fast multiple substring searching.") (license (list license:unlicense license:expat)))) (define-public rust-aho-corasick-0.6 @@ -1415,6 +1413,35 @@ escape codes.") @code{std::error::Error}.") (license (list license:expat license:asl2.0)))) +(define-public rust-app-dirs2-2 + (package + (name "rust-app-dirs2") + (version "2.3.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "app_dirs2" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "04v2q3jkqr32mwqs4niqfyhbkvvgrcsw0dajwqaz83nc5hs1igsm")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-jni" ,rust-jni-0.18) + ("rust-ndk-glue" ,rust-ndk-glue-0.2) + ("rust-winapi" ,rust-winapi-0.3) + ("rust-xdg" ,rust-xdg-2)) + #:cargo-development-inputs + (("rust-lazy-static" ,rust-lazy-static-1) + ("rust-tempfile" ,rust-tempfile-3) + ("rust-test-case" ,rust-test-case-1)))) + (home-page "https://lib.rs/app_dirs2") + (synopsis "Put app's data in the right place on every platform") + (description + "This package helps you to put your app's data in the right place +on every platform.") + (license license:expat))) + (define-public rust-approx-0.3 (package (name "rust-approx") @@ -2491,15 +2518,14 @@ crate.") (define-public rust-async-trait-0.1 (package (name "rust-async-trait") - (version "0.1.40") + (version "0.1.42") (source (origin (method url-fetch) (uri (crate-uri "async-trait" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "10x7jcg8xqvkmqyz11117aw959p4af5gq1cpf022b9f0hl6j6z38")))) + (base32 "0gd13pqgw5m6l4bqwjkickq13c4v0jxzxs5i4dwmldrlgvklafld")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -3366,12 +3392,43 @@ bindings to C and C++ libraries.") ("rust-quote" ,rust-quote-0.6) ("rust-regex" ,rust-regex-1) ("rust-shlex" ,rust-shlex-0.1) - ("rust-which" ,rust-which-2.0)) + ("rust-which" ,rust-which-2)) #:cargo-development-inputs (("rust-clap" ,rust-clap-2) ("rust-diff" ,rust-diff-0.1) ("rust-shlex" ,rust-shlex-0.1)))))) +(define-public rust-bindgen-0.47 + (package + (inherit rust-bindgen-0.50) + (name "rust-bindgen") + (version "0.47.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "bindgen" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0b9fyq3h4lz5xfy6gv5h8v6j3hzyqcarlylvw9zc715pas1pz09a")))) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bitflags" ,rust-bitflags-1) + ("rust-cexpr" ,rust-cexpr-0.3) + ("rust-cfg-if" ,rust-cfg-if-0.1) + ("rust-clang-sys" ,rust-clang-sys-0.26) + ("rust-clap" ,rust-clap-2) + ("rust-env-logger" ,rust-env-logger-0.6) + ("rust-hashbrown" ,rust-hashbrown-0.1) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-log" ,rust-log-0.4) + ("rust-peeking-take-while" ,rust-peeking-take-while-0.1) + ("rust-proc-macro2" ,rust-proc-macro2-0.4) + ("rust-quote" ,rust-quote-0.6) + ("rust-regex" ,rust-regex-1) + ("rust-shlex" ,rust-shlex-0.1) + ("rust-which" ,rust-which-2)))))) + (define-public rust-bindgen-0.46 (package (inherit rust-bindgen-0.50) @@ -3401,7 +3458,7 @@ bindings to C and C++ libraries.") ("rust-proc-macro2" ,rust-proc-macro2-0.4) ("rust-quote" ,rust-quote-0.6) ("rust-regex" ,rust-regex-1) - ("rust-which" ,rust-which-2.0)) + ("rust-which" ,rust-which-2)) #:cargo-development-inputs (("rust-clap" ,rust-clap-2) ("rust-diff" ,rust-diff-0.1) @@ -3470,7 +3527,7 @@ bindings to C and C++ libraries.") ("rust-quote" ,rust-quote-0.6) ("rust-regex" ,rust-regex-1) ("rust-shlex" ,rust-shlex-0.1) - ("rust-which" ,rust-which-2.0)) + ("rust-which" ,rust-which-2)) #:cargo-development-inputs (("rust-clap" ,rust-clap-2) ("rust-diff" ,rust-diff-0.1) @@ -4662,28 +4719,23 @@ in a byte slice, fast.") (define-public rust-byteorder-1 (package (name "rust-byteorder") - (version "1.3.4") + (version "1.4.2") (source (origin (method url-fetch) (uri (crate-uri "byteorder" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "1pkjfhgjnq898g1d38ygcfi0msg3m6756cwv0sgysj1d26p8mi08")))) + (base32 "0srh0h0594jmsnbvm7n0g8xabhla8lwb3gn8s0fzd7d1snix2i5f")))) (build-system cargo-build-system) (arguments `(#:cargo-development-inputs - (("rust-doc-comment" ,rust-doc-comment-0.3) - ("rust-quickcheck" ,rust-quickcheck-0.8) - ("rust-rand" ,rust-rand-0.6)))) - (home-page - "https://github.com/BurntSushi/byteorder") - (synopsis - "Reading/writing numbers in big-endian and little-endian") + (("rust-quickcheck" ,rust-quickcheck-0.9) + ("rust-rand" ,rust-rand-0.7)))) + (home-page "https://github.com/BurntSushi/byteorder") + (synopsis "Reading/writing numbers in big-endian and little-endian") (description - "Library for reading/writing numbers in big-endian and + "This library is used for reading or writing numbers in big-endian and little-endian.") (license (list license:expat license:unlicense)))) @@ -5498,6 +5550,31 @@ chain, the first matching branch is the item that gets emitted.") (description "Date and time library for Rust.") (license (list license:expat license:asl2.0)))) +(define-public rust-chrono-tz-0.5 + (package + (name "rust-chrono-tz") + (version "0.5.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "chrono-tz" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "085i4940kn0fn4gkl3xi1kv3vp2frhfig1vla1i461pcbwas6m15")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-chrono" ,rust-chrono-0.4) + ("rust-parse-zoneinfo" ,rust-parse-zoneinfo-0.3) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/chronotope/chrono-tz") + (synopsis "TimeZone implementations for rust-chrono from the IANA database") + (description + "Chrono-TZ is a library that provides implementors of the +TimeZone trait for @code{rust-chrono}.") + (license (list license:expat license:asl2.0)))) + (define-public rust-ci-info-0.3 (package (name "rust-ci-info") @@ -6062,8 +6139,43 @@ programming languages.") (sha256 (base32 "0fildacm47g86acmx44yvxx6cka8fdym5qkgfm8x8gh2hsrghc7r")))))) +(define-public rust-combine-4 + (package + (name "rust-combine") + (version "4.5.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "combine" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0zkvqp21fbhznf7sjssdiw3zgx3x3q8w10c9mmjdzkf0wjsnjhyc")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bytes" ,rust-bytes-0.5) + ("rust-bytes" ,rust-bytes-1) + ("rust-futures-io" ,rust-futures-io-0.3) + ("rust-futures-util" ,rust-futures-util-0.3) + ("rust-memchr" ,rust-memchr-2) + ("rust-pin-project-lite" ,rust-pin-project-lite-0.2) + ("rust-regex" ,rust-regex-1) + ("rust-tokio" ,rust-tokio-1) + ("rust-tokio" ,rust-tokio-0.2) + ("rust-tokio" ,rust-tokio-0.3)))) + (home-page "https://github.com/Marwes/combine") + (synopsis "Parser combinators on arbitrary streams with zero-copy support") + (description + "This package is an implementation of parser combinators for Rust, +inspired by the Haskell library Parsec. As in Parsec the parsers are LL(1) by +default but they can opt-in to arbitrary lookahead using the attempt +combinator.") + (license license:expat))) + (define-public rust-combine-3 (package + (inherit rust-combine-4) (name "rust-combine") (version "3.8.1") (source @@ -6073,7 +6185,6 @@ programming languages.") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 "1006sbl3ybiky3d5q28p0lyph37hk7sipls1rkhikv11lfxacgfs")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-ascii" ,rust-ascii-0.9) @@ -6088,15 +6199,7 @@ programming languages.") ("rust-bytes" ,rust-bytes-0.4) ("rust-futures" ,rust-futures-0.1) ("rust-partial-io" ,rust-partial-io-0.3) - ("rust-tokio-codec" ,rust-tokio-codec-0.1)))) - (home-page "https://github.com/Marwes/combine") - (synopsis "Parser combinators on arbitrary streams with zero-copy support") - (description - "This package is an implementation of parser combinators for Rust, -inspired by the Haskell library Parsec. As in Parsec the parsers are LL(1) by -default but they can opt-in to arbitrary lookahead using the attempt -combinator.") - (license license:expat))) + ("rust-tokio-codec" ,rust-tokio-codec-0.1)))))) (define-public rust-combine-regex-1-1 (package @@ -7270,8 +7373,34 @@ criterion.") (description "Tools for concurrent programming.") (license (list license:expat license:asl2.0)))) +(define-public rust-crossbeam-channel-0.5 + (package + (name "rust-crossbeam-channel") + (version "0.5.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "crossbeam-channel" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0xfplw54pskl3kyf2q6kw8y2phnq6wn8pqxx003n8qfkz3hnx8nw")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-cfg-if" ,rust-cfg-if-1) + ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8)))) + (home-page + "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-channel") + (synopsis "Multi-producer multi-consumer channels for message passing") + (description + "This package provides multi-producer multi-consumer channels for +message passing.") + (license (list license:expat license:asl2.0)))) + (define-public rust-crossbeam-channel-0.4 (package + (inherit rust-crossbeam-channel-0.5) (name "rust-crossbeam-channel") (version "0.4.2") (source @@ -7283,7 +7412,6 @@ criterion.") (sha256 (base32 "0qd05n5bcwafkmbzq1lspwrfi29xnzlw46qarg1sl0lwj68qdvfc")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-crossbeam-utils" ,rust-crossbeam-utils-0.7) @@ -7291,16 +7419,7 @@ criterion.") #:cargo-development-inputs (("rust-num-cpus" ,rust-num-cpus-1) ("rust-rand" ,rust-rand-0.6) - ("rust-signal-hook" ,rust-signal-hook-0.1)))) - (home-page - "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-channel") - (synopsis - "Multi-producer multi-consumer channels for message passing") - (description - "Multi-producer multi-consumer channels for message passing.") - (license (list license:expat - license:asl2.0 - license:bsd-2)))) + ("rust-signal-hook" ,rust-signal-hook-0.1)))))) (define-public rust-crossbeam-channel-0.3 (package @@ -7324,8 +7443,33 @@ criterion.") ("rust-rand" ,rust-rand-0.6) ("rust-signal-hook" ,rust-signal-hook-0.1)))))) +(define-public rust-crossbeam-deque-0.8 + (package + (name "rust-crossbeam-deque") + (version "0.8.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "crossbeam-deque" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1ad995vzq74k7jd1pgn9zxbacyzj9ii6l0svhlb2dxzy8vxnxbwl")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-cfg-if" ,rust-cfg-if-1) + ("rust-crossbeam-epoch" ,rust-crossbeam-epoch-0.9) + ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8)))) + (home-page + "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-deque") + (synopsis "Concurrent work-stealing deque") + (description "This package provides a concurrent work-stealing deque.") + (license (list license:expat license:asl2.0)))) + (define-public rust-crossbeam-deque-0.7 (package + (inherit rust-crossbeam-deque-0.8) (name "rust-crossbeam-deque") (version "0.7.3") (source @@ -7337,19 +7481,13 @@ criterion.") (sha256 (base32 "11c2c0x5grdba3ah3g94yn6b8s47xi8qwm85h8hq5vmf9nbsy0lz")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-crossbeam-epoch" ,rust-crossbeam-epoch-0.8) ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.7) ("rust-maybe-uninit" ,rust-maybe-uninit-2.0)) #:cargo-development-inputs - (("rust-rand" ,rust-rand-0.6)))) - (home-page - "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-deque") - (synopsis "Concurrent work-stealing deque") - (description "Concurrent work-stealing deque.") - (license (list license:expat license:asl2.0)))) + (("rust-rand" ,rust-rand-0.6)))))) (define-public rust-crossbeam-deque-0.6 (package @@ -7372,8 +7510,36 @@ criterion.") #:cargo-development-inputs (("rust-rand" ,rust-rand-0.6)))))) +(define-public rust-crossbeam-epoch-0.9 + (package + (name "rust-crossbeam-epoch") + (version "0.9.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "crossbeam-epoch" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "17anyfg5azjpmcfidq6wn4phj9h0a0zqcxksi33w44akz4wsgam1")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-cfg-if" ,rust-cfg-if-1) + ("rust-const-fn" ,rust-const-fn-0.4) + ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-memoffset" ,rust-memoffset-0.6) + ("rust-scopeguard" ,rust-scopeguard-1)))) + (home-page + "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-epoch") + (synopsis "Epoch-based garbage collection") + (description "This package provides an Epoch-based garbage collection.") + (license (list license:expat license:asl2.0)))) + (define-public rust-crossbeam-epoch-0.8 (package + (inherit rust-crossbeam-epoch-0.9) (name "rust-crossbeam-epoch") (version "0.8.2") (source @@ -7385,7 +7551,6 @@ criterion.") (sha256 (base32 "1knsf0zz7rgzxn0nwz5gajjcrivxpw3zrdcp946gdhdgr9sd53h5")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-autocfg" ,rust-autocfg-1) @@ -7396,12 +7561,7 @@ criterion.") ("rust-memoffset" ,rust-memoffset-0.5) ("rust-scopeguard" ,rust-scopeguard-1)) #:cargo-development-inputs - (("rust-rand" ,rust-rand-0.6)))) - (home-page - "https://github.com/crossbeam-rs/crossbeam/tree/master/crossbeam-epoch") - (synopsis "Epoch-based garbage collection") - (description "Epoch-based garbage collection.") - (license (list license:expat license:asl2.0)))) + (("rust-rand" ,rust-rand-0.6)))))) (define-public rust-crossbeam-epoch-0.7 (package @@ -7631,7 +7791,7 @@ Code} (MAC) algorithms.") (string-append name "-" version ".tar.gz")) (sha256 (base32 - "1rbrq6qy9dl0pj4ym2zy33miaaa8vpzdss60p9bdb58xy46l0d24")))) + "1axfs4zmy74rn9666p92j7nmcv11zdp2d51yrppc2dv26cqa715m")))) (arguments `(#:cargo-inputs (("rust-blobby" ,rust-blobby-0.1) @@ -8458,8 +8618,35 @@ reading attributes into structs when implementing custom derives.") reading attributes into structs when implementing custom derives.") (license license:expat))) +(define-public rust-dashmap-4 + (package + (name "rust-dashmap") + (version "4.0.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "dashmap" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1773x18k5m2zw1iyibs8l3wl1p1aijdbrc0w844xys06inr46yp7")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-cfg-if" ,rust-cfg-if-1) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rayon" ,rust-rayon-1) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://github.com/xacrimon/dashmap") + (synopsis "Blazing fast concurrent HashMap for Rust.") + (description "This package implements a blazing fast concurrent HashMap +for Rust.") + (license license:expat))) + (define-public rust-dashmap-3 (package + (inherit rust-dashmap-4) (name "rust-dashmap") (version "3.11.10") (source @@ -8480,7 +8667,6 @@ reading attributes into structs when implementing custom derives.") "#![feature(inner_deref)]" "\n" all))) #t)))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-ahash" ,rust-ahash-0.3) @@ -8491,12 +8677,7 @@ reading attributes into structs when implementing custom derives.") (add-after 'unpack 'enable-unstable-features (lambda _ (setenv "RUSTC_BOOTSTRAP" "1") - #t))))) - (home-page "https://github.com/xacrimon/dashmap") - (synopsis "Blazing fast concurrent HashMap for Rust") - (description "This package implements a blazing fast concurrent HashMap -for Rust.") - (license license:expat))) + #t))))))) (define-public rust-data-encoding-2 (package @@ -9004,6 +9185,26 @@ traits for both structs and enums.") structs and enums.") (license license:expat))) +(define-public rust-deunicode-0.4 + (package + (name "rust-deunicode") + (version "0.4.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "deunicode" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "146nc3wlwz2j9awwf7zf76qvjcahnls0mlv9jm6clcvr9dlph245")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://lib.rs/crates/deunicode") + (synopsis "Convert Unicode strings to pure ASCII") + (description + "This package converts Unicode strings to pure ASCII by +intelligently transliterating them. It supports Emoji and Chinese.") + (license license:bsd-3))) + (define-public rust-dialoguer-0.6 (package (name "rust-dialoguer") @@ -9586,7 +9787,7 @@ from macros.") (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-which" ,rust-which-2.0)))) + (("rust-which" ,rust-which-2)))) (home-page "https://github.com/assert-rs/docmatic") (synopsis "Test Rust examples in your documentation") (description "Test Rust examples in your documentation.") @@ -13771,15 +13972,14 @@ path simultaneously, and returning all of the globs that matched.") (define-public rust-globwalk-0.8 (package (name "rust-globwalk") - (version "0.8.0") + (version "0.8.1") (source (origin (method url-fetch) (uri (crate-uri "globwalk" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0ihld70ngnri1qd8sd61099yfzcl6iqn17rfa102q1bl6ck710hp")))) + (base32 "1k6xwkydr7igvwjn3xkwjywk4213lcs53f576ilqz1h84jaazqwk")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -13978,7 +14178,7 @@ loading crate.") ("rust-lazy-static" ,rust-lazy-static-1) ("rust-log" ,rust-log-0.4) ("rust-regex" ,rust-regex-1) - ("rust-same-file" ,rust-same-file-1.0) + ("rust-same-file" ,rust-same-file-1) ("rust-termcolor" ,rust-termcolor-1) ("rust-winapi-util" ,rust-winapi-util-0.1)))) (home-page @@ -15607,36 +15807,34 @@ let} expressions.") (define-public rust-ignore-0.4 (package (name "rust-ignore") - (version "0.4.16") + (version "0.4.17") (source (origin (method url-fetch) (uri (crate-uri "ignore" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0wpcv4qgfzcyzydhlqa2qr56j72fj1a66s11xzdji59898mbzp12")))) + (base32 "1347mxd0cwiidcl0qvixl7za524x5ds0izv8vjh2df0bqr2zp1xj")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-crossbeam-utils" ,rust-crossbeam-utils-0.7) + (("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8) ("rust-globset" ,rust-globset-0.4) ("rust-lazy-static" ,rust-lazy-static-1) ("rust-log" ,rust-log-0.4) ("rust-memchr" ,rust-memchr-2) ("rust-regex" ,rust-regex-1) - ("rust-same-file" ,rust-same-file-1.0) + ("rust-same-file" ,rust-same-file-1) ("rust-thread-local" ,rust-thread-local-1) ("rust-walkdir" ,rust-walkdir-2) ("rust-winapi-util" ,rust-winapi-util-0.1)) #:cargo-development-inputs - (("rust-crossbeam-channel" ,rust-crossbeam-channel-0.4)))) - (home-page "https://github.com/BurntSushi/ripgrep/tree/master/ignore") - (synopsis "Efficiently match ignore files such as .gitignore") + (("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5)))) + (home-page "https://github.com/BurntSushi/ripgrep/tree/master/crates/ignore") + (synopsis "Efficiently match ignore files such as @file{.gitignore}") (description "This package provides a fast library for efficiently matching -ignore files such as .gitignore against file paths.") +ignore files such as @file{.gitignore} against file paths.") (license (list license:unlicense license:expat)))) (define-public rust-indexmap-1 @@ -15710,6 +15908,33 @@ or numerical index. A corresponding hash set type is also provided.") Rust.") (license license:expat))) +(define-public rust-indoc-1 + (package + (name "rust-indoc") + (version "1.0.3") + (source + (origin + (method url-fetch) + (uri (crate-uri "indoc" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0diih20xsxjb159nr0dq6jxnyhq7gg10dlsnh2siikphmvm5m9z5")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #true + #:cargo-inputs + (("rust-unindent" ,rust-unindent-0.1)) + #:cargo-development-inputs + (("rust-rustversion" ,rust-rustversion-1) + ("rust-trybuild" ,rust-trybuild-1)))) + (home-page "https://github.com/dtolnay/indoc") + (synopsis "Indented document literals for Rust") + (description + "This crate provides a procedural macro for indented string literals. +The @code{indoc!()} macro takes a multiline string literal and un-indents it +at compile time so the leftmost non-space character is in the first column.") + (license (list license:expat license:asl2.0)))) + (define-public rust-infer-0.2 (package (name "rust-infer") @@ -16639,25 +16864,25 @@ primitives to an @code{io::Write}.") (native-inputs `(("jemalloc" ,jemalloc))))) -(define-public rust-jni-0.14 +(define-public rust-jni-0.18 (package (name "rust-jni") - (version "0.14.0") + (version "0.18.0") (source (origin (method url-fetch) (uri (crate-uri "jni" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "00jl4jzzbbcf1nyziras5drp501xsk89g0132pwg194ilh6k308r")))) + (base32 "1brglk3kfia9wkr6rkm6p297b8qk6rv3k8rf6jjiqc74l49735i4")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-cesu8" ,rust-cesu8-1) - ("rust-combine" ,rust-combine-3) - ("rust-error-chain" ,rust-error-chain-0.12) + ("rust-combine" ,rust-combine-4) ("rust-jni-sys" ,rust-jni-sys-0.3) ("rust-log" ,rust-log-0.4) + ("rust-thiserror" ,rust-thiserror-1) ("rust-walkdir" ,rust-walkdir-2)) #:cargo-development-inputs (("rust-lazy-static" ,rust-lazy-static-1)))) @@ -16670,6 +16895,29 @@ code from Rust, embed JVM in Rust applications and use any Java libraries.") (license (list license:expat license:asl2.0)))) +(define-public rust-jni-0.14 + (package + (inherit rust-jni-0.18) + (name "rust-jni") + (version "0.14.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "jni" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "00jl4jzzbbcf1nyziras5drp501xsk89g0132pwg194ilh6k308r")))) + (arguments + `(#:cargo-inputs + (("rust-cesu8" ,rust-cesu8-1) + ("rust-combine" ,rust-combine-3) + ("rust-error-chain" ,rust-error-chain-0.12) + ("rust-jni-sys" ,rust-jni-sys-0.3) + ("rust-log" ,rust-log-0.4) + ("rust-walkdir" ,rust-walkdir-2)) + #:cargo-development-inputs + (("rust-lazy-static" ,rust-lazy-static-1)))))) + (define-public rust-jni-glue-0.0 (package (name "rust-jni-glue") @@ -16791,6 +17039,73 @@ friction with idiomatic Rust structs to ease interopability.") (license (list license:asl2.0 license:expat)))) +(define-public rust-juniper-codegen-0.14 + (package + (name "rust-juniper-codegen") + (version "0.14.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "juniper_codegen" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "06ym8568k9p75kvnfc4ywqbkzaa4ib6gngx9vpbsjwg9v0sg42nl")))) + (build-system cargo-build-system) + (arguments + `(#:tests? #false ;FIXME: fail due to unresolved import + #:cargo-inputs + (("rust-proc-macro2" ,rust-proc-macro2-1) + ("rust-quote" ,rust-quote-1) + ("rust-syn" ,rust-syn-1)) + #:cargo-development-inputs + (("rust-juniper" ,rust-juniper-0.14)))) + (home-page "https://github.com/graphql-rust/juniper") + (synopsis "Internal custom derive trait for Juniper GraphQL") + (description + "This package provides an internal custom derive trait for Juniper +GraphQL.") + (license license:bsd-2))) + +(define-public rust-juniper-0.14 + (package + (name "rust-juniper") + (version "0.14.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "juniper" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0s56rb31yddhvjynl5bk8jihcdln8h5yfsx63kfxdhzvw98vlqpn")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-chrono" ,rust-chrono-0.4) + ("rust-fnv" ,rust-fnv-1) + ("rust-indexmap" ,rust-indexmap-1) + ("rust-juniper-codegen" ,rust-juniper-codegen-0.14) + ("rust-serde" ,rust-serde-1) + ("rust-serde-derive" ,rust-serde-derive-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-url" ,rust-url-2) + ("rust-uuid" ,rust-uuid-0.7)) + #:cargo-development-inputs + (("rust-bencher" ,rust-bencher-0.1) + ("rust-serde-json" ,rust-serde-json-1)))) + (home-page "https://github.com/graphql-rust/juniper") + (synopsis "GraphQL server library for Rust") + (description + "Juniper makes it possible to write GraphQL servers in Rust that are +type-safe and fast. It also tries to make declaring and resolving GraphQL +schemas convenient. + +Juniper does not include a web server. Instead it provides building blocks to +make integration with existing servers straightforward. It optionally +provides a pre-built integration for the Actix, Hyper, Iron, Rocket, and Warp +frameworks, including embedded Graphiql and GraphQL Playground for easy +debugging.") + (license license:bsd-2))) + (define-public rust-keccak-0.1 (package (name "rust-keccak") @@ -18317,6 +18632,30 @@ by inspecting the system for user preference.") `(#:cargo-inputs (("rust-log" ,rust-log-0.4)))))) +(define-public rust-logtest-2 + (package + (name "rust-logtest") + (version "2.0.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "logtest" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "09ihwkq6z7xm6wdwxmc9mz74lsl20g5bi7fcdm8n87bwcnl46gpb")))) + (build-system cargo-build-system) + (arguments + `(#:tests? #false + #:cargo-inputs + (("rust-lazy-static" ,rust-lazy-static-1) + ("rust-log" ,rust-log-0.4)) + #:cargo-development-inputs + (("rust-kv-log-macro" ,rust-kv-log-macro-1)))) + (home-page "https://github.com/yoshuawuyts/logtest") + (synopsis "Test and assert log statements") + (description "This package tests and asserts log statements.") + (license (list license:expat license:asl2.0)))) + (define-public rust-loom-0.4 (package (name "rust-loom") @@ -19135,8 +19474,32 @@ file IO.") #:cargo-development-inputs (("rust-tempdir" ,rust-tempdir-0.3)))))) +(define-public rust-memoffset-0.6 + (package + (name "rust-memoffset") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "memoffset" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "11yxgw330cf8g4wy0fnb20ag8gg1b33fsnfmg2g8z6h5wc444yqm")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-autocfg" ,rust-autocfg-1)))) + (home-page "https://github.com/Gilnaa/memoffset") + (synopsis "C-like offset_of functionality for Rust structs") + (description + "This package provides C-like @code{offset_of} functionality +for Rust structs.") + (license license:expat))) + (define-public rust-memoffset-0.5 (package + (inherit rust-memoffset-0.6) (name "rust-memoffset") (version "0.5.3") (source @@ -19148,19 +19511,12 @@ file IO.") (sha256 (base32 "1fblqzc25hfaym8m0pj112s66pqq87avvaqm5hp5rskib2w9w63m")))) - (build-system cargo-build-system) (arguments `(#:skip-build? #t #:cargo-inputs (("rust-rustc-version" ,rust-rustc-version-0.2)) #:cargo-development-inputs - (("rust-doc-comment" ,rust-doc-comment-0.3)))) - (home-page "https://github.com/Gilnaa/memoffset") - (synopsis - "C-like offset_of functionality for Rust structs") - (description "This package provides C-like @code{offset_of} functionality -for Rust structs.") - (license license:expat))) + (("rust-doc-comment" ,rust-doc-comment-0.3)))))) (define-public rust-memoffset-0.2 (package @@ -21517,6 +21873,62 @@ primitives and enums easier.") primitives and enums easier.") (license license:bsd-3))) +(define-public rust-num-format-0.4 + (package + (name "rust-num-format") + (version "0.4.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "num-format" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0r94i9lhr15hk32494v9my31r0829w29yyp7iql98a1cf9wl3zms")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-arrayvec" ,rust-arrayvec-0.4) + ("rust-cfg-if" ,rust-cfg-if-0.1) + ("rust-encoding-rs" ,rust-encoding-rs-0.8) + ("rust-itoa" ,rust-itoa-0.4) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-libc" ,rust-libc-0.2) + ("rust-num-bigint" ,rust-num-bigint-0.2) + ("rust-num-format-windows" ,rust-num-format-windows-0.3) + ("rust-serde" ,rust-serde-1) + ("rust-widestring" ,rust-widestring-0.4) + ("rust-winapi" ,rust-winapi-0.3)))) + (home-page "https://github.com/bcmyers/num-format") + (synopsis "Produce string-representations of numbers") + (description + "This package provides a Rust crate for producing string-representations +of numbers, formatted according to international standards.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-num-format-windows-0.3 + (package + (name "rust-num-format-windows") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "num-format-windows" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1sy5jxrbhv6s28c51ibzi34s8qcjm8b21nf7biray7v1qi89h5sf")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-bindgen" ,rust-bindgen-0.47)))) + (home-page "https://github.com/bcmyers/num-format/num-format-windows") + (synopsis "Helper crate for @code{num-format}") + (description + "This package provides a helper crate for num-format. Do not use it +directly.") + (license (list license:expat license:asl2.0)))) + (define-public rust-num-integer-0.1 (package (name "rust-num-integer") @@ -22813,18 +23225,18 @@ unparking.") (define-public rust-parking-lot-0.11 (package (name "rust-parking-lot") - (version "0.11.0") + (version "0.11.1") (source (origin (method url-fetch) (uri (crate-uri "parking_lot" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0cw73942xhxb7a49mp9gkjnlwc8acr30wpfs8zk758icz92ki2d4")))) + (base32 "1sqmgaia8zfd5fbnqw2w13ijh7crk3lf9vw4cb52vwlx0an48xvd")))) (build-system cargo-build-system) (arguments - `(#:cargo-inputs + `(#:skip-build? #t + #:cargo-inputs (("rust-instant" ,rust-instant-0.1) ("rust-lock-api" ,rust-lock-api-0.4) ("rust-parking-lot-core" ,rust-parking-lot-core-0.8)) @@ -22832,9 +23244,11 @@ unparking.") (("rust-bincode" ,rust-bincode-1) ("rust-rand" ,rust-rand-0.7)))) (home-page "https://github.com/Amanieu/parking_lot") - (synopsis "More compact and efficient implementations of the standard synchronization primitives") - (description "This package provides more compact and efficient -implementations of the standard synchronization primitives.") + (synopsis + "Efficient implementations of the standard synchronization primitives") + (description + "This package provides more compact and efficient implementations +of the standard synchronization primitives.") (license (list license:asl2.0 license:expat)))) (define-public rust-parking-lot-0.10 @@ -23080,6 +23494,28 @@ synchronization primitives.") ("rust-winapi" ,rust-winapi-0.3) ("rust-rustc-version" ,rust-rustc-version-0.2)))))) +(define-public rust-parse-zoneinfo-0.3 + (package + (name "rust-parse-zoneinfo") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "parse-zoneinfo" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0h8g6jy4kckn2gk8sd5adaws180n1ip65xhzw5jxlq4w8ibg41f7")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-regex" ,rust-regex-1)))) + (home-page "") + (synopsis "Parse zoneinfo files from the IANA database") + (description + "This packages parses zoneinfo files from the IANA database.") + (license license:expat))) + (define-public rust-partial-io-0.3 (package (name "rust-partial-io") @@ -26077,19 +26513,48 @@ that must be shared-mutable, but merely may use atomic instructions to do so.") radix.") (license license:asl2.0))) +(define-public rust-rand-0.8 + (package + (name "rust-rand") + (version "0.8.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "07lb17qj02bi17mhqxlmsiyf4g8cmplm6hbiw5hxc900li19nl8q")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-libc" ,rust-libc-0.2) + ("rust-log" ,rust-log-0.4) + ("rust-packed-simd-2" ,rust-packed-simd-2-0.3) + ("rust-rand-chacha" ,rust-rand-chacha-0.3) + ("rust-rand-core" ,rust-rand-core-0.6) + ("rust-rand-hc" ,rust-rand-hc-0.3) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://crates.io/crates/rand") + (synopsis "Random number generators and other randomness functionality") + (description + "Rand provides utilities to generate random numbers, to convert them to +useful types and distributions, and some randomness-related algorithms.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-0.7 (package + (inherit rust-rand-0.8) (name "rust-rand") (version "0.7.3") (source - (origin - (method url-fetch) - (uri (crate-uri "rand" version)) - (file-name (string-append name "-" version ".crate")) - (sha256 - (base32 - "00sdaimkbz491qgi6qxkv582yivl32m2jd401kzbn94vsiwicsva")))) - (build-system cargo-build-system) + (origin + (method url-fetch) + (uri (crate-uri "rand" version)) + (file-name (string-append name "-" version ".crate")) + (sha256 + (base32 + "00sdaimkbz491qgi6qxkv582yivl32m2jd401kzbn94vsiwicsva")))) (arguments `(#:cargo-inputs (("rust-getrandom" ,rust-getrandom-0.1) @@ -26102,14 +26567,7 @@ radix.") ("rust-rand-pcg" ,rust-rand-pcg-0.2)) #:cargo-development-inputs (("rust-rand-hc" ,rust-rand-hc-0.2) - ("rust-rand-pcg" ,rust-rand-pcg-0.2)))) - (home-page "https://crates.io/crates/rand") - (synopsis "Random number generators and other randomness functionality") - (description - "Rand provides utilities to generate random numbers, to convert them to -useful types and distributions, and some randomness-related algorithms.") - (license (list license:asl2.0 - license:expat)))) + ("rust-rand-pcg" ,rust-rand-pcg-0.2)))))) (define-public rust-rand-0.6 (package @@ -26211,8 +26669,32 @@ useful types and distributions, and some randomness-related algorithms.") (("rust-libc" ,rust-libc-0.2) ("rust-rand" ,rust-rand-0.4)))))) +(define-public rust-rand-chacha-0.3 + (package + (name "rust-rand-chacha") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_chacha" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "03df2xh5nbdvwr17qm3sviaxa95r8yhm1nil2pr0pqf90p7ka9z1")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-ppv-lite86" ,rust-ppv-lite86-0.2) + ("rust-rand-core" ,rust-rand-core-0.6)))) + (home-page "https://crates.io/crates/rand_chacha") + (synopsis "ChaCha random number generator") + (description + "This package provides the ChaCha random number generator.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-chacha-0.2 (package + (inherit rust-rand-chacha-0.3) (name "rust-rand-chacha") (version "0.2.2") (source @@ -26224,15 +26706,10 @@ useful types and distributions, and some randomness-related algorithms.") (sha256 (base32 "00il36fkdbsmpr99p9ksmmp6dn1md7rmnwmz0rr77jbrca2yvj7l")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-c2-chacha" ,rust-c2-chacha-0.2) - ("rust-rand-core" ,rust-rand-core-0.5)))) - (home-page "https://crates.io/crates/rand-chacha") - (synopsis "ChaCha random number generator") - (description "ChaCha random number generator.") - (license (list license:asl2.0 license:expat)))) + ("rust-rand-core" ,rust-rand-core-0.5)))))) (define-public rust-rand-chacha-0.1 (package @@ -26253,8 +26730,33 @@ useful types and distributions, and some randomness-related algorithms.") #:cargo-development-inputs (("rust-autocfg" ,rust-autocfg-0.1)))))) +(define-public rust-rand-core-0.6 + (package + (name "rust-rand-core") + (version "0.6.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_core" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1rfjrcyaj7blz2nawv2pypm5kqc59p80n6f5pg691399iggxf9n0")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-getrandom" ,rust-getrandom-0.2) + ("rust-serde" ,rust-serde-1)))) + (home-page "https://rust-random.github.io/book") + (synopsis "Core random number generator traits and tools") + (description + "This package provides core random number generator traits and +tools for implementation.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-core-0.5 (package + (inherit rust-rand-core-0.6) (name "rust-rand-core") (version "0.5.1") (source @@ -26266,17 +26768,10 @@ useful types and distributions, and some randomness-related algorithms.") (sha256 (base32 "06bdvx08v3rkz451cm7z59xwwqn1rkfh6v9ay77b14f8dwlybgch")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-getrandom" ,rust-getrandom-0.1) - ("rust-serde" ,rust-serde-1)))) - (home-page "https://crates.io/crates/rand-core") - (synopsis - "Core random number generator traits and tools for implementation") - (description - "Core random number generator traits and tools for implementation.") - (license (list license:expat license:asl2.0)))) + ("rust-serde" ,rust-serde-1)))))) (define-public rust-rand-core-0.4 (package @@ -26359,8 +26854,32 @@ useful types and distributions, and some randomness-related algorithms.") "Sampling from random number distributions.") (license (list license:expat license:asl2.0)))) +(define-public rust-rand-hc-0.3 + (package + (name "rust-rand-hc") + (version "0.3.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "rand_hc" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0wra6ar22zdjkry9dsq1mg620m4h3qb9s8rfykkz4im4crqfz41i")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-rand-core" ,rust-rand-core-0.6)))) + (home-page "https://crates.io/crates/rand_hc") + (synopsis "HC128 random number generator") + (description "This package provides a cryptographically secure random number +generator that uses the HC-128 algorithm.") + (license (list license:expat license:asl2.0)))) + (define-public rust-rand-hc-0.2 (package + (inherit rust-rand-hc-0.3) (name "rust-rand-hc") (version "0.2.0") (source @@ -26371,16 +26890,9 @@ useful types and distributions, and some randomness-related algorithms.") (sha256 (base32 "0g31sqwpmsirdlwr0svnacr4dbqyz339im4ssl9738cjgfpjjcfa")))) - (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-rand-hc" ,rust-rand-core-0.5)))) - (home-page "https://crates.io/crates/rand_hc") - (synopsis "HC128 random number generator") - (description "This package provides a cryptographically secure random number -generator that uses the HC-128 algorithm.") - (license (list license:asl2.0 - license:expat)))) + (("rust-rand-hc" ,rust-rand-core-0.5)))))) (define-public rust-rand-hc-0.1 (package @@ -26858,21 +27370,19 @@ accessors.") (define-public rust-rayon-1 (package (name "rust-rayon") - (version "1.3.1") + (version "1.5.0") (source (origin (method url-fetch) (uri (crate-uri "rayon" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "104h6i5lcp9kx8g80jgqf6z7wcqa186q57wj4qzf011xfmb2iw32")))) + (base32 "0x2n4zkrm6z3avdfh7zgcwx0wq6hx8332dx89v3j1p7s3448w3cb")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-autocfg" ,rust-autocfg-1) - ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.7) + ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.8) ("rust-either" ,rust-either-1) ("rust-rayon-core" ,rust-rayon-core-1)) #:cargo-development-inputs @@ -26884,7 +27394,8 @@ accessors.") (home-page "https://github.com/rayon-rs/rayon") (synopsis "Simple work-stealing parallelism for Rust") (description - "Simple work-stealing parallelism for Rust.") + "This package provides a simple work-stealing parallelism for +Rust.") (license (list license:asl2.0 license:expat)))) (define-public rust-rayon-0.8 @@ -26913,25 +27424,23 @@ accessors.") (define-public rust-rayon-core-1 (package (name "rust-rayon-core") - (version "1.7.1") + (version "1.9.0") (source (origin (method url-fetch) (uri (crate-uri "rayon-core" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "101jjwkcfw5jk31695gbdm163iicc2pz349q6l8lwj43j3c1abp9")))) + (base32 "0jpsi8zf66xyx4m5f329lpgiql8775vpm6zqm7zn5p11b6n4dcws")))) (build-system cargo-build-system) (arguments - `(;; One of the tests attempts to overflow the stack, but the compiler - ;; has since gotten smarter and the test became defective. - #:tests? #f + ;; One of the tests attempts to overflow the stack, but the compiler has + ;; since gotten smarter and the test became defective. + `(#:tests? #f #:cargo-inputs - (("rust-crossbeam-deque" ,rust-crossbeam-deque-0.7) - ("rust-crossbeam-queue" ,rust-crossbeam-queue-0.2) - ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.7) + (("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5) + ("rust-crossbeam-deque" ,rust-crossbeam-deque-0.8) + ("rust-crossbeam-utils" ,rust-crossbeam-utils-0.8) ("rust-lazy-static" ,rust-lazy-static-1) ("rust-num-cpus" ,rust-num-cpus-1)) #:cargo-development-inputs @@ -26941,8 +27450,8 @@ accessors.") ("rust-scoped-tls" ,rust-scoped-tls-1)))) (home-page "https://github.com/rayon-rs/rayon") (synopsis "Core APIs for Rayon") - (description "Core APIs for Rayon.") - (license (list license:expat license:asl2.0)))) + (description "This package provides core APIs for Rayon.") + (license (list license:asl2.0 license:expat)))) (define-public rust-rctree-0.3 (package @@ -27199,15 +27708,14 @@ functionality.") (define-public rust-regex-1 (package (name "rust-regex") - (version "1.4.2") + (version "1.4.3") (source (origin (method url-fetch) (uri (crate-uri "regex" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "172bw2yryv65whn3n5vkww4kgk0bq08lx0zbln8xwia7xl9jrkrq")))) + (base32 "12llbg82js69mdl50lav4yn1iqlx71ckb18dww467q99w4wi49fr")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -27320,21 +27828,20 @@ uses finite automata and guarantees linear time matching on all inputs.") (define-public rust-regex-syntax-0.6 (package (name "rust-regex-syntax") - (version "0.6.21") + (version "0.6.22") (source (origin (method url-fetch) (uri (crate-uri "regex-syntax" version)) - (file-name (string-append name "-" version ".crate")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "12d176jkgw9749g07zjxz0n78nyvb2nqx3j4sp5aqyphvji1n61v")))) + (base32 "10b56ylil35jkb4nwqxm8hbyx3zq7fws0wpydjln165s8xql3sxm")))) (build-system cargo-build-system) (home-page "https://github.com/rust-lang/regex") (synopsis "Regular expression parser") (description "This package provides a regular expression parser.") - (license (list license:asl2.0 - license:expat)))) + (license (list license:expat license:asl2.0)))) (define-public rust-regex-syntax-0.5 (package @@ -27861,6 +28368,25 @@ Rust Language Server.") (;("rust-serde-bytes" ,rust-serde-bytes-0.10) ("rust-serde-json" ,rust-serde-json-1)))))) +(define-public rust-route-recognizer-0.2 + (package + (name "rust-route-recognizer") + (version "0.2.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "route-recognizer" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "17mmnyzg7yr5x84n28y6bll1qn21g11k61p6sgg2fjf0xdshcxsn")))) + (build-system cargo-build-system) + (home-page "https://github.com/http-rs/route-recognizer") + (synopsis "Recognizes URL patterns") + (description + "This package helps recognizing URL patterns with support for dynamic and +wildcard segments") + (license license:expat))) + (define-public rust-rspec-1 (package (name "rust-rspec") @@ -29384,7 +29910,7 @@ quickly convert floating point numbers to decimal strings.") (license (list license:asl2.0 license:expat)))) -(define-public rust-same-file-1.0 +(define-public rust-same-file-1 (package (name "rust-same-file") (version "1.0.6") @@ -29412,7 +29938,7 @@ paths point to the same file.") (define-public rust-same-file-0.1 (package - (inherit rust-same-file-1.0) + (inherit rust-same-file-1) (name "rust-same-file") (version "0.1.3") (source @@ -30789,15 +31315,14 @@ for the serde framework.") (define-public rust-serde-json-1 (package (name "rust-serde-json") - (version "1.0.60") + (version "1.0.61") (source (origin (method url-fetch) - (uri (crate-uri "serde-json" version)) + (uri (crate-uri "serde_json" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0yapc7xxk8dx12691yj0l13008rgvknmc6krvk8jwj7y4x6yh00m")))) + (base32 "0nijvxvgcncvd1wbn73zx7q14bdxah0gf2789qd8kdjpa1cv5kjg")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs @@ -31087,32 +31612,28 @@ the application/x-www-form-urlencoded format.") (define-public rust-serde-yaml-0.8 (package (name "rust-serde-yaml") - (version "0.8.11") + (version "0.8.15") (source (origin (method url-fetch) (uri (crate-uri "serde_yaml" version)) - (file-name - (string-append name "-" version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 - "0d9wdjrlx9gxg80kzc6pvdwz5pwhja2n8n0bxja9vv61kzqif6v9")))) + (base32 "17q8rshlq56z6zna7wxhk9pihna3s5qdz8q5niip396lwkvfh6wp")))) (build-system cargo-build-system) (arguments - `(#:skip-build? #t - #:cargo-inputs + `(#:cargo-inputs (("rust-dtoa" ,rust-dtoa-0.4) ("rust-linked-hash-map" ,rust-linked-hash-map-0.5) ("rust-serde" ,rust-serde-1) ("rust-yaml-rust" ,rust-yaml-rust-0.4)) #:cargo-development-inputs - (("rust-serde-derive" ,rust-serde-derive-1) - ("rust-unindent" ,rust-unindent-0.1)))) - (home-page - "https://github.com/dtolnay/serde-yaml") + (("rust-indoc" ,rust-indoc-1) + ("rust-serde-derive" ,rust-serde-derive-1)))) + (home-page "https://github.com/dtolnay/serde-yaml") (synopsis "YAML support for Serde") - (description "YAML support for Serde.") - (license (list license:asl2.0 license:expat)))) + (description "This package provides YAML support for Serde.") + (license (list license:expat license:asl2.0)))) (define-public rust-serial-test-0.5 (package @@ -32267,6 +32788,30 @@ data type.") license:expat license:asl2.0)))) +(define-public rust-slug-0.1 + (package + (name "rust-slug") + (version "0.1.4") + (source + (origin + (method url-fetch) + (uri (crate-uri "slug" version)) + (file-name + (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0wrk0w7mcmnvpmc27fw8dxkip6f6xgwpfgp7mp56yv2bd8p7dg5k")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-deunicode" ,rust-deunicode-0.4)))) + (home-page "https://github.com/Stebalien/slug-rs") + (synopsis "Convert a Unicode string to a slug") + (description + "This package is a small library for generating slugs from +Unicode strings.") + (license (list license:expat license:asl2.0)))) + (define-public rust-sluice-0.5 (package (name "rust-sluice") @@ -34490,6 +35035,52 @@ memory all at once.") "Targeting utilities for compilers and related tools") (license license:asl2.0))) +(define-public rust-tectonic-cfg-support-0.1 + (package + (name "rust-tectonic-cfg-support") + (version "0.1.2") + (source + (origin + (method url-fetch) + (uri (crate-uri "tectonic_cfg_support" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1jsbk89g4s75cdav6350anls81k3lwaq6imhjb4q2c4cmr24i1cz")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-lazy-static" ,rust-lazy-static-1)))) + (home-page "https://tectonic-typesetting.github.io/") + (synopsis "Support crate for @code{CARGO_CFG_TARGET_*} variables") + (description + "This package provides a build.rs support crate that helps deal +with @code{CARGO_CFG_TARGET_*} variables.") + (license license:expat))) + +(define-public rust-tectonic-xdv-0.1 + (package + (name "rust-tectonic-xdv") + (version "0.1.11") + (source + (origin + (method url-fetch) + (uri (crate-uri "tectonic_xdv" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1ibxv32i7dla3iw6s01cagzgdgzhm1mmxwqjv841m6m4r7g57gxj")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-byteorder" ,rust-byteorder-1)))) + (home-page "https://tectonic-typesetting.github.io/") + (synopsis "Decoder for the XDV and SPX file formats") + (description + "This package provides a decoder for the XDV and SPX file formats +used by XeTeX and Tectonic.") + (license license:expat))) + (define-public rust-tempdir-0.3 (package (name "rust-tempdir") @@ -34597,6 +35188,42 @@ directories.") "Compact buffer/string type for zero-copy parsing.") (license (list license:expat license:asl2.0)))) +(define-public rust-tera-1 + (package + (name "rust-tera") + (version "1.6.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "tera" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1p7qzd8akd4xk4b23dmdrqw9q8061xkl1mar34j3f2glmizapipa")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-chrono" ,rust-chrono-0.4) + ("rust-chrono-tz" ,rust-chrono-tz-0.5) + ("rust-globwalk" ,rust-globwalk-0.8) + ("rust-humansize" ,rust-humansize-1) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-percent-encoding" ,rust-percent-encoding-2) + ("rust-pest" ,rust-pest-2) + ("rust-pest-derive" ,rust-pest-derive-2) + ("rust-rand" ,rust-rand-0.8) + ("rust-regex" ,rust-regex-1) + ("rust-serde" ,rust-serde-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-slug" ,rust-slug-0.1) + ("rust-unic-segment" ,rust-unic-segment-0.9)))) + (home-page "https://tera.netlify.com/") + (synopsis "Template engine based on Jinja2/Django templates") + (description + "Tera is a template engine inspired by Jinja2 and the Django +template language.") + (license license:expat))) + (define-public rust-term-0.6 (package (name "rust-term") @@ -38431,6 +39058,148 @@ panic-free alternative to @code{core::fmt}.") "Unchecked indexing wrapper using regular index syntax.") (license (list license:asl2.0 license:expat)))) +(define-public rust-unic-char-property-0.9 + (package + (name "rust-unic-char-property") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-char-property" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "08g21dn3wwix3ycfl0vrbahn0835nv2q3swm8wms0vwvgm07mid8")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-unic-char-range" ,rust-unic-char-range-0.9)))) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Character property taxonomy, contracts and macros for UNIC") + (description + "This package provides character property taxonomy, contracts and +build macros for the Unicode and Internationalization Crates (UNIC) +project.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-unic-char-range-0.9 + (package + (name "rust-unic-char-range") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-char-range" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1g0z7iwvjhqspi6194zsff8vy6i3921hpqcrp3v1813hbwnh5603")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-rayon" ,rust-rayon-1)))) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Character range and iteration for UNIC") + (description + "This package provides Unicode character range and iteration for +the Unicode and Internationalization Crates (UNIC) project.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-unic-common-0.9 + (package + (name "rust-unic-common") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-common" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1g1mm954m0zr497dl4kx3vr09yaly290zs33bbl4wrbaba1gzmw0")))) + (build-system cargo-build-system) + (arguments `(#:skip-build? #t)) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Common utilities for UNIC") + (description + "This package provides common utilities for the Unicode and +Internationalization Crates (UNIC) project.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-unic-segment-0.9 + (package + (name "rust-unic-segment") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-segment" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "08wgz2q6vrdvmbd23kf9pbg8cyzm5q8hq9spc4blzy2ppqk5vvg4")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-unic-ucd-segment" ,rust-unic-ucd-segment-0.9)))) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Text segmentation algorithmes for UNIC") + (description + "This UNIC component implements algorithms from Unicode Standard +Annex #29 - Unicode Text Segmentation, used for detecting boundaries +of text element boundaries, such as user-perceived characters (a.k.a. +grapheme clusters), words, and sentences.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-unic-ucd-segment-0.9 + (package + (name "rust-unic-ucd-segment") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-ucd-segment" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "0027lczcg0r401g6fnzm2bq9fxhgxvri1nlryhhv8192lqic2y90")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-unic-char-property" ,rust-unic-char-property-0.9) + ("rust-unic-char-range" ,rust-unic-char-range-0.9) + ("rust-unic-ucd-version" ,rust-unic-ucd-version-0.9)))) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Segmentation properties for the UNIC Unicode character database") + (description + "This package provides segmentation properties in the Unicode +character database for the Unicode and Internationalization +Crates (UNIC) project.") + (license (list license:expat license:asl2.0)))) + +(define-public rust-unic-ucd-version-0.9 + (package + (name "rust-unic-ucd-version") + (version "0.9.0") + (source + (origin + (method url-fetch) + (uri (crate-uri "unic-ucd-version" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "1i5hnzpfnxkp4ijfk8kvhpvj84bij575ybqx1b6hyigy6wi2zgcn")))) + (build-system cargo-build-system) + (arguments + `(#:skip-build? #t + #:cargo-inputs + (("rust-unic-common" ,rust-unic-common-0.9)))) + (home-page "https://github.com/open-i18n/rust-unic/") + (synopsis "Unicode character database for UNIC") + (description + "This package provides a Unicode character database for the +Unicode and Internationalization Crates (UNIC) project.") + (license (list license:expat license:asl2.0)))) + (define-public rust-unicase-2 (package (name "rust-unicase") @@ -38631,14 +39400,14 @@ or XID_Continue properties according to Unicode Standard Annex #31.") (define-public rust-unindent-0.1 (package (name "rust-unindent") - (version "0.1.6") + (version "0.1.7") (source (origin (method url-fetch) (uri (crate-uri "unindent" version)) - (file-name (string-append name "-" version ".crate")) + (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "0hl9l4w9mhv5qacx7cirm6rarrphw35b5syw2plx13vz884dfhdg")))) + (base32 "1is1gmx1l89z426rn3xsi0mii4vhy2imhqmhx8x2pd8mji6y0kpi")))) (build-system cargo-build-system) (home-page "https://github.com/dtolnay/indoc") (synopsis "Remove a column of leading whitespace from a string") @@ -39523,7 +40292,7 @@ specified across Unix and Windows platforms.") #:cargo-inputs (("rust-winapi-util" ,rust-winapi-util-0.1) ("rust-winapi" ,rust-winapi-0.3) - ("rust-same-file" ,rust-same-file-1.0)))) + ("rust-same-file" ,rust-same-file-1)))) (home-page "https://github.com/BurntSushi/walkdir") (synopsis "Recursively walk a directory") (description "Recursively walk a directory.") @@ -40334,7 +41103,7 @@ using @code{bindgen}.") installed executable in cross platforms.") (license license:expat))) -(define-public rust-which-2.0 +(define-public rust-which-2 (package (name "rust-which") (version "2.0.1") @@ -40364,7 +41133,7 @@ Locate installed executable in cross platforms.") (define-public rust-which-1.0 (package - (inherit rust-which-2.0) + (inherit rust-which-2) (name "rust-which") (version "1.0.5") (source @@ -40879,7 +41648,7 @@ extended attributes.") "This package provides Rust bindings and wrappers for XCB.") (license license:expat))) -(define-public rust-xdg-2.2 +(define-public rust-xdg-2 (package (name "rust-xdg") (version "2.2.0") @@ -41017,25 +41786,24 @@ Read/Write streams as well as low-level in-memory encoding and decoding.") (define-public rust-yaml-rust-0.4 (package (name "rust-yaml-rust") - (version "0.4.4") + (version "0.4.5") (source (origin (method url-fetch) (uri (crate-uri "yaml-rust" version)) (file-name (string-append name "-" version ".tar.gz")) (sha256 - (base32 "038byay0dxsz6isckviz4qshfpyjqmyvda7pq96i6d53y4ickw1r")))) + (base32 "118wbqrr4n6wgk5rjjnlrdlahawlxc1bdsx146mwk8f79in97han")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs (("rust-linked-hash-map" ,rust-linked-hash-map-0.5)) #:cargo-development-inputs (("rust-quickcheck" ,rust-quickcheck-0.9)))) - (home-page "https://chyh1990.github.io/yaml-rust/") - (synopsis "The missing YAML 1.2 parser for rust") - (description - "The missing YAML 1.2 parser for rust.") - (license (list license:asl2.0 license:expat)))) + (home-page "http://chyh1990.github.io/yaml-rust/") + (synopsis "YAML 1.2 parser for Rust") + (description "This package is a YAML 1.2 parser for Rust.") + (license (list license:expat license:asl2.0)))) (define-public rust-yaml-rust-0.3 (package diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm index c8ca5db1a0..51efee5157 100644 --- a/gnu/packages/cups.scm +++ b/gnu/packages/cups.scm @@ -1,11 +1,11 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2019, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2016, 2017, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Mark H Weaver <mhw@netris.org> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; ;;; This file is part of GNU Guix. @@ -47,6 +47,7 @@ #:use-module (gnu packages qt) #:use-module (gnu packages scanner) #:use-module (gnu packages tls) + #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module (guix build-system python) #:use-module (guix download) @@ -57,6 +58,73 @@ #:use-module (srfi srfi-1) #:use-module (ice-9 match)) +(define-public brlaser + (let ((commit "9d7ddda8383bfc4d205b5e1b49de2b8bcd9137f1") + (revision "1")) + (package + (name "brlaser") + (version (git-version "6" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/pdewacht/brlaser") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1drh0nk7amn9a8wykki4l9maqa4vy7vwminypfy1712alwj31nd4")))) + (build-system cmake-build-system) + (arguments + `(#:configure-flags + (list (string-append "-DCUPS_DATA_DIR=" + (assoc-ref %outputs "out") + "/share/cups") + (string-append "-DCUPS_SERVER_BIN=" + (assoc-ref %outputs "out") + "/lib/cups")))) + (inputs + `(("ghostscript" ,ghostscript) + ("cups" ,cups) + ("zlib" ,zlib))) + (home-page "https://github.com/pdewacht/brlaser") + (synopsis "Brother laser printer driver") + (description "Brlaser is a CUPS driver for Brother laser printers. This +driver is known to work with these printers: + +@enumerate +@item Brother DCP-1510 series +@item Brother DCP-1600 series +@item Brother DCP-7030 +@item Brother DCP-7040 +@item Brother DCP-7055 +@item Brother DCP-7055W +@item Brother DCP-7060D +@item Brother DCP-7065DN +@item Brother DCP-7080 +@item Brother DCP-L2500D series +@item Brother DCP-L2520D series +@item Brother DCP-L2540DW series +@item Brother HL-1110 series +@item Brother HL-1200 series +@item Brother HL-2030 series +@item Brother HL-2140 series +@item Brother HL-2220 series +@item Brother HL-2270DW series +@item Brother HL-5030 series +@item Brother HL-L2300D series +@item Brother HL-L2320D series +@item Brother HL-L2340D series +@item Brother HL-L2360D series +@item Brother MFC-1910W +@item Brother MFC-7240 +@item Brother MFC-7360N +@item Brother MFC-7365DN +@item Brother MFC-7840W +@item Brother MFC-L2710DW series +@item Lenovo M7605D +@end enumerate") + (license license:gpl2+)))) + (define-public cups-filters (package (name "cups-filters") diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 1d12ae6b8e..e24eb20608 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org> ;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com> ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017, 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com> ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com> @@ -46,6 +46,7 @@ ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> +;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -85,15 +86,16 @@ #:use-module (gnu packages gettext) #:use-module (gnu packages glib) #:use-module (gnu packages gnupg) - #:use-module (gnu packages guile) - #:use-module (gnu packages time) #:use-module (gnu packages golang) + #:use-module (gnu packages guile) #:use-module (gnu packages icu4c) #:use-module (gnu packages jemalloc) #:use-module (gnu packages language) #:use-module (gnu packages libedit) #:use-module (gnu packages libevent) #:use-module (gnu packages linux) + #:use-module (gnu packages lisp) + #:use-module (gnu packages lisp-xyz) #:use-module (gnu packages logging) #:use-module (gnu packages man) #:use-module (gnu packages maths) @@ -110,8 +112,8 @@ #:use-module (gnu packages protobuf) #:use-module (gnu packages python) #:use-module (gnu packages python-crypto) - #:use-module (gnu packages python-web) #:use-module (gnu packages python-science) + #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rdf) #:use-module (gnu packages readline) @@ -124,6 +126,7 @@ #:use-module (gnu packages tcl) #:use-module (gnu packages terminals) #:use-module (gnu packages textutils) + #:use-module (gnu packages time) #:use-module (gnu packages tls) #:use-module (gnu packages valgrind) #:use-module (gnu packages web) @@ -1278,6 +1281,89 @@ pictures, sounds, or video.") (define-public postgresql postgresql-13) +(define-public pgloader + (package + (name "pgloader") + (version "3.6.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dimitri/pgloader") + (commit (string-append "v" version)))) + (sha256 + (base32 "06i1jd2za3ih5caj2b4vzlzags5j65vv8dfdbz0ggdrp40wfd5lh")) + (file-name (git-file-name name version)))) + (build-system gnu-build-system) + (arguments + ;; NOTE: (Sharlatan-20210119T211511+0000) Tests are disabled due to being + ;; dependent on Quicklisp, main build target is `pgloader-standalone' which + ;; does not require Quicklisp workarounds. There is no `install' target + ;; configured in Makefile. + `(#:tests? #f + #:strip-binaries? #f + #:make-flags + (list "pgloader-standalone" "BUILDAPP_SBCL=buildapp") + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'set-home + (lambda _ + (setenv "HOME" "/tmp") + #t)) + (add-after 'unpack 'patch-Makefile + (lambda _ + (substitute* "Makefile" + (("--sbcl.*") "--sbcl $(CL) --asdf-path . \\\n")) + #t)) + (replace 'install + (lambda* (#:key outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (mkdir-p bin) + (install-file "build/bin/pgloader" bin)) + #t))))) + (native-inputs + `(("buildapp" ,buildapp) + ("sbcl" ,sbcl))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cl-abnf" ,sbcl-cl-abnf) + ("cl-base64" ,sbcl-cl-base64) + ("cl-csv" ,sbcl-cl-csv) + ("cl-fad" ,sbcl-cl-fad) + ("cl-log" ,sbcl-cl-log) + ("cl-markdown" ,sbcl-cl-markdown) + ("cl-mustache" ,sbcl-cl-mustache) + ("cl-ppcre" ,sbcl-cl-ppcre) + ("cl-sqlite" ,sbcl-cl-sqlite) + ("closer-mop" ,sbcl-closer-mop) + ("command-line-arguments" ,sbcl-command-line-arguments) + ("db3" ,sbcl-db3) + ("drakma" ,sbcl-drakma) + ("esrap" ,sbcl-esrap) + ("flexi-streams" ,sbcl-flexi-streams) + ("ixf" ,sbcl-ixf) + ("local-time" ,sbcl-local-time) + ("lparallel" ,sbcl-lparallel) + ("metabang-bind" ,sbcl-metabang-bind) + ("mssql" ,sbcl-mssql) + ("postmodern" ,sbcl-postmodern) + ("py-configparser" ,sbcl-py-configparser) + ("qmynd" ,sbcl-qmynd) + ("quri" ,sbcl-quri) + ("split-sequence" ,sbcl-split-sequence) + ("trivial-backtrace" ,sbcl-trivial-backtrace) + ("usocket" ,sbcl-usocket) + ("uuid" ,sbcl-uuid) + ("yason" ,sbcl-yason) + ("zs3" ,sbcl-zs3))) + (home-page "https://pgloader.io/") + (synopsis "Tool to migrate data to PostgreSQL") + (description + "@code{pgloader} is a program that can load data or migrate databases from +CSV, DB3, iXF, SQLite, MS-SQL or MySQL to PostgreSQL.") + (license (license:x11-style "file://LICENSE")))) + (define-public python-pymysql (package (name "python-pymysql") @@ -2163,14 +2249,14 @@ similar to BerkeleyDB, LevelDB, etc.") (define-public redis (package (name "redis") - (version "6.0.9") + (version "6.0.10") (source (origin (method url-fetch) (uri (string-append "http://download.redis.io/releases/redis-" version".tar.gz")) (sha256 (base32 - "1pc6gyiylrcazlc559dp5mxqj733pk9qabnirw4ry3k23kwdqayw")) + "1gc529nfh8frk4pynyjlnmzvwa0j9r5cmqwyd7537sywz6abifvr")) (modules '((guix build utils))) (snippet ;; Delete bundled jemalloc, as the package will use the libc one @@ -2215,14 +2301,14 @@ sets, bitmaps and hyperloglogs.") (define-public kyotocabinet (package (name "kyotocabinet") - (version "1.2.78") + (version "1.2.79") (source (origin (method url-fetch) (uri (string-append "https://fallabs.com/kyotocabinet/pkg/" "kyotocabinet-" version ".tar.gz")) (sha256 (base32 - "1bxkf9kmcavq9rqridb8mvmrk3hj4447ffi24m2admsbm61n6k29")))) + "079ymsahlrijswgwfr2la9yw5h57l752cprhp5dz31iamsj1vyv7")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -3986,3 +4072,26 @@ The drivers officially supported by @code{libdbi} are: PostreSQL, SQLite, ODBC and MySQL.") (home-page "http://soci.sourceforge.net/") (license license:boost1.0))) + +(define-public freetds + (package + (name "freetds") + (version "1.2.18") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.freetds.org/files/stable/" + "freetds-" version ".tar.gz")) + (sha256 + (base32 "1hspvwxwdd1apadsy2b40dpjik8kfwcvdamvhpg3lnm15n02fb50")))) + (build-system gnu-build-system) + (arguments + ;; NOTE: (Sharlatan-20210110213908+0000) some tests require DB connection, + ;; disabled for now. + `(#:tests? #f)) + (home-page "https://www.freetds.org/") + (synopsis "Client libraries for MS SQL and Sybase servers") + (description + "FreeTDS is an implementation of the Tabular DataStream protocol, used for +connecting to MS SQL and Sybase servers over TCP/IP.") + (license license:lgpl2.0+))) diff --git a/gnu/packages/diffoscope.scm b/gnu/packages/diffoscope.scm index df29704acf..53cdbd8d84 100644 --- a/gnu/packages/diffoscope.scm +++ b/gnu/packages/diffoscope.scm @@ -72,7 +72,7 @@ (define-public diffoscope (package (name "diffoscope") - (version "162") + (version "164") (source (origin (method git-fetch) (uri (git-reference @@ -81,7 +81,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "02wjjbmdbyqpyizw384j50bc2ar4g5m40amz9q102gqbw6sflwbf")))) + "0vjxhz8p0k4y19sl1msrl8x4z3v205rlwj52k5hijv2gn9sqh795")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm index 3cc9601d21..3139063298 100644 --- a/gnu/packages/disk.scm +++ b/gnu/packages/disk.scm @@ -304,14 +304,14 @@ tables, and it understands a variety of different formats.") (define-public gptfdisk (package (name "gptfdisk") - (version "1.0.5") + (version "1.0.6") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gptfdisk/gptfdisk/" version "/gptfdisk-" version ".tar.gz")) (sha256 - (base32 "0bybgp30pqxb6x5krxazkq4drca0gz4inxj89fpyr204rn3kjz8f")))) + (base32 "1a4c2ss6n2s6x8v11h79jykh96y46apd6i838ka0ngx58gb53ifx")))) (build-system gnu-build-system) (inputs `(("gettext" ,gettext-minimal) @@ -860,7 +860,7 @@ to create devices with respective mappings for the ATARAID sets discovered.") (define-public libblockdev (package (name "libblockdev") - (version "2.24") + (version "2.25") (source (origin (method url-fetch) (uri (string-append "https://github.com/storaged-project/" @@ -868,7 +868,7 @@ to create devices with respective mappings for the ATARAID sets discovered.") version "-1/libblockdev-" version ".tar.gz")) (sha256 (base32 - "0wq7624pnprvfzrf39bq1cybd9lqwawbdg5bm0cchlpgvdq7q86w")))) + "0s0nazkpzpn4an00qghjkk9n7gdm5a8dqfr5hfnlk5mk5lma8njm")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm index 5bb725ae92..5e65eed7ed 100644 --- a/gnu/packages/dns.scm +++ b/gnu/packages/dns.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 John Darrington <jmd@gnu.org> ;;; Copyright © 2016 Nikita <nikita@n0.is> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2016, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com> ;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net> @@ -13,7 +13,7 @@ ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2019 Chris Marusich <cmmarusich@gmail.com> ;;; Copyright © 2019 Rutger Helling <rhelling@mykolab.com> -;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2020, 2021 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2020 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2020 Leo Famulari <leo@famulari.name> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> @@ -277,7 +277,7 @@ prompt the user with the option to go with insecure DNS only.") (define-public dnsmasq (package (name "dnsmasq") - (version "2.82") + (version "2.83") (source (origin (method url-fetch) (uri (string-append @@ -285,7 +285,7 @@ prompt the user with the option to go with insecure DNS only.") version ".tar.xz")) (sha256 (base32 - "0cn1xd1s6xs78jmrmwjnh9m6w3q38pk6dyqy2phvasqiyd33cll4")))) + "1sjamz1v588qf35m8z6wcqkjk5w12bqhj7d7p48dj8jyn3lgghgz")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -317,7 +317,7 @@ and BOOTP/TFTP for network booting of diskless machines.") (package (name "bind") ;; When updating, check whether isc-dhcp's bundled copy should be as well. - (version "9.16.10") + (version "9.16.11") (source (origin (method url-fetch) (uri (string-append @@ -325,7 +325,7 @@ and BOOTP/TFTP for network booting of diskless machines.") "/bind-" version ".tar.xz")) (sha256 (base32 - "1cv26gzbyk3ahidr1fip0pgj28s7l52cafdqpykfc1b2kh0zqixw")))) + "1hcr0q6i2mk83yi12zxjs5q21y3gx7683q99l77ibxfqsx6zc481")))) (build-system gnu-build-system) (outputs `("out" "utils")) (inputs diff --git a/gnu/packages/docbook.scm b/gnu/packages/docbook.scm index 236c7e2819..889bb96010 100644 --- a/gnu/packages/docbook.scm +++ b/gnu/packages/docbook.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2016 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Marius Bakke <marius@gnu.org> +;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -214,6 +215,168 @@ by no means limited to these applications.) This package provides XML DTDs.") "This package provides XSL style sheets for DocBook.") (license (x11-style "" "See 'COPYING' file.")))) +(define-public docbook-dsssl + (package + (name "docbook-dsssl") + (version "1.79") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/docbook/" + name "/" version "/" + name "-" version ".tar.bz2")) + (sha256 + (base32 + "1g72y2yyc2k89kzs0lvrb9n7hjayw1hdskfpplpz97pf1c99wcig")))) + (build-system trivial-build-system) + (outputs '("out" "doc")) + (arguments + `(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (dtd (string-append (assoc-ref %outputs "out") + "/sgml/dtd/docbook")) + (docbook-dsssl-doc (assoc-ref %build-inputs "docbook-dsssl-doc")) + (doc (assoc-ref %outputs "doc")) + (tar (assoc-ref %build-inputs "tar")) + (bzip2 (assoc-ref %build-inputs "bzip2"))) + (setenv "PATH" (string-append tar "/bin" ":" bzip2 "/bin")) + (mkdir-p dtd) + (invoke "tar" "-xf" source "-C" dtd) + ;; The doc output contains 1.4 MiB of HTML documentation. + (symlink docbook-dsssl-doc doc))))) + (inputs + `(("docbook-dsssl-doc" ,docbook-dsssl-doc))) + (native-inputs + `(("bzip2", bzip2) + ("tar" ,tar))) + (home-page "https://docbook.org/") + (synopsis "DSSSL style sheets for DocBook") + (description "This package provides DSSSL style sheets for DocBook.") + (license (non-copyleft "file://README")))) + +;;; Private variable, used as the 'doc' output of the docbook-dsssl package. +(define docbook-dsssl-doc + (package + (name "docbook-dsssl-doc") + (version "1.79") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/docbook/" + name "/" version "/" + name "-" version ".tar.bz2")) + (sha256 + (base32 + "1plp5ngc96pbna4rwglp9glcadnirbm3hlcjb4gjvq1f8biic9lz")))) + (build-system trivial-build-system) + (arguments + `(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (docdir (string-append (assoc-ref %outputs "out") + "/share/doc/" "docbook-dsssl-" ,version)) + (tar (assoc-ref %build-inputs "tar")) + (bzip2 (assoc-ref %build-inputs "bzip2"))) + (setenv "PATH" (string-append tar "/bin" ":" bzip2 "/bin")) + (mkdir-p docdir) + ;; Extract the "doc" subdirectory. + (invoke "tar" "-xf" source "--strip-components=2" + "--no-same-owner" "-C" docdir + (string-append "docbook-dsssl-" ,version "/doc")))))) + (native-inputs + `(("bzip2", bzip2) + ("tar" ,tar))) + (home-page "https://docbook.org/") + (synopsis "DocBook DSSSL style sheets documentation") + (description "Documentation for the DocBook DSSSL style sheets.") + (license (non-copyleft "file://doc/LEGALNOTICE.htm")))) + +(define-public docbook-sgml + (package + (name "docbook-sgml") + (version "4.1") + (source (origin + (method url-fetch) + (uri (string-append "https://www.oasis-open.org/docbook/sgml/" + version "/docbk41.zip")) + (sha256 + (base32 + "04b3gp4zkh9c5g9kvnywdkdfkcqx3kjc04j4mpkr4xk7lgqgrany")))) + (build-system trivial-build-system) + (arguments + '(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (iso-entities-dir (string-append + (assoc-ref %build-inputs "iso-8879-entities"))) + (unzip (string-append (assoc-ref %build-inputs "unzip") + "/bin/unzip")) + (dtd (string-append (assoc-ref %outputs "out") + "/sgml/dtd/docbook"))) + ;; Extract the sources. + (mkdir-p dtd) + (chdir dtd) + (invoke unzip source) + ;; Reference the ISO 8879 character entities. + ;; e.g. "iso-lat1.gml" --> "<iso-entities-dir>/ISOlat1" + (substitute* "docbook.cat" + (("(.*ISO 8879.*)\"iso-(.*)\\.gml\"" _ head name) + (string-append head "\"" iso-entities-dir "/ISO" name "\""))))))) + (native-inputs + `(("unzip" ,unzip))) + (inputs + `(("iso-8879-entities" ,iso-8879-entities))) + (home-page "https://docbook.org") + (synopsis "DocBook SGML style sheets for document authoring") + (description "This package provides SGML style sheets for DocBook.") + (license (x11-style "" "See file headers.")))) + +(define-public docbook-sgml-3.1 + (package + (inherit docbook-sgml) + (version "3.1") + (source (origin + (method url-fetch) + (uri (string-append "https://www.oasis-open.org/docbook/sgml/" + version "/docbk31.zip")) + (sha256 + (base32 + "0f25ch7bywwhdxb1qa0hl28mgq1blqdap3rxzamm585rf4kis9i0")))))) + +;;; Private package referenced by docbook-sgml. +(define iso-8879-entities + (package + (name "iso-8879-entities") + (version "0.0") ;no proper version + (source (origin + (method url-fetch) + (uri "http://www.oasis-open.org/cover/ISOEnts.zip") + (sha256 + (base32 + "1clrkaqnvc1ja4lj8blr0rdlphngkcda3snm7b9jzvcn76d3br6w")))) + (build-system trivial-build-system) + (arguments + '(#:modules ((guix build utils)) + #:builder + (begin + (use-modules (guix build utils)) + (let ((source (assoc-ref %build-inputs "source")) + (unzip (string-append (assoc-ref %build-inputs "unzip") + "/bin/unzip")) + (out (string-append (assoc-ref %outputs "out")))) + (invoke unzip source "-d" out))))) + (native-inputs `(("unzip" ,unzip))) + (home-page "https://www.oasis-open.org/") + (synopsis "ISO 8879 character entities") + (description "ISO 8879 character entities that are typically used in +the in DocBook SGML DTDs.") + (license (x11-style "" "See file headers.")))) + (define-public dblatex (package (name "dblatex") diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm index 07862291a7..13372489f5 100644 --- a/gnu/packages/education.scm +++ b/gnu/packages/education.scm @@ -2,8 +2,8 @@ ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2016, 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 Hartmut Goebel <h.goebel@crazy-compilers.com> -;;; Copyright © 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Robert Smith <robertsmith@posteo.net> ;;; Copyright © 2020 Guy Fleury Iteriteka <gfleury@disroot.org> @@ -230,8 +230,11 @@ Currently available boards include: (sha256 (base32 "0d387b404j88gsv6kv0rb7wxr23v5g5vl6s5l7602x8pxf7slbbx")) + ;; Apply patches in the order determined by Debian (patches (search-patches "tipp10-fix-compiling.patch" - "tipp10-remove-license-code.patch")))) + "tipp10-remove-license-code.patch" + "tipp10-disable-downloader.patch" + "tipp10-qt5.patch")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; packages has no tests @@ -256,8 +259,8 @@ Currently available boards include: ;; Recreate Makefile (invoke "qmake"))))))) (inputs - `(("qt4" ,qt-4) - ("sqlite" ,sqlite))) + `(("qtbase" ,qtbase) + ("qtmultimedia" ,qtmultimedia))) (home-page "https://www.tipp10.com/") (synopsis "Touch typing tutor") (description "Tipp10 is a touch typing tutor. The ingenious thing about @@ -677,15 +680,14 @@ language and very flexible regarding to new or unknown keyboard layouts.") (define-public ktouch (package (name "ktouch") - (version "20.12.0") + (version "20.12.1") (source (origin (method url-fetch) (uri (string-append "mirror://kde/stable/release-service/" version "/src/ktouch-" version ".tar.xz")) (sha256 - (base32 - "1s8pcwakx94aygfyjmyps5b43j4kv6dmfw7n12japcka2yfp9bi2")))) + (base32 "10lm2p8w26c9n6lhvw3301myfss0dq7hl7rawzb3hsy1lqvmvdib")))) (build-system qt-build-system) (arguments `(#:phases diff --git a/gnu/packages/efi.scm b/gnu/packages/efi.scm index 12cadd6036..11cfe586ac 100644 --- a/gnu/packages/efi.scm +++ b/gnu/packages/efi.scm @@ -1,7 +1,8 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2019 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> -;;; Copyright © 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2019–2021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -61,6 +62,44 @@ environment presented by Intel's EFI.") ;; Distribution is allowed only when accepting all those licenses. (license (list license:bsd-2 license:bsd-3 license:bsd-4 license:expat)))) +(define-public efi-analyzer + (let ((commit "77c9e3a67cd7c2fca48a4292dad25a5429872f95") + (revision "0")) + (package + (name "efi-analyzer") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xypron/efi_analyzer") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1izdkzybqyvzpzqz6kx4j7y47j6aa2dsdrychzgs65466x1a4br1")))) + (build-system gnu-build-system) + (arguments + `(#:make-flags + (list (string-append "prefix=" (assoc-ref %outputs "out"))) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'support-cross-compilation + (lambda _ + (substitute* "Makefile" + (("gcc") ,(cc-for-target))) + #t)) + (delete 'configure)))) ; no configure script + (home-page "https://github.com/xypron/efi_analyzer") + (synopsis "Analyze EFI binaries") + (description + "The EFI Analyzer checks EFI binaries and prints out header and section +information.") + (license license:bsd-2)))) + +(define-public efi_analyzer + ;; For a short while the package name contained an underscore. + (deprecated-package "efi_analyzer" efi-analyzer)) + (define-public sbsigntools (package (name "sbsigntools") diff --git a/gnu/packages/elf.scm b/gnu/packages/elf.scm index e5ce481fa8..2e21cab48d 100644 --- a/gnu/packages/elf.scm +++ b/gnu/packages/elf.scm @@ -122,14 +122,14 @@ object or archive file), @command{eu-strip} (for discarding symbols), (package (name "libabigail") (home-page "https://sourceware.org/libabigail/") - (version "1.7") + (version "1.8") (source (origin (method url-fetch) (uri (string-append "https://sourceware.org/pub/libabigail/" "libabigail-" version ".tar.gz")) (sha256 (base32 - "0bf8w01l6wm7mm4clfg5rqi30m1ws11qqa4bp2vxghfwgi9ai8i7")))) + "0p363mkgypcklgf8iylxpbdnfgqc086a6fv7n9hzrjjci45jdgqw")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--disable-static" diff --git a/gnu/packages/elixir.scm b/gnu/packages/elixir.scm index 8a2b6b302c..389b2bb29c 100644 --- a/gnu/packages/elixir.scm +++ b/gnu/packages/elixir.scm @@ -5,6 +5,7 @@ ;;; Copyright © 2017 nee <nee.git@cock.li> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Nikita <nikita@n0.is> +;;; Copyright © 2021 Oskar Köök <oskar@maatriks.ee> ;;; ;;; This file is part of GNU Guix. ;;; @@ -33,7 +34,7 @@ (define-public elixir (package (name "elixir") - (version "1.10.4") + (version "1.11.3") (source (origin (method git-fetch) @@ -42,7 +43,7 @@ (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "16j4rmm3ix088fvxhvyjqf1hnfg7wiwa87gml3b2mrwirdycbinv")) + (base32 "0ivah4117z75pinvb3gr22d05ihfwcdgw5zvvpv7kbgiqaj8ma8f")) (patches (search-patches "elixir-path-length.patch")))) (build-system gnu-build-system) (arguments diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index 81ae90ea31..9e276d9d26 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -31,7 +31,7 @@ ;;; Copyright © 2017 Peter Mikkelsen <petermikkelsen10@gmail.com> ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Mike Gerwitz <mtg@gnu.org> -;;; Copyright © 2017, 2018, 2019, 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2017, 2018, 2019, 2020, 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2018 Sohom Bhattacharjee <soham.bhattacharjee15@gmail.com> ;;; Copyright © 2018, 2019 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2018, 2019, 2020, 2021 Pierre Neidhardt <mail@ambrevar.xyz> @@ -41,7 +41,7 @@ ;;; Copyright © 2018 Alex Branham <alex.branham@gmail.com> ;;; Copyright © 2018 Thorsten Wilms <t_w_@freenet.de> ;;; Copyright © 2018, 2019, 2020 Pierre Langlois <pierre.langlois@gmx.com> -;;; Copyright © 2018, 2019, 2020 Brett Gilio <brettg@gnu.org> +;;; Copyright © 2018, 2019, 2020, 2021 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2019, 2020 Dimakakos Dimos <bendersteed@teknik.io> ;;; Copyright © 2019, 2020 Brian Leung <bkleung89@gmail.com> ;;; Copyright © 2019 mikadoZero <mikadozero@yandex.com> @@ -88,7 +88,8 @@ ;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; Copyright © 2020 André A. Gomes <andremegafone@gmail.com> ;;; Copyright © 2020 Jonathan Rostran <rostranjj@gmail.com> -;;; Copyright © 2020 Noah Evans <noah@nevans.me> +;;; Copyright © 2020, 2021 Noah Evans <noah@nevans.me> +;;; Copyright © 2020 Brit Butler <brit@kingcons.io> ;;; ;;; This file is part of GNU Guix. ;;; @@ -130,6 +131,7 @@ #:use-module (gnu packages databases) #:use-module (gnu packages dictionaries) #:use-module (gnu packages djvu) + #:use-module (gnu packages ebook) #:use-module (gnu packages emacs) #:use-module (gnu packages guile) #:use-module (gnu packages gtk) @@ -1844,6 +1846,34 @@ like. It can be linked with various Emacs mail clients (Message and Mail mode, Rmail, Gnus, MH-E, and VM). BBDB is fully customizable.") (license license:gpl3+))) +(define-public emacs-counsel-bbdb + (package + (name "emacs-counsel-bbdb") + (version "20181128.1320") + (source + (origin + (method url-fetch) + (uri (string-append "https://melpa.org/packages/counsel-bbdb-" + version ".el")) + (sha256 + (base32 + "03g3lk8hz9a17vf5r16x054bhyk8xsbnfq0div8ig13fmhqi159q")))) + (build-system emacs-build-system) + (propagated-inputs `(("emacs-ivy" ,emacs-ivy))) + (home-page "https://github.com/redguard/counsel-bbdb") + (synopsis "Ivy interface for BBDB") + (description "This Ivy extension enables the use of @code{ivy-mode} to input +email addresses from BBDB efficiently. The main functions are: +@table @code +@item counsel-bbdb-complete-mail to input email addresses; +@item counsel-bbdb-reload' to reload contacts from BBDB database; +@item counsel-bbdb-expand-mail-alias to expand mail alias. +@end table +Since @code{counsel-bbdb} is based on @code{ivy-mode}, all Ivy key bindings +are supported. For example, after @samp{C-u M-x counsel-bbdb-complete-mail}, +you can press @samp{C-M-n} to input multiple email addresses.") + (license license:gpl3+))) + (define-public emacs-bluetooth (package (name "emacs-bluetooth") @@ -2071,14 +2101,14 @@ as a library for other Emacs packages.") (define-public emacs-auctex (package (name "emacs-auctex") - (version "13.0.3") + (version "13.0.4") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "auctex-" version ".tar")) (sha256 - (base32 "1ljpkr0z15fyh907jbgky238dvci5vqi3xhvslyhblhp8sg9cbsi")))) + (base32 "1362dqb8mcaddda9849gqsj6rzlfq18xprddb74j02884xl7hq65")))) (build-system emacs-build-system) ;; We use 'emacs' because AUCTeX requires dbus at compile time ;; ('emacs-minimal' does not provide dbus). @@ -2253,7 +2283,7 @@ Lock key.") (define-public emacs-chronometrist (package (name "emacs-chronometrist") - (version "0.5.6") + (version "0.6.3") (source (origin (method git-fetch) @@ -2262,7 +2292,7 @@ Lock key.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0g54pxvid1hlynlnfx99sl027q2mr2f4axsvnf0vb3v48zm0n5cw")))) + (base32 "0ql72qh0bshv62nksv6awz5nqfhmgs8hkyvm7wvzfq64yrwghw50")))) (build-system emacs-build-system) (arguments `(#:phases @@ -4664,18 +4694,19 @@ for Flow files.") (define-public emacs-flycheck-grammalecte (package (name "emacs-flycheck-grammalecte") - (version "1.2") + (version "1.3") (source (origin - (method url-fetch) - (uri (string-append "https://git.deparis.io/" - "flycheck-grammalecte/snapshot/" - "flycheck-grammalecte-" version ".tar.xz")) + (method git-fetch) + (uri (git-reference + (url "https://git.umaneti.net/flycheck-grammalecte/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 - (base32 "1mzmzyik843r4j0ibpwqrxmb0g4xmirrf3lxr010bddkmmxf749a")))) + (base32 "1f1gapvs9j89qr474103dqgsiyb96phlnsmq5hiv4ba242blg9lb")))) (build-system emacs-build-system) (arguments - `(#:include '("\\.(el|py)$") + `(#:include (cons "\\.py$" %default-include) #:exclude '("^test-profile.el$") #:emacs ,emacs ;need libxml support #:phases @@ -4690,28 +4721,22 @@ for Flow files.") (substitute* '("conjugueur.py" "flycheck-grammalecte.py") (("/usr/bin/env python3?") python3)) #t))) - (add-before 'build 'link-to-grammalecte - ;; XXX: The Python part of the package requires grammalecte, but - ;; the library is not specified in PYTHONPATH, since we're not - ;; using Python build system. As a workaround, we symlink - ;; grammalecte libraries here. - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (grammalecte (assoc-ref inputs "grammalecte")) - (version ,(version-major+minor (package-version python)))) - (with-directory-excursion - (string-append out "/share/emacs/site-lisp") - (symlink (string-append grammalecte "/lib/" - "python" version "/site-packages/" - "grammalecte") - "grammalecte")) - #t)))))) + (add-after 'unpack 'specify-grammalecte-location + (lambda* (#:key inputs #:allow-other-keys) + (make-file-writable "flycheck-grammalecte.el") + (emacs-substitute-variables "flycheck-grammalecte.el" + ("flycheck-grammalecte--grammalecte-directory" + (string-append (assoc-ref inputs "grammalecte") + "/lib/python" + ,(version-major+minor (package-version python)) + "/site-packages/grammalecte"))) + #t))))) (inputs `(("grammalecte" ,grammalecte) ("python" ,python))) (propagated-inputs `(("emacs-flycheck" ,emacs-flycheck))) - (home-page "https://git.deparis.io/flycheck-grammalecte/") + (home-page "https://git.umaneti.net/flycheck-grammalecte/") (synopsis "Integrate Grammalecte with Flycheck") (description "Integrate the French grammar and typography checker Grammalecte with @@ -6344,6 +6369,57 @@ drill sessions to aid in memorization. In these sessions you are shown flash cards created in Org mode.") (license license:gpl3+))) +(define-public emacs-anki-editor + ;; Last release was in 2018. + (let ((commit "546774a453ef4617b1bcb0d1626e415c67cc88df") + (revision "0") + (version "0.3.3")) + (package + (name "emacs-anki-editor") + (version (git-version version revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/louietan/anki-editor") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1if610hq5j8rbjh1caw5bwbgnsn231awwxqbpwvrh966kdxzl4qf")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-dash" ,emacs-dash) + ("emacs-request" ,emacs-request))) + (home-page "https://github.com/louietan/anki-editor") + (synopsis "Minor mode for making Anki cards with Org mode") + (description + "This package is for people who use Anki as a spaced repetition system +(SRS) but would like to make cards in Org mode.") + (license license:gpl3+)))) + +(define-public emacs-org-mime + (package + (name "emacs-org-mime") + (version "0.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/org-mime/org-mime") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0vchyd80ybvr6317dwm50nxcgxfrpc0bz6259vnrh24p5sb8shbj")))) + (build-system emacs-build-system) + (home-page "http://github.com/org-mime/org-mime") + (synopsis "Send HTML email using Org mode HTML export") + (description + "This program sends HTML email using Org-mode HTML export. +This approximates a WYSiWYG HTML mail editor from within Emacs, and can be +useful for sending tables, fontified source code, and inline images in +email.") + (license license:gpl3+))) + (define-public emacs-org-superstar (package (name "emacs-org-superstar") @@ -6983,6 +7059,60 @@ any one of several ways: literally, as a regexp, as an initialism, in the flex style, or as multiple word prefixes.") (license license:gpl3+))) +(define-public emacs-consult + ;; There are no tagged releases upstream on GitHub, instead we are using the + ;; most recent commit. + (let ((commit "ef6bb73a4a46e686826968fa25169e2d59b9a087") + (revision "0")) + (package + (name "emacs-consult") + (version (git-version "0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/minad/consult") + (commit commit))) + (sha256 + (base32 "00cnwg2knd820wwx6zg71rr0whpdhqm64gm3qx1mgklk79g7daih")) + (file-name (git-file-name name version)))) + (build-system emacs-build-system) + (propagated-inputs `(("emacs-flycheck" ,emacs-flycheck) + ("emacs-selectrum" ,emacs-selectrum))) + (home-page "https://github.com/minad/consult") + (synopsis "Consulting completing-read") + (description "This package provides various handy commands based on the +Emacs completion function completing-read, which allows to quickly select from a +list of candidates.") + (license license:gpl3+)))) + +(define-public emacs-marginalia + ;; There are no tagged releases upstream on GitHub, instead we are using the + ;; most recent commit. + (let ((commit "401993562dbf636054dd64988e44d19b5030867f") + (revision "0")) + (package + (name "emacs-marginalia") + (version (git-version "0.1" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/minad/marginalia") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1j0k9ija5paidj7yvbagkkayz9bjwhia9yhmd2q4490ginbbxshs")))) + (build-system emacs-build-system) + (home-page "https://github.com/minad/marginalia") + (synopsis "Marginalia in the minibuffer") + (description + "This package provides Marginalia mode which adds marginalia to the +minibuffer completions. Marginalia are marks or annotations placed at the +margin of the page of a book or in this case helpful colorful annotations +placed at the margin of the minibuffer for your completion candidates.") + (license license:gpl3+)))) + (define-public emacs-smartparens (package (name "emacs-smartparens") @@ -9923,8 +10053,8 @@ extensions.") (license license:gpl3+))) (define-public emacs-evil-collection - (let ((commit "8c256263ad100fecd6246c6c55cbb19dab717c39") - (revision "18")) + (let ((commit "323bb7d85848a6a142ae14f39c3a073ce6423e20") + (revision "19")) (package (name "emacs-evil-collection") (version (git-version "0.0.3" revision commit)) @@ -9936,7 +10066,7 @@ extensions.") (file-name (git-file-name name version)) (sha256 (base32 - "0hz1yfv5g016dm99bwnibbmyhbi21qlc39ckd7p3s82az89hgf2n")))) + "1pf51kj93i1k2ivkjgwcvgxj8shrl8h7rkg578jl4k4awargf0nz")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-evil" ,emacs-evil) @@ -9976,9 +10106,9 @@ being deleted, changed, yanked, or pasted when using evil commands") (license license:gpl3+)))) (define-public emacs-goto-chg - (let ((commit "1829a13026c597e358f716d2c7793202458120b5") + (let ((commit "2af612153bc9f5bed135d25abe62f46ddaa9027f") (version "1.7.3") - (revision "1")) + (revision "2")) (package (name "emacs-goto-chg") (version (git-version version revision commit)) @@ -9991,10 +10121,8 @@ being deleted, changed, yanked, or pasted when using evil commands") (file-name (git-file-name name version)) (sha256 (base32 - "1y603maw9xwdj3qiarmf1bp13461f9f5ackzicsbynl0i9la3qki")))) + "1awmvihqgw6kspx192bcp9xp56xqbma90wlhxfxmidx3bvxghwpv")))) (build-system emacs-build-system) - (propagated-inputs - `(("emacs-undo-tree" ,emacs-undo-tree))) (home-page "https://github.com/emacs-evil/goto-chg") (synopsis "Go to the last change in the Emacs buffer") (description @@ -11575,14 +11703,14 @@ information via a consistent and well-integrated user interface.") (define-public emacs-adaptive-wrap (package (name "emacs-adaptive-wrap") - (version "0.7") + (version "0.8") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "adaptive-wrap-" version ".el")) (sha256 - (base32 "10fb8gzvkbnrgzv28n1rczs03dvapr7rvi0kd73j6yf1zg2iz6qp")))) + (base32 "1gs1pqzywvvw4prj63vpj8abh8h14pjky11xfl23pgpk9l3ldrb0")))) (build-system emacs-build-system) (home-page "https://elpa.gnu.org/packages/adaptive-wrap.html") (synopsis "Smart line-wrapping with wrap-prefix") @@ -12031,14 +12159,14 @@ and cangjie.") (define-public emacs-posframe (package (name "emacs-posframe") - (version "0.8.3") + (version "0.8.4") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" - "posframe-" version ".el")) + "posframe-" version ".tar")) (sha256 - (base32 "05m56aw2yxik0pgcvyr5c92j2mwfksxgq1syzvik6161gy8hdd0g")))) + (base32 "1sn35ibp5y4y80l1xm4b8i94ld953a9gbkk99zqd9mrq9bwjyhdp")))) (build-system emacs-build-system) ;; emacs-minimal does not include the function font-info. (arguments @@ -12766,6 +12894,29 @@ JSONRPC is a generic Remote Procedure Call protocol designed around JSON objects.") (license license:gpl3+))) +(define-public emacs-jsonnet-mode + (package + (name "emacs-jsonnet-mode") + (version "0.1.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/tminor/jsonnet-mode") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0vi7415n90d1z2ww1hld0gdp6v7z4rd6f70h476dp2x4hydk293i")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-dash" ,emacs-dash))) + (home-page "https://github.com/mgyucht/jsonnet-mode") + (synopsis "Major mode for editing jsonnet files") + (description "This package provides syntax highlighting, indenting, +formatting, and utility methods for jsonnet files.") + (license license:gpl3+))) + (define-public emacs-restclient (let ((commit "ac8aad6c6b9e9d918062fa3c89c22c2f4ec48bc3") (version "0") @@ -12879,8 +13030,8 @@ the actual transformations.") (license license:gpl2+)))) (define-public emacs-dired-hacks - (let ((commit "886befe113fae397407c804f72c45613d1d43535") - (revision "2")) + (let ((commit "d1a2bda6aa8f890cb367297ed93aee6d3b5ba388") + (revision "3")) (package (name "emacs-dired-hacks") (version (git-version "0.0.1" revision commit)) @@ -12892,7 +13043,7 @@ the actual transformations.") (file-name (git-file-name name version)) (sha256 (base32 - "1cvibg90ggyrivpjmcfprpi2fx7dpa68f8kzg08s88gw5ib75djl")))) + "12m81a9kjhs4cyq3lym0vp5nx6z3sfnypyzrnia76x6rjvixjf6y")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-dash" ,emacs-dash) @@ -13512,14 +13663,14 @@ database of references on life sciences.") (define-public emacs-websocket (package (name "emacs-websocket") - (version "1.13") + (version "1.13.1") (source (origin (method url-fetch) (uri (string-append "https://elpa.gnu.org/packages/" "websocket-" version ".tar")) (sha256 - (base32 "0jnarx53csmx5fivzp5vhvvj3m8s03zwc6hjl0spz5zb6icqclsa")))) + (base32 "1x664zswas0fpml7zaj59zy97avrm49zb80zd69rlkqzz1m45psc")))) (build-system emacs-build-system) (home-page "https://elpa.gnu.org/packages/websocket.html") (synopsis "Emacs WebSocket client and server") @@ -13667,6 +13818,36 @@ through them using @key{C-c C-SPC}.") messaging service.") (license license:gpl3+)))) +(define-public emacs-helm-slack + (let ((commit "465f6220f3f5bee4d95492991fca1290c89534eb") + (revision "1")) + (package + (name "emacs-helm-slack") + (version (git-version "0" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yuya373/helm-slack") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 + "0p1s1kl8v68qjprqkf034cz911qzbqxbscqgpn0c3mbm3yfx81f7")))) + (build-system emacs-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + ;; HOME needs to exist for source compilation. + (add-before 'build 'set-HOME + (lambda _ (setenv "HOME" "/tmp") #t))))) + (propagated-inputs `(("emacs-slack", emacs-slack))) + (home-page "https://github.com/yuya373/helm-slack") + (synopsis "Helm extension for emacs-slack") + (description "This package provides an helm extension for emacs-slack +Slack client.") + (license license:gpl3+)))) + + (define-public emacs-bash-completion (package (name "emacs-bash-completion") @@ -13949,7 +14130,7 @@ Features: (define-public emacs-evil-matchit (package (name "emacs-evil-matchit") - (version "2.3.9") + (version "2.3.10") (source (origin (method git-fetch) @@ -13958,7 +14139,7 @@ Features: (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1jk5qkqz3c4fnh6d2y889k5ycz8ipbkmzk4i8bl86xv9rhis1pv9")))) + (base32 "14nrc46290q54y7wv25251f2kqc0z8i9byl09xkgjijqldl9vdxa")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-evil" ,emacs-evil))) @@ -16073,6 +16254,32 @@ dumb text search, @code{elisp-refs} actually parses the code, so it's never confused by comments or @code{foo-bar} matching @code{foo}.") (license license:gpl3+))) +(define-public emacs-crdt + (let ((commit "44068ae505adf2c3a7bdbf6723a25fc45d6d1666") + (revision "0")) + (package + (name "emacs-crdt") + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://code.librehq.com/qhong/crdt.el") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "130fkhvi757pfnbz70g6nw2n71k89cwwx7yzvsd5v177228c8w7w")))) + (build-system emacs-build-system) + (home-page "https://code.librehq.com/qhong/crdt.el") + (synopsis "Real-time collaborative editing environment") + (description + "@code{crdt.el} is a real-time collaborative editing environment for +Emacs using Conflict-free Replicated Data Types. With it, you can share +multiple buffer in one session, and see other users’ cursor and region. It +also synchronizes Org mode folding status. It should work with all of Org +mode.") + (license license:gpl3+)))) + (define-public emacs-crux (let ((commit "308f17d914e2cd79cbc809de66d02b03ceb82859") (revision "2")) @@ -18134,16 +18341,16 @@ appropriate directory if no @code{eshell} session is active.") (define-public emacs-eshell-syntax-highlighting (package (name "emacs-eshell-syntax-highlighting") - (version "0.2") + (version "0.3") (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/akreisher/eshell-syntax-highlighting") - (commit version))) + (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0id27874wsb5y169030x8g1ldpa1mnskv1s2j3ygqiyh5fvpfash")))) + (base32 "1fb9aa85a3hx1rcmv71j6sc3y278452p1y4dabpwy07avb6apd0p")))) (build-system emacs-build-system) (home-page "https://github.com/akreisher/eshell-syntax-highlighting") (synopsis "Add syntax highlighting to Eshell") @@ -20083,7 +20290,7 @@ correctly.") (define-public emacs-helm-sly (package (name "emacs-helm-sly") - (version "0.5.1") + (version "0.7.0") (source (origin (method git-fetch) (uri (git-reference @@ -20092,7 +20299,7 @@ correctly.") (file-name (git-file-name name version)) (sha256 (base32 - "13s2dj09mcdwlibjlahyyq2dxjkjlpxs88dbdyvcd64249jmahsx")))) + "090vq8c4scf9byn8xic71b02n4c8frhz1y1x1brxn6iar44dmzm5")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-helm" ,emacs-helm) @@ -20957,6 +21164,25 @@ with emacs. It displays the output of the @code{repo status} command in a buffer and launches Magit from the status buffer for the project at point.") (license license:gpl3+))) +(define-public emacs-repology + (package + (name "emacs-repology") + (version "1.0.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://elpa.gnu.org/packages/" + "repology-" version ".tar")) + (sha256 + (base32 "0y12496wafx95izah8vvv1x86k1m8kysm5mlhvshkp0zbpvmb5iq")))) + (build-system emacs-build-system) + (home-page "https://elpa.gnu.org/packages/repology.html") + (synopsis "Repology API access via Elisp") + (description + "This package provides tools to query Repology API (see +@url{https://repology.org/api}), process results, and display them.") + (license license:gpl3+))) + (define-public emacs-alect-themes (package (name "emacs-alect-themes") @@ -22583,6 +22809,21 @@ through Dash docsets.") (sha256 (base32 "19gc05k2p1l8wlkrqij9cw6d61hzknd6a9n64kzlpi87cpbav3lv")))) (build-system emacs-build-system) + (arguments + '(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((calibre (assoc-ref inputs "calibre"))) + (make-file-writable "calibredb-core.el") + (emacs-substitute-variables "calibredb-core.el" + ("calibredb-program" + (string-append calibre "/bin/calibredb")) + ("calibredb-fetch-metadata-program" + (string-append calibre "/bin/fetch-ebook-metadata")))) + #t))))) + (inputs + `(("calibre" ,calibre))) (propagated-inputs `(("emacs-dash" ,emacs-dash) ("emacs-s" ,emacs-s) @@ -24902,7 +25143,7 @@ pattern guessed from thing under current cursor position. (define-public emacs-helm-selector (package (name "emacs-helm-selector") - (version "0.5") + (version "0.6.1") (home-page "https://github.com/emacs-helm/helm-selector") (source (origin @@ -24913,7 +25154,7 @@ pattern guessed from thing under current cursor position. (file-name (git-file-name name version)) (sha256 (base32 - "1cv659sqmrvk316fp7mjc58vvbcg1j6s2q4rwgqrpbyszrxl3i63")))) + "01lh1df0bnas1p7xlqc4i1jd67f8lxgq0q2zsvx10z8828i76j3v")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-helm" ,emacs-helm))) @@ -25761,7 +26002,7 @@ comments or emails.") (define-public emacs-trashed (package (name "emacs-trashed") - (version "1.9.0") + (version "2.1.2") (source (origin (method git-fetch) @@ -25770,7 +26011,7 @@ comments or emails.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "13grdi12iwlw4fiphdfmvclfpbr6ajlgfbfyi7v41z8k3rxz4ypz")))) + (base32 "0lfza55nbb62nmr27cwpcz2ad1vm95piq4nfd8zvkwqbn6klwmm6")))) (build-system emacs-build-system) (home-page "https://github.com/shingo256/trashed/") (synopsis "View and edit system trash can in Emacs") diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index 5166a4635c..baddaf1737 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -15,11 +15,11 @@ ;;; Copyright © 2019 Steve Sprang <scs@stevesprang.com> ;;; Copyright © 2019 John Soo <jsoo1@asu.edu> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> -;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> +;;; Copyright © 2020,2021 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Ekaitz Zarraga <ekaitz@elenq.tech> ;;; Copyright © 2020 B. Wilson <elaexuotee@wilsonb.com> -;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Morgan Smith <Morgan.J.Smith@outlook.com> ;;; ;;; This file is part of GNU Guix. @@ -1214,14 +1214,14 @@ use on a given system.") (define-public libredwg (package (name "libredwg") - (version "0.11.1") + (version "0.12") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/libredwg/libredwg-" version ".tar.xz")) (sha256 - (base32 "1xx6y6ckm4mzqln8y8lqf5frcn2b32ypc0d0h9dzpz6363zh7pdn")))) + (base32 "0z5algzi3alq166885y0qyj2gnc7gc6vhnz7nw0kwc0d236p6md8")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--disable-bindings"))) @@ -1524,7 +1524,7 @@ bindings for Python, Java, OCaml and more.") (define-public radare2 (package (name "radare2") - (version "4.4.0") + (version "5.0.0") (source (origin (method git-fetch) (uri (git-reference @@ -1532,7 +1532,7 @@ bindings for Python, Java, OCaml and more.") (commit version))) (sha256 (base32 - "0gwdnrnk7wdgkajp2qwg4fyplh7nsbmf01bzx07px6xmiscd9z2s")) + "0aa7c27kd0l55fy5qfvxqmakp4pz6240v3hn84095qmqkzcbs420")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments @@ -2367,7 +2367,7 @@ simulation.") (define-public cutter (package (name "cutter") - (version "1.10.3") + (version "1.12.0") (source (origin (method git-fetch) @@ -2376,7 +2376,7 @@ simulation.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0qj8jyij02nif4jpirl09ygwnv8a9zi3vkb5sf5s8mg7qwlpnvyk")))) + (base32 "0ljj3j3apbbw628n2nyrxpbnclixx20bqjxm0xwggqzz9vywsar0")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm index 99309dd4a0..d2769a4d76 100644 --- a/gnu/packages/enlightenment.scm +++ b/gnu/packages/enlightenment.scm @@ -198,7 +198,7 @@ removable devices or support for multimedia.") (define-public terminology (package (name "terminology") - (version "1.8.1") + (version "1.9.0") (source (origin (method url-fetch) (uri @@ -206,7 +206,7 @@ removable devices or support for multimedia.") "terminology/terminology-" version ".tar.xz")) (sha256 (base32 - "1fxqjf7g30ix4qxi6366rrax27s3maxq43z2vakwnhz4mp49m9h4")) + "0v74858yvrrfy0l2pq7yn6izvqhpkb9gw2jpd3a3khjwv8kw6frz")) (modules '((guix build utils))) ;; Remove the bundled fonts. (snippet @@ -217,10 +217,11 @@ removable devices or support for multimedia.") #t)))) (build-system meson-build-system) (arguments - `(#:configure-flags (list "-Dtests=true" - (string-append "-Dedje-cc=" - (assoc-ref %build-inputs "efl") - "/bin/edje_cc")) + `(#:configure-flags + (let ((efl (assoc-ref %build-inputs "efl"))) + (list "-Dtests=true" + (string-append "-Dedje-cc=" efl "/bin/edje_cc") + (string-append "-Deet=" efl "/bin/eet"))) #:phases (modify-phases %standard-phases (add-after 'unpack 'set-home-directory diff --git a/gnu/packages/erlang.scm b/gnu/packages/erlang.scm index 93569f3560..7b5dc70b5d 100644 --- a/gnu/packages/erlang.scm +++ b/gnu/packages/erlang.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2016, 2017 Pjotr Prins <pjotr.guix@thebird.nl> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Nikita <nikita@n0.is> +;;; Copyright © 2021 Oskar Köök <oskar@maatriks.ee> ;;; ;;; This file is part of GNU Guix. ;;; @@ -40,7 +41,7 @@ (define-public erlang (package (name "erlang") - (version "21.3.8.13") + (version "23.2.1") (source (origin (method git-fetch) ;; The tarball from http://erlang.org/download contains many @@ -52,7 +53,7 @@ (file-name (git-file-name name version)) (sha256 (base32 - "1dj37vk712dx76y25g13na24wbpn7a5ddmlpf4n51gm10sib54wj")) + "1p3lw4bcm2dph3pf1h4i0d9pzrcfr83r0iadqanxkwbmm1bl11pm")) (patches (search-patches "erlang-man-path.patch")))) (build-system gnu-build-system) (native-inputs @@ -68,7 +69,7 @@ (version-major+minor version) ".tar.gz")) (sha256 (base32 - "0wm1dg1psv1n3gpiwyms06yhsryrnr28p455fp0l1ak8hdf4nipm")))))) + "0rq0rw68f02vckgdiwmvx8bvyv00l81s27cq59i3h79j9prfal2n")))))) (inputs `(("ncurses" ,ncurses) ("openssl" ,openssl) @@ -180,6 +181,14 @@ (lambda _ (invoke "./otp_build" "autoconf") #t)) + (add-after 'autoconf 'patch-configure-script-shell + (lambda _ + (substitute* "configure" + (("cmd_str=\"./configure") + (string-append "cmd_str=\"" + (which "sh") + " ./configure"))) + #t)) (add-after 'install 'patch-erl ;; This only works after install. (lambda* (#:key outputs #:allow-other-keys) diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm index 2c5ad95d63..e6ee645be0 100644 --- a/gnu/packages/file-systems.scm +++ b/gnu/packages/file-systems.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com> ;;; Copyright © 2017, 2018 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2018 Leo Famulari <leo@famulari.name> -;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> ;;; Copyright © 2020 Morgan Smith <Morgan.J.Smith@outlook.com> ;;; Copyright © 2021 raid5atemyhoemwork <raid5atemyhomework@protonmail.com> @@ -847,7 +847,7 @@ APFS.") (define-public zfs (package (name "zfs") - (version "0.8.5") + (version "2.0.1") (outputs '("out" "module" "src")) (source (origin @@ -856,7 +856,7 @@ APFS.") "/download/zfs-" version "/zfs-" version ".tar.gz")) (sha256 - (base32 "0gfdnynmsxbhi97q73smrgmcw1k8zmlr1hgljfn38sk0kimivd6v")))) + (base32 "0y3992l4nzr67q18lz1kizw0za1shvqbpmsjz9shv4frh5ihllbi")))) (build-system linux-module-build-system) (arguments `(;; The ZFS kernel module should not be downloaded since the license @@ -885,19 +885,33 @@ APFS.") (let ((out (assoc-ref outputs "out")) (src (assoc-ref outputs "src")) (util-linux (assoc-ref inputs "util-linux")) - (nfs-utils (assoc-ref inputs "nfs-utils"))) + (nfs-utils (assoc-ref inputs "nfs-utils")) + (kmod (assoc-ref inputs "kmod-runtime"))) + (substitute* "etc/Makefile.in" + ;; This just contains an example configuration file for + ;; configuring ZFS on traditional init systems, skip it + ;; since we cannot use it anyway; the install target becomes + ;; misdirected. + (("= default ") "= ")) + (substitute* "lib/libzfs/os/linux/libzfs_util_os.c" + ;; Use path to /gnu/store/*-kmod in actual path that is exec'ed. + (("\"/sbin/modprobe\"") + (string-append "\"" kmod "/bin/modprobe" "\"")) + ;; Just use 'modprobe' in message to user, since Guix + ;; does not have a traditional /sbin/ + (("'/sbin/modprobe ") "'modprobe ")) (substitute* "contrib/Makefile.in" ;; This is not configurable nor is its hard-coded /usr prefix. ((" initramfs") "")) - (substitute* "module/zfs/zfs_ctldir.c" + (substitute* "module/os/linux/zfs/zfs_ctldir.c" (("/usr/bin/env\", \"umount") (string-append util-linux "/bin/umount\", \"-n")) (("/usr/bin/env\", \"mount") (string-append util-linux "/bin/mount\", \"-n"))) - (substitute* "lib/libzfs/libzfs_mount.c" + (substitute* "lib/libzfs/os/linux/libzfs_mount_os.c" (("/bin/mount") (string-append util-linux "/bin/mount")) (("/bin/umount") (string-append util-linux "/bin/umount"))) - (substitute* "lib/libshare/nfs.c" + (substitute* "lib/libshare/os/linux/nfs.c" (("/usr/sbin/exportfs") (string-append nfs-utils "/sbin/exportfs"))) (substitute* "config/zfs-build.m4" @@ -915,7 +929,9 @@ APFS.") (substitute* "contrib/pyzfs/Makefile.in" ((".*install-lib.*") "")) (substitute* '("Makefile.am" "Makefile.in") - (("\\$\\(prefix)/src") (string-append src "/src")))) + (("\\$\\(prefix)/src") (string-append src "/src"))) + (substitute* (find-files "udev/rules.d/" ".rules.in$") + (("/sbin/modprobe") (string-append kmod "/bin/modprobe")))) #t)) (replace 'build (lambda _ (invoke "make"))) @@ -939,6 +955,7 @@ APFS.") ("pkg-config" ,pkg-config))) (inputs `(("eudev" ,eudev) + ("kmod-runtime" ,kmod) ("libaio" ,libaio) ("libtirpc" ,libtirpc) ("nfs-utils" ,nfs-utils) @@ -1086,14 +1103,14 @@ Dropbox API v2.") (define-public dbxfs (package (name "dbxfs") - (version "1.0.48") + (version "1.0.50") (source (origin (method url-fetch) (uri (pypi-uri "dbxfs" version)) (sha256 (base32 - "07q7dgqaqqyapjl9r4lqydflrgx4dh84c1qsb0jvfmqj3i8887ak")) + "01zvk862ybz12270q0r2l1i7kdj30ib2gxrlxmwvi19b2fkf39na")) (patches (search-patches "dbxfs-remove-sentry-sdk.patch")))) (build-system python-build-system) (arguments diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm index e7d58bbcc0..8ead37beb3 100644 --- a/gnu/packages/finance.scm +++ b/gnu/packages/finance.scm @@ -1380,56 +1380,6 @@ following three utilities are included with the library: @end enumerate") (license license:gpl2+))) -(define-public opensp - (package - (name "opensp") - (version "1.5.2") - (source (origin - (method url-fetch) - (uri (string-append "mirror://sourceforge/openjade/opensp/" - version "/OpenSP-" version ".tar.gz")) - (sha256 - (base32 - "1khpasr6l0a8nfz6kcf3s81vgdab8fm2dj291n5r2s53k228kx2p")))) - (build-system gnu-build-system) - (native-inputs - `(("gettext" ,gettext-minimal))) - (inputs - `(("docbook-xml" ,docbook-xml-4.1.2) - ("docbook-xsl" ,docbook-xsl) - ("xmlto" ,xmlto))) - (arguments - `(;; TODO: Fix and enable tests. - #:tests? #f - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'patch-docbook-paths - (lambda* (#:key inputs #:allow-other-keys) - (let ((xmldoc (string-append (assoc-ref inputs "docbook-xml") - "/xml/dtd/docbook")) - (xsldoc (string-append (assoc-ref inputs "docbook-xsl") - "/xml/xsl/docbook-xsl-" - ,(package-version docbook-xsl)))) - (substitute* (find-files "docsrc" "\\.xml$") - (("/usr/share/sgml/docbook/xml-dtd-4.1.2") xmldoc) - (("http://.*/docbookx\\.dtd") - (string-append xmldoc "/docbookx.dtd"))) - ;; Directly pass the path to the stylesheet to xmlto. - (substitute* "docsrc/Makefile.in" - (("\\$\\(XMLTO\\)") - (string-append "$(XMLTO) -x " xsldoc - "/manpages/docbook.xsl"))) - #t)))))) - (home-page "http://openjade.sourceforge.net/") - (synopsis "Suite of SGML/XML processing tools") - (description "OpenSP is an object-oriented toolkit for SGML parsing and -entity management.") - (license - ;; expat license with added clause regarding advertising - (license:non-copyleft - "file://COPYING" - "See COPYING in the distribution.")))) - (define-public bitcoin-unlimited (package (name "bitcoin-unlimited") diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index d53583168e..be7a3cc181 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2013 John Darrington <jmd@gnu.org> ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org> ;;; Copyright © 2014, 2016 David Thompson <dthompson2@worcester.edu> -;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Eric Bavier <bavier@posteo.net> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Eric Bavier <bavier@posteo.net> ;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com> ;;; Copyright © 2014 Sylvain Beucler <beuc@beuc.net> ;;; Copyright © 2014, 2015, 2018, 2019 Ludovic Courtès <ludo@gnu.org> @@ -30,7 +30,7 @@ ;;; Copyright © 2017, 2019, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> -;;; Copyright © 2017, 2018, 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2017, 2018, 2019, 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 okapi <okapi@firemail.cc> ;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de> ;;; Copyright © 2018 Madalin Ionel-Patrascu <madalinionel.patrascu@mdc-berlin.de> @@ -1360,7 +1360,7 @@ does not include game data.") (package (inherit julius) (name "augustus") - (version "1.4.1a") + (version "2.0.1") (source (origin (method git-fetch) @@ -1369,7 +1369,7 @@ does not include game data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1xqv8j8jh3f13fjhyf7hk1anrn799cwwsvsd75kpl9n5yh5s1j5y")) + (base32 "0czazw8mc3fbvdazs2nzvgxd1dpzjc8z5fwiv89vv4nd7laz3jkj")) ;; Remove unused bundled libraries. (modules '((guix build utils))) (snippet @@ -2237,6 +2237,100 @@ and defeat them with your bubbles!") ;; GPL2+ is for code, CC0 is for art. (license (list license:gpl2+ license:cc0)))) +(define-public solarus + (package + (name "solarus") + ;; XXX: When updating this package, please also update hash in + ;; `solarus-quest-editor' below. + (version "1.6.4") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/solarus-games/solarus") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1n6l91yyqjx0pz4w1lp3yybpq0fs2yjswfcm8c1wjfkxwiznbdxi")))) + (build-system cmake-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'disable-failing-tests + ;; The following tests fail reporting a missing "/dev/dri" + ;; file. + (lambda _ + (substitute* "tests/cmake/AddTestMaps.cmake" + ((".*1200_create_shader_from_source.*" all) + (string-append "#" all)) + ((".*1210_shader_scaling_factor.*" all) + (string-append "#" all))) + #t)) + (add-before 'check 'set-home + ;; Tests fail without setting the following environment + ;; variables. + (lambda _ + (setenv "HOME" (getcwd)) + (setenv "XDG_RUNTIME_DIR" (getcwd)) + #t))))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("qttools" ,qttools))) + (inputs + `(("glm" ,glm) + ("libmodplug" ,libmodplug) + ("libogg" ,libogg) + ("libvorbis" ,libvorbis) + ("luajit" ,luajit) + ("openal" ,openal) + ("physfs" ,physfs) + ("qtbase" ,qtbase) + ("sdl2" ,(sdl-union (list sdl2 sdl2-image sdl2-ttf))))) + (home-page "https://www.solarus-games.org/") + (synopsis "Lightweight game engine for Action-RPGs") + (description + "Solarus is a 2D game engine written in C++, that can run games +scripted in Lua. It has been designed with 16-bit classic Action-RPGs +in mind.") + ;; The source code is licensed under the terms of GPL-3.0. + ;; Resources are licensed under the terms of CC-BY-SA-3.0 and + ;; CC-BY-SA 4.0. + (license (list license:gpl3 license:cc-by-sa3.0 license:cc-by-sa4.0)))) + +(define-public solarus-quest-editor + (package + (inherit solarus) + (name "solarus-quest-editor") + (version (package-version solarus)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/solarus-games/solarus-quest-editor") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1qbc2j9kalk7xqk9j27s7wnm5zawiyjs47xqkqphw683idmzmjzn")))) + (arguments + `(#:tests? #false ;no test + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-qt-build + ;; XXX: Fix build with Qt 5.15. It has been applied upstream as + ;; 81d5c7f1 and can be removed at next upgrade. + (lambda _ + (substitute* "src/entities/jumper.cpp" + (("#include <QPainter>" all) + (string-append all "\n" "#include <QPainterPath>\n"))) + #t))))) + (inputs + `(("solarus" ,solarus) + ,@(package-inputs solarus))) + (synopsis "Create and modify quests for the Solarus engine") + (description + "Solarus Quest Editor is a graphical user interface to create and +modify quests for the Solarus engine."))) + (define-public superstarfighter (package (name "superstarfighter") @@ -2365,6 +2459,93 @@ available, as well as a single-player mode with AI-controlled ships.") "$(call ZIP) -X")) #t)))) +(define-public trigger-rally + (package + (name "trigger-rally") + (version "0.6.6.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/trigger-rally/" + "trigger-" version "/" + "trigger-rally-" version ".tar.gz")) + (sha256 + (base32 + "016bc2hczqscfmngacim870hjcsmwl8r3aq8x03vpf22s49nw23z")))) + (build-system gnu-build-system) + (inputs + `(("freealut" ,freealut) + ("glew" ,glew) + ("glu" ,glu) + ("mesa" ,mesa) + ("openal" ,openal) + ("physfs" ,physfs) + ("sdl" ,(sdl-union (list sdl2 sdl2-image))) + ("tinyxml2" ,tinyxml2))) + (arguments + `(#:make-flags (list (string-append "prefix=" %output) + "bindir=$(prefix)/bin" + "datadir=$(datarootdir)" + "OPTIMS=-Ofast") + #:tests? #f ; No tests present + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-before 'build 'cd-src + (lambda _ (chdir "src"))) + (add-before 'build 'remove-timestamps + (lambda _ + (substitute* (list "Trigger/menu.cpp" + "PEngine/app.cpp") + ((".*__DATE__.*") "")))) + (add-before 'build 'make-verbose + (lambda _ + (substitute* "GNUmakefile" + (("@\\$\\(CXX\\)") "$(CXX)")))) + (add-after 'build 'set-data-path + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* "../bin/trigger-rally.config.defs" + (("<data path=\"C:[^\"]*\"") + (string-append "<data path=\"" out "/share/trigger-rally\"")))))) + (add-after 'install 'create-desktop-entry + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (apps (string-append out "/share/applications"))) + (mkdir-p apps) + (with-output-to-file + (string-append apps "/trigger-rally.desktop") + (lambda () + (format #t ; Borrowed from Debian package + "[Desktop Entry]~@ + Name=Trigger Rally~@ + Icon=trigger-rally~@ + Comment=3D rally racing car game~@ + Comment[de]=3D Rally-Autorennen~@ + Comment[fr_FR]=un jeu de rally en 3D~@ + Comment[ro_RO]=Un joc în 3D cu curse de raliu~@ + Exec=~a/bin/trigger-rally~@ + Terminal=false~@ + StartupNotify=false~@ + Type=Application~@ + TryExec=~:*~a/bin/trigger-rally~@ + Categories=Game;ArcadeGame;~@ + Keywords=racing;tracks;~@ + Keywords[de]=Rennstrecke;~%" + out))))))))) + (home-page "http://trigger-rally.sourceforge.net") + (synopsis "Fast-paced single-player racing game") + (description "Trigger-rally is a 3D rally simulation with great physics +for drifting on over 200 maps. Different terrain materials like dirt, +asphalt, sand, ice, etc. and various weather, light, and fog conditions give +this rally simulation the edge over many other games. You need to make it +through the maps in often tight time limits and can further improve by beating +the recorded high scores. All attached single races must be finished in time +in order to win an event, unlocking additional events and cars. Most maps are +equipped with spoken co-driver notes and co-driver icons.") + (license (list license:cc0 ;textures and audio in data.zip + license:gpl2+)))) + (define-public ufo2map (package (name "ufo2map") @@ -6196,31 +6377,15 @@ fish. The whole game is accompanied by quiet, comforting music.") (define-public crawl (package (name "crawl") - (version "0.25.0") + (version "0.26.0") (source (origin (method url-fetch) - (uri (list - ;; Older releases get moved into a versioned directory - (string-append "http://crawl.develz.org/release/" - (version-major+minor version) "/stone_soup-" - version "-nodeps.tar.xz") - ;; Only the latest release is in this directory - (string-append "http://crawl.develz.org/release/stone_soup-" - version "-nodeps.tar.xz"))) + (uri (string-append "https://github.com/crawl/crawl/releases/download/" + version "/stone_soup-" version "-nodeps.tar.xz")) (sha256 - (base32 "0rn1wjxdqw33caiwisfypm1j8cid3c9pz01ahicl17144zs29z3d")) - (patches (search-patches "crawl-upgrade-saves.patch")) - ;; The 0.25.0 -nodeps.tar.xz was built from an OSX machine; normally - ;; apparently it's built from a Debian machine before the Debian - ;; packages are made. These ._* files are binary and have the string - ;; "Mac OS X" in them... removing these seems to result in compilation - ;; again. - (modules '((guix build utils))) - (snippet - '(begin - (for-each delete-file (find-files "." "^\\._")) - #t)))) + (base32 "1m81x1sp6p2ka5w2nib3pcw5w5iv58z41c8aqn0dayi1lb3yslfb")) + (patches (search-patches "crawl-upgrade-saves.patch")))) (build-system gnu-build-system) (inputs `(("lua51" ,lua-5.1) diff --git a/gnu/packages/genimage.scm b/gnu/packages/genimage.scm index c9ed6258a0..bd77e4dc33 100644 --- a/gnu/packages/genimage.scm +++ b/gnu/packages/genimage.scm @@ -1,5 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018 Danny Milosavljevic <dannym@scratchpost.org> +;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -47,7 +48,7 @@ (uri (git-reference (url "https://github.com/pengutronix/genimage") (commit (string-append "v" version)))) - (file-name (string-append name "-" version "-checkout")) + (file-name (git-file-name name version)) (sha256 (base32 "15jmh17lvm3jw9c92bjarly7iwhmnfl322d91mprfv10ppb9ip54")) diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index 2612347913..e378474147 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -770,7 +770,7 @@ OpenGL.") (define-public glfw (package (name "glfw") - (version "3.2.1") + (version "3.3.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/glfw/glfw" @@ -778,7 +778,7 @@ OpenGL.") "/glfw-" version ".zip")) (sha256 (base32 - "09kk5yc1zhss9add8ryqrngrr16hdmc94rszgng135bhw09mxmdp")))) + "1izgc4r0ypxwwklfzj98ab4xqsjpb1wbsfdbivvxpmr95x8km8q8")))) (build-system cmake-build-system) (arguments '(#:tests? #f ; no test target @@ -792,6 +792,7 @@ OpenGL.") ;; These are in 'Requires.private' of 'glfw3.pc'. ("libx11" ,libx11) ("libxrandr" ,libxrandr) + ("libxi" ,libxi) ("libxinerama" ,libxinerama) ("libxcursor" ,libxcursor) ("libxxf86vm" ,libxxf86vm))) diff --git a/gnu/packages/gnome-xyz.scm b/gnu/packages/gnome-xyz.scm index 1204dcee90..eb99fda78e 100644 --- a/gnu/packages/gnome-xyz.scm +++ b/gnu/packages/gnome-xyz.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2019, 2020, 2021 Leo Prikler <leo.prikler@student.tugraz.at> -;;; Copyright © 2019 Alexandros Theodotou <alex@zrythm.org> +;;; Copyright © 2019, 2021 Alexandros Theodotou <alex@zrythm.org> ;;; Copyright © 2019 Giacomo Leidi <goodoldpaul@autistici.org> ;;; Copyright © 2020 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2020 Jack Hill <jackhill@jackhill.us> @@ -779,6 +779,55 @@ dark elements. It supports GNOME, Unity, Xfce, and Openbox.") (define-public numix-theme (deprecated-package "numix-theme" numix-gtk-theme)) +(define-public markets + (package + (name "markets") + (version "0.4.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/bitstower/markets") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1jzv74l2jkdiqy1hp0ww5yla50dmrvjw7fgkmb26ynblr1nb3rrb")))) + (build-system meson-build-system) + (arguments + `(#:glib-or-gtk? #t + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'skip-gtk-update-icon-cache + ;; Don't create 'icon-theme.cache'. + (lambda _ + (substitute* "build-aux/meson/postinstall.py" + (("gtk-update-icon-cache") "true")) + #t)) + (add-after 'unpack 'skip-update-desktop-database + ;; Don't update desktop file database. + (lambda _ + (substitute* "build-aux/meson/postinstall.py" + (("update-desktop-database") "true")) + #t))))) + (inputs + `(("gtk3" ,gtk+) + ("gettext" ,gettext-minimal) + ("libgee" ,libgee) + ("libhandy0" ,libhandy-0.0) + ("libsoup" ,libsoup) + ("json-glib" ,json-glib) + ("vala" ,vala))) + (native-inputs + `(("pkg-config" ,pkg-config) + ("glib" ,glib "bin"))) ; for 'glib-compile-resources' + (home-page "https://github.com/bitstower/markets") + (synopsis "Stock, currency and cryptocurrency tracker") + (description + "Markets is a GTK application that displays financial data, helping users +track stocks, currencies and cryptocurrencies.") + (license license:gpl3))) + (define-public vala-language-server (package (name "vala-language-server") diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 3399b5ae7d..fd7a82da69 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -51,7 +51,7 @@ ;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Naga Malleswari <nagamalli@riseup.net> ;;; Copyright © 2020 Ryan Prior <rprior@protonmail.com> -;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> +;;; Copyright © 2020, 2021 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> ;;; Copyright © 2020 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> @@ -2252,6 +2252,16 @@ and keep up to date translations of documentation.") (lambda _ (substitute* "meson-postinstall.sh" (("update-desktop-database") (which "true"))) + #t)) + (add-after 'install 'patch-thumbnailer + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out"))) + (substitute* + (string-append + out + "/share/thumbnailers/gnome-font-viewer.thumbnailer") + (("gnome-thumbnail-font") + (string-append out "/bin/gnome-thumbnail-font")))) #t))))) (native-inputs `(("gettext" ,gettext-minimal) @@ -2841,7 +2851,7 @@ database is translated at Transifex.") (define-public system-config-printer (package (name "system-config-printer") - (version "1.5.14") + (version "1.5.15") (source (origin (method url-fetch) @@ -2850,7 +2860,7 @@ database is translated at Transifex.") "download/v" version "/system-config-printer-" version ".tar.xz")) (sha256 - (base32 "1l79lj44kl079sk308m42x3py1yvcxk5x5bs2vqfmqv26zm8qyqf")))) + (base32 "12d6xx51vizc476zfnsga9q09nflp51ipn6y7lhi9w2v4772dlpv")))) (build-system glib-or-gtk-build-system) (arguments `(#:imported-modules ((guix build python-build-system) @@ -6514,14 +6524,14 @@ almost all of them.") (define-public eolie (package (name "eolie") - (version "0.9.100") + (version "0.9.101") (source (origin (method url-fetch) (uri (string-append "https://adishatz.org/eolie/eolie-" version ".tar.xz")) (sha256 (base32 - "1vzhfp8j1z3jvd5ndqfyn7nqrx3zdvx9mv1byjl36nnd9g63ji62")))) + "1v8n21y75abdzsnx5idyd0q6yfb6cd0sqbknlbkwh5fdgvjzyvwn")))) (build-system meson-build-system) (arguments `(#:glib-or-gtk? #t @@ -10799,13 +10809,13 @@ advanced image management tool") (synopsis "Store and run multiple GNOME terminals in one window") (description "Terminator allows you to run multiple GNOME terminals in a grid and -+tabs, and it supports drag and drop re-ordering of terminals.") +tabs, and it supports drag and drop re-ordering of terminals.") (license license:gpl2))) (define-public libhandy (package (name "libhandy") - (version "1.0.2") + (version "1.0.3") (source (origin (method git-fetch) @@ -10814,7 +10824,7 @@ advanced image management tool") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1bmmkahshvlvpsnb7zp8bddv7i1h5k4p967n6kxh71g1vnj8x20m")))) + (base32 "0flgwlm921801i3ns0dwqpnxl89f3rzn4y9h723i13bmflch3in7")))) (build-system meson-build-system) (arguments `(#:configure-flags @@ -11398,7 +11408,7 @@ and toolbars.") (define-public setzer (package (name "setzer") - (version "0.3.8") + (version "0.3.9") (source (origin (method git-fetch) @@ -11407,7 +11417,7 @@ and toolbars.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "1f5qmkz4hzn54sh56z3hw8zrvg93xlz62ggzlzyg7vgsr83kpns9")))) + (base32 "1qmy2bxl8x6pijjaaj91v6rqdipha6iyy0b6b9y1lk3r2p3azd42")))) (build-system meson-build-system) (arguments `(#:glib-or-gtk? #t @@ -11832,7 +11842,7 @@ integrated profiler via Sysprof, debugging support, and more.") (define-public komikku (package (name "komikku") - (version "0.24.0") + (version "0.25.1") (source (origin (method git-fetch) @@ -11842,7 +11852,7 @@ integrated profiler via Sysprof, debugging support, and more.") (file-name (git-file-name name version)) (sha256 (base32 - "010p32zrim245y0l784yp0rasqcqlyr3lrxwl3r1876x83qhs6q3")))) + "03skci66y9qqiv4bqbbc0w6d6agilwmx95cw7sribj06zcykm7m3")))) (build-system meson-build-system) (arguments `(#:glib-or-gtk? #t diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index 3620efea3a..a2da166bb4 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -13,10 +13,11 @@ ;;; Copyright © 2016 Troy Sankey <sankeytms@gmail.com> ;;; Copyright © 2017, 2020 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Petter <petter@mykolab.ch> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018, 2019 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2018 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> +;;; Copyright © 2020 Fredrik Salomonsson <plattfot@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -67,6 +68,7 @@ #:use-module (gnu packages tor) #:use-module (gnu packages web) #:use-module (gnu packages xorg) + #:use-module (gnu packages xdisorg) #:use-module (gnu packages xml) #:use-module (guix packages) #:use-module (guix download) @@ -355,13 +357,13 @@ libskba (working with X.509 certificates and CMS data).") (define-public gpgme (package (name "gpgme") - (version "1.15.0") + (version "1.15.1") (source (origin (method url-fetch) (uri (string-append "mirror://gnupg/gpgme/gpgme-" version ".tar.bz2")) (sha256 - (base32 "0nqfipv5s4npfidsm1rs3kpq0r0av9bfqfd5r035jibx5k0jniqb")))) + (base32 "1bg13l5s8x9p1v0jyv29n84bay27pflindpzjsc9gj7i4wdkrg7f")))) (build-system gnu-build-system) (native-inputs `(("gnupg" ,gnupg))) @@ -892,6 +894,77 @@ passphrase when @code{gpg} is run and needs it."))) @dfn{Enlightenment Foundation Libraries} (EFL) that allows users to enter a passphrase when @code{gpg} is run and needs it."))) +(define-public pinentry-rofi + (package + (name "pinentry-rofi") + (version "2.0.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/plattfot/pinentry-rofi/") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "044bnldz7k74s873jwsjgff176l1jsvpbaka7d1wcj8b5pwqv2av")))) + (build-system gnu-build-system) + (arguments + `(#:modules + ((ice-9 match) + (ice-9 ftw) + ,@%gnu-build-system-modules) + #:phases + (modify-phases + %standard-phases + (add-after 'install 'hall-wrap-binaries + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((compiled-dir + (lambda (out version) + (string-append out "/lib/guile/" version "/site-ccache"))) + (uncompiled-dir + (lambda (out version) + (string-append + out + "/share/guile/site" + (if (string-null? version) "" "/") + version))) + (dep-path + (lambda (env path) + (list env ":" 'prefix (list path)))) + (out (assoc-ref outputs "out")) + (bin (string-append out "/bin/")) + (site (uncompiled-dir out ""))) + (match (scandir site) + (("." ".." version) + (for-each + (lambda (file) + (wrap-program + (string-append bin file) + (dep-path + "PATH" + (string-append (assoc-ref inputs "rofi") "/bin")) + (dep-path + "GUILE_LOAD_PATH" + (uncompiled-dir out version)) + (dep-path + "GUILE_LOAD_COMPILED_PATH" + (compiled-dir out version)))) + ,''("pinentry-rofi")) + #t)))))))) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("pkg-config" ,pkg-config) + ("texinfo" ,texinfo))) + (inputs `(("guile" ,guile-3.0) + ("rofi" ,rofi))) + (synopsis "Rofi GUI for GnuPG's passphrase input") + (description "Pinentry-rofi is a simple graphical user interface for +passphrase or PIN when required by @code{gpg} or other software. It is using +the Rofi application launcher as the user interface. Which makes it combined +with @code{rofi-pass} a good front end for @code{password-store}.") + (home-page "https://github.com/plattfot/pinentry-rofi/") + (license license:gpl3+))) + (define-public pinentry (package (inherit pinentry-gtk2) (name "pinentry"))) diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index cead17b204..85b27dd503 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -1305,11 +1305,11 @@ standards of the IceCat project.") (cpe-version . ,(first (string-split version #\-))))))) ;; Update this together with icecat! -(define %icedove-build-id "20201215000000") ;must be of the form YYYYMMDDhhmmss +(define %icedove-build-id "20210111000000") ;must be of the form YYYYMMDDhhmmss (define-public icedove (package (name "icedove") - (version "78.6.0") + (version "78.6.1") (source icecat-source) (properties `((cpe-name . "thunderbird_esr"))) @@ -1589,7 +1589,7 @@ standards of the IceCat project.") ;; in the Thunderbird release tarball. We don't use the release ;; tarball because it duplicates the Icecat sources and only adds the ;; "comm" directory, which is provided by this repository. - ,(let ((changeset "18be92a3f0388fe1b69941a50cdbadbf2c95b885")) + ,(let ((changeset "f99e82f3f3cae6af48006c39fceb3beeabccd6f6")) (origin (method hg-fetch) (uri (hg-reference @@ -1598,7 +1598,7 @@ standards of the IceCat project.") (file-name (string-append "thunderbird-" version "-checkout")) (sha256 (base32 - "1w21g19l93bcna20260cgxjsh17pznd3kdfvyrn23wjkslgpbyi3"))))) + "0mrar1qsvvlcggzz54nxi70jzk19mq42585905kb5n90ikr9q2q7"))))) ("autoconf" ,autoconf-2.13) ("cargo" ,rust-1.41 "cargo") ("clang" ,clang) diff --git a/gnu/packages/gps.scm b/gnu/packages/gps.scm index 4fa3bcef19..ca53ac3b73 100644 --- a/gnu/packages/gps.scm +++ b/gnu/packages/gps.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014, 2015 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Guillaume Le Vaillant <glv@posteo.net> @@ -149,7 +149,7 @@ between two other data points.") (define-public gama (package (name "gama") - (version "2.12") + (version "2.13") (source (origin (method url-fetch) @@ -157,7 +157,7 @@ between two other data points.") version ".tar.gz")) (sha256 (base32 - "0zfilasalsy29b7viw0iwgnl9bkvp0l87gpxl1hx7379l8agwqyj")) + "041cprbj4lfs42i7sd1c2zlx3r16g6c5shz3qls79gxb7kqflkgb")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/graphics.scm b/gnu/packages/graphics.scm index 9879130e20..411d89fcc2 100644 --- a/gnu/packages/graphics.scm +++ b/gnu/packages/graphics.scm @@ -23,6 +23,7 @@ ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Gabriel Arazas <foo.dogsquared@gmail.com> +;;; Copyright © 2021 Antoine Côté <antoine.cote@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -428,17 +429,47 @@ with the @command{autotrace} utility or as a C library, @code{libautotrace}.") (license (list license:gpl2+ ;for the utility itself license:lgpl2.1+))))) ;for use as a library +(define-public embree + (package + (name "embree") + (version "3.12.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/embree/embree") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0aznd16n7h8g3f6jcahzfp1dq4r7wayqvn03wsaskiq2dvsi4srd")))) + (build-system cmake-build-system) + (arguments + `(#:tests? #f ; no tests (apparently) + #:configure-flags + (list + "-DEMBREE_ISPC_SUPPORT=OFF"))) + (inputs + `(("tbb" ,tbb) + ("glfw" ,glfw))) + (home-page "https://www.embree.org/") + (synopsis "High performance ray tracing kernels") + (description + "Embree is a collection of high-performance ray tracing kernels. +Embree is meant to increase performance of photo-realistic rendering +applications.") + (license license:asl2.0))) + (define-public blender (package (name "blender") - (version "2.83.9") + (version "2.91.0") (source (origin (method url-fetch) (uri (string-append "https://download.blender.org/source/" "blender-" version ".tar.xz")) (sha256 (base32 - "106w9vi6z0gi2nbr73g8pm40w3wn7dkjcibzvvzbc786yrnzvkhb")))) + "0x396lgmk0dq9115yrc36s8zwxzmjr490sr5n2y6w27y17yllyjm")))) (build-system cmake-build-system) (arguments (let ((python-version (version-major+minor (package-version python)))) @@ -510,7 +541,8 @@ with the @command{autotrace} utility or as a C library, @code{libautotrace}.") ("python" ,python) ("python-numpy" ,python-numpy) ("tbb" ,tbb) - ("zlib" ,zlib))) + ("zlib" ,zlib) + ("embree" ,embree))) (home-page "https://blender.org/") (synopsis "3D graphics creation suite") (description @@ -588,6 +620,7 @@ application can be customized via its API for Python scripting.") `(("boost" ,boost) ("jemalloc" ,jemalloc) ("libx11" ,libx11) + ("opencolorio" ,opencolorio) ("openimageio" ,openimageio) ("openexr" ,openexr) ("ilmbase" ,ilmbase) diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index c5eaa8a2ca..c2d853f006 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -82,6 +82,7 @@ #:use-module (gnu packages linux) #:use-module (gnu packages man) #:use-module (gnu packages maths) + #:use-module (gnu packages mes) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) #:use-module (gnu packages networking) @@ -101,6 +102,7 @@ #:use-module (gnu packages texinfo) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) + #:use-module (gnu packages web) #:use-module (gnu packages webkit) #:use-module (gnu packages xdisorg) #:use-module (gnu packages xorg) @@ -2570,8 +2572,8 @@ format is also supported.") (deprecated-package "guile3.0-mcron" mcron)) (define-public guile-picture-language - (let ((commit "7e5982a2788bd79a45ad6f02db46f061f97b6e14") - (revision "3")) + (let ((commit "291a746a1d3b4784d38b05239bdd7b8e796ce761") + (revision "4")) (package (name "guile-picture-language") (version (git-version "0.0.1" revision commit)) @@ -2583,12 +2585,13 @@ format is also supported.") (file-name (git-file-name name version)) (sha256 (base32 - "1y5f14cll4jx33hr43dpgrpd0yy6g0g7lim365kmgb0h0cvja80p")))) + "0rnhf13ds92sbdicshy4sy4kl2kc431fy9vzm1divw974p7v57sd")))) (build-system gnu-build-system) (inputs `(("guile" ,guile-3.0))) (propagated-inputs - `(("guile-rsvg" ,guile-rsvg))) + `(("guile-cairo" ,guile-cairo) + ("guile-rsvg" ,guile-rsvg))) (native-inputs `(("autoconf" ,autoconf) ("automake" ,automake) @@ -4429,6 +4432,74 @@ including parsing and code generation.") "Guile Shapefile is a Guile library for reading shapefiles.") (license license:expat))) +(define-public guile-libyaml + (let ((commit "f5d33a6880e96571d3cb079ed7755ffc156cac46") + (revision "1")) + (package + (name "guile-libyaml") + (version (git-version "0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mwette/guile-libyaml") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "12x91983fh1j39zy7kbk19acc1rqdh8515ddx1mh7l26j04k9wgq")))) + (build-system gnu-build-system) + (arguments + `(#:modules (((guix build guile-build-system) + #:prefix guile:) + ,@%gnu-build-system-modules) + #:imported-modules ((guix build guile-build-system) + ,@%gnu-build-system-modules) + #:tests? #false ; there are none + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'remove-unused-files + (lambda* (#:key inputs #:allow-other-keys) + (for-each delete-file + '("guix.scm" "demo1.yml" "demo1.scm" + "yaml/libyaml.scm" + ;; This file is mismatched with the generated FFI code. + "yaml/ffi-help-rt.scm")) + (copy-file (string-append (assoc-ref inputs "nyacc") + "/share/guile/site/3.0/system/ffi-help-rt.scm") + "yaml/ffi-help-rt.scm") + (substitute* "yaml/ffi-help-rt.scm" + (("system ffi-help-rt") "yaml ffi-help-rt")) + #true)) + (add-before 'build 'build-ffi + (lambda* (#:key inputs #:allow-other-keys) + (invoke "guild" "compile-ffi" + "--no-exec" ; allow us to patch the generated file + "yaml/libyaml.ffi") + (substitute* "yaml/libyaml.scm" + (("system ffi-help-rt") "yaml ffi-help-rt") + (("dynamic-link \"libyaml\"") + (format #false "dynamic-link \"~a/lib/libyaml\"" + (assoc-ref inputs "libyaml")))) + #true)) + (replace 'build + (assoc-ref guile:%standard-phases 'build)) + (delete 'install)))) + (inputs + `(("guile" ,guile-3.0) + ("libyaml" ,libyaml))) + (propagated-inputs + `(("guile-bytestructures" ,guile-bytestructures))) + (native-inputs + `(("nyacc" ,nyacc))) + (home-page "https://github.com/mwette/guile-libyaml") + (synopsis "Guile wrapper for libyaml") + (description + "This package provides a simple yaml module for Guile using the +ffi-helper from nyacc.") + (license license:lgpl3+)))) + (define-public schmutz (let ((commit "add24588c59552537b8f1316df99a0cdd62c221e") (revision "1")) diff --git a/gnu/packages/guile.scm b/gnu/packages/guile.scm index 1c983e50eb..0d6f13c97f 100644 --- a/gnu/packages/guile.scm +++ b/gnu/packages/guile.scm @@ -310,16 +310,19 @@ without requiring the source code to be rewritten.") (define-public guile-3.0-latest ;; TODO: Make this 'guile-3.0' on the next rebuild cycle. - (package - (inherit guile-3.0) - (version "3.0.5") - (source (origin - (inherit (package-source guile-3.0)) - (uri (string-append "mirror://gnu/guile/guile-" - version ".tar.xz")) - (sha256 - (base32 - "1wah6fq1h8vmbpdadjych1mq8hyqkd7p015cbxm14ri37l1gnxid")))))) + (package-with-extra-patches + (package + (inherit guile-3.0) + (version "3.0.5") + (source (origin + (inherit (package-source guile-3.0)) + (uri (string-append "mirror://gnu/guile/guile-" + version ".tar.xz")) + (sha256 + (base32 + "1wah6fq1h8vmbpdadjych1mq8hyqkd7p015cbxm14ri37l1gnxid"))))) + ;; Remove on the next rebuild cycle. + (search-patches "guile-2.2-skip-so-test.patch"))) (define-public guile-next (deprecated-package "guile-next" guile-3.0)) @@ -578,14 +581,14 @@ specification. These are the main features: (package (inherit guile-json-3) (name "guile-json") - (version "4.4.1") + (version "4.5.1") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/guile-json/guile-json-" version ".tar.gz")) (sha256 (base32 - "1xq4f59rdk28xy4sdn6amy07aa19ikrk48iily3kfhwpkbg6v9jj")))))) + "0iigada80cg7dl10z6ligiykci0cv9b88zmncz47nsz5g9gacdpc")))))) (define-public guile2.2-json (package-for-guile-2.2 guile-json-4)) diff --git a/gnu/packages/idris.scm b/gnu/packages/idris.scm index 1982d7cf07..ca2772b904 100644 --- a/gnu/packages/idris.scm +++ b/gnu/packages/idris.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org> ;;; Copyright © 2016, 2017 David Craven <david@craven.ch> ;;; Copyright © 2018 Alex ter Weele <alex.ter.weele@gmail.com> -;;; Copyright © 2019 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2019, 2021 Eric Bavier <bavier@posteo.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -38,7 +38,7 @@ (define-public idris (package (name "idris") - (version "1.3.2") + (version "1.3.3") (source (origin (method url-fetch) (uri (string-append @@ -46,10 +46,12 @@ "idris-" version "/idris-" version ".tar.gz")) (sha256 (base32 - "0wychzkg0yghd2pp8fqz78vp1ayzks191knfpl7mhh8igsmb6bc7")))) + "1pachwc6msw3n1mz2z1r1w6h518w9gbhdvbaa5vi1qp3cn3wm6q4")) + (patches (search-patches "idris-disable-test.patch")))) (build-system haskell-build-system) (native-inputs ;For tests `(("perl" ,perl) + ("ghc-cheapskate" ,ghc-cheapskate) ("ghc-tasty" ,ghc-tasty) ("ghc-tasty-golden" ,ghc-tasty-golden) ("ghc-tasty-rerun" ,ghc-tasty-rerun))) @@ -98,7 +100,8 @@ (add-after 'unpack 'update-constraints (lambda _ (substitute* "idris.cabal" - (("ansi-terminal < 0\\.9") "ansi-terminal < 0.10")) + (("ansi-terminal < 0\\.9") "ansi-terminal < 0.10") + (("cheapskate >= 0\\.1\\.1\\.2 && < 0\\.2") "cheapskate >= 0.1.1.1 && < 0.2")) #t)) (add-before 'configure 'set-cc-command (lambda _ @@ -118,6 +121,7 @@ (add-after 'install 'check (lambda* (#:key outputs #:allow-other-keys #:rest args) (let ((out (assoc-ref outputs "out"))) + (chmod "test/scripts/timeout" #o755) ;must be executable (setenv "TASTY_NUM_THREADS" (number->string (parallel-job-count))) (setenv "IDRIS_CC" "gcc") ;Needed for creating executables (setenv "PATH" (string-append out "/bin:" (getenv "PATH"))) diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm index dfe29d413e..fda9e4cb7b 100644 --- a/gnu/packages/image-viewers.scm +++ b/gnu/packages/image-viewers.scm @@ -296,7 +296,7 @@ your images. Among its features are: (define-public catimg (package (name "catimg") - (version "2.6.0") + (version "2.7.0") (source (origin (method git-fetch) @@ -305,7 +305,7 @@ your images. Among its features are: (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0g9ywbgy162wiam9hc3yqpq5q4gyxa8fj4jskr3fdz8z8jjaabzz")))) + (base32 "0a2dswbv4xddb2l2d55hc43lzvjwrjs5z9am7v6i0p0mi2fmc89s")))) (build-system cmake-build-system) (arguments `(#:tests? #f ; no tests diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 86e30f991f..339bd7dcf2 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -1218,7 +1218,9 @@ processing and analysis library that puts its main emphasis on customizable algorithms and data structures. It is particularly strong for multi-dimensional image processing.") (license license:expat) - (home-page "https://ukoethe.github.io/vigra/"))) + (home-page "https://ukoethe.github.io/vigra/") + (properties '((max-silent-time . 7200))))) ;2 hours, to avoid timing out + (define-public vigra-c (let* ((commit "66ff4fa5a7d4a77415caa676a45c2c6ea16562e7") diff --git a/gnu/packages/inkscape.scm b/gnu/packages/inkscape.scm index 56375f0759..075f901b2d 100644 --- a/gnu/packages/inkscape.scm +++ b/gnu/packages/inkscape.scm @@ -120,7 +120,7 @@ as the native format.") (define-public inkscape-1.0 (package (name "inkscape") - (version "1.0.1") + (version "1.0.2") (source (origin (method url-fetch) @@ -129,7 +129,7 @@ as the native format.") "inkscape-" version ".tar.xz")) (sha256 (base32 - "1hjp5nnyx2m3miji6q4lcb6zgbi498v641dc7apkqqvayknrb4ng")) + "12krl97a00gdcxxibsb7g2lgx5458mhx2437x0hvz350242j6gns")) (modules '((guix build utils) (ice-9 format))) (snippet diff --git a/gnu/packages/java.scm b/gnu/packages/java.scm index 758f8f1859..d6afb2e9d3 100644 --- a/gnu/packages/java.scm +++ b/gnu/packages/java.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> +;;; Copyright © 2021 Vincent Legoll <vincent.legoll@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -13120,7 +13121,7 @@ network protocols, and core version control algorithms.") (define-public abcl (package (name "abcl") - (version "1.6.0") + (version "1.8.0") (source (origin (method url-fetch) @@ -13128,7 +13129,7 @@ network protocols, and core version control algorithms.") version "/abcl-src-" version ".tar.gz")) (sha256 (base32 - "0hvbcsffr8n2xwdixc8wyw1bfl9fxn2gyy0c4nma7j9zbn0wwgw9")) + "0zr5mmqyj484vza089l8vc88d07g0m8ymxzglvar3ydwyvi1x1qx")) (patches (search-patches "abcl-fix-build-xml.patch")))) diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm index 5482400f02..70cf346ecd 100644 --- a/gnu/packages/kde-frameworks.scm +++ b/gnu/packages/kde-frameworks.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2016, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016-2019 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; Copyright © 2016 David Craven <david@craven.ch> ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> @@ -1047,13 +1047,12 @@ integration with a custom editor as well as a ready-to-use ("wayland" ,wayland) ("wayland-protocols" ,wayland-protocols))) (arguments - `(#:tests? #f ; FIXME tests require weston to run - ; weston requires wayland flags in mesa - #:phases + `(#:phases (modify-phases %standard-phases (add-before 'check 'check-setup (lambda _ (setenv "XDG_RUNTIME_DIR" "/tmp") + (setenv "QT_QPA_PLATFORM" "offscreen") #t))))) (home-page "https://community.kde.org/Frameworks") (synopsis "Qt-style API to interact with the wayland client and server") diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm index 0cc47e6337..73a2289f04 100644 --- a/gnu/packages/kde.scm +++ b/gnu/packages/kde.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016, 2017, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 David Craven <david@craven.ch> ;;; Copyright © 2016, 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017, 2018 Mark Meyer <mark@ofosos.org> @@ -714,6 +714,7 @@ different notification systems.") ("qtmultimedia" ,qtmultimedia) ("qtquickcontrols" ,qtquickcontrols) ("qtquickcontrols2" ,qtquickcontrols2) + ("qtwayland" ,qtwayland) ("qtx11extras" ,qtx11extras))) (home-page "https://community.kde.org/KDEConnect") (synopsis "Enable your devices to communicate with each other") @@ -758,6 +759,40 @@ communicate with each other. Here's a few things KDE Connect can do: charts.") (license license:lgpl2.1+))) +(define-public kdf + (package + (name "kdf") + (version "20.12.1") + (source (origin + (method url-fetch) + (uri (string-append "mirror://kde/stable/release-service/" + version "/src/kdf-" version ".tar.xz")) + (sha256 + (base32 + "0ba67hs4vlb3qyvdzhnpmf8p62df12s8aqw4hzf9vnxff3qix5k1")))) + (build-system qt-build-system) + (native-inputs + `(("extra-cmake-modules" ,extra-cmake-modules) + ("kdoctools" ,kdoctools))) + (inputs + `(("kcmutils" ,kcmutils) + ("kconfigwidgets" ,kconfigwidgets) + ("kcoreaddons" ,kcoreaddons) + ("ki18n" ,ki18n) + ("kiconthemes" ,kiconthemes) + ("kio" ,kio) + ("knotifications" ,knotifications) + ("kwidgetsaddons" ,kwidgetsaddons) + ("kxmlgui" ,kxmlgui) + ("qtbase" ,qtbase))) + (home-page "https://kde.org/applications/system/kdk") + (synopsis "View Disk Usage") + (description "KDiskFree displays the available file devices (hard drive +partitions, floppy and CD drives, etc.) along with information on their +capacity, free space, type and mount point. It also allows you to mount and +unmount drives and view them in a file manager.") + (license license:gpl2+))) + (define-public kcachegrind (package (name "kcachegrind") @@ -913,6 +948,33 @@ Python, PHP, and Perl.") a variety of formats, including PDF, PostScript, DejaVu, and EPub.") (license license:gpl2+))) +(define-public poxml + (package + (name "poxml") + (version "20.12.1") + (source (origin + (method url-fetch) + (uri + (string-append "mirror://kde/stable/release-service/" version + "/src/poxml-" version ".tar.xz")) + (sha256 + (base32 + "1smjvblx0jcv3afs2sr4qcmvhqd44iw24hvr9fppa3nxhrmjwmlk")))) + (build-system cmake-build-system) + (native-inputs + `(("extra-cmake-modules" ,extra-cmake-modules) + ("kdoctools" ,kdoctools))) + (inputs + `(("gettext" ,gettext-minimal) + ("qtbase" ,qtbase))) + (home-page "https://kde.org/applications/development") + (synopsis "Tools for translating DocBook XML files with Gettext") + (description "This is a collection of tools that facilitate translating +DocBook XML files using Gettext message files (PO files). Also included are +several command-line utilities for manipulating DocBook XML files, PO files and +PO template files.") + (license license:gpl2+))) + (define-public kdegraphics-mobipocket (package (name "kdegraphics-mobipocket") diff --git a/gnu/packages/libreoffice.scm b/gnu/packages/libreoffice.scm index 714072e84b..99382c991b 100644 --- a/gnu/packages/libreoffice.scm +++ b/gnu/packages/libreoffice.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2014 John Darrington <jmd@gnu.org> ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2016, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be> ;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> @@ -1085,7 +1085,7 @@ converting QuarkXPress file format. It supports versions 3.1 to 4.1.") (define-public libreoffice (package (name "libreoffice") - (version "6.4.6.2") + (version "6.4.7.2") (source (origin (method url-fetch) @@ -1094,7 +1094,7 @@ converting QuarkXPress file format. It supports versions 3.1 to 4.1.") "https://download.documentfoundation.org/libreoffice/src/" (version-prefix version 3) "/libreoffice-" version ".tar.xz")) (sha256 - (base32 "0k5aq1pfw2rpq28nkx6syrgwqbbdn6my9bnlqi3fn8qf572q30mb")))) + (base32 "0i3654rmzs8aazj8j3dmxamilslfrki0y4sksg3n1zygc2ddfk83")))) (build-system glib-or-gtk-build-system) (native-inputs `(("bison" ,bison) diff --git a/gnu/packages/libunwind.scm b/gnu/packages/libunwind.scm index 588b5dd314..9eaf26fca8 100644 --- a/gnu/packages/libunwind.scm +++ b/gnu/packages/libunwind.scm @@ -28,14 +28,14 @@ (define-public libunwind (package (name "libunwind") - (version "1.3.1") + (version "1.5.0") (source (origin (method url-fetch) (uri (string-append "mirror://savannah/libunwind/libunwind-" version ".tar.gz")) (sha256 (base32 - "1y0l08k6ak1mqbfj6accf9s5686kljwgsl4vcqpxzk5n74wpm6a3")))) + "05qhzcg1xag3l5m3c805np6k342gc0f3g087b7g16jidv59pccwh")))) (build-system gnu-build-system) (arguments ;; FIXME: As of glibc 2.25, we get 1 out of 34 test failures (2 are diff --git a/gnu/packages/libusb.scm b/gnu/packages/libusb.scm index c403181c77..cb0d45ce86 100644 --- a/gnu/packages/libusb.scm +++ b/gnu/packages/libusb.scm @@ -53,7 +53,7 @@ (define-public libusb (package (name "libusb") - (version "1.0.23") + (version "1.0.24") (source (origin (method url-fetch) @@ -61,7 +61,7 @@ "releases/download/v" version "/libusb-" version ".tar.bz2")) (sha256 - (base32 "13dd2a9x290d1q8nb1lqiaf36grcvns5ripk5k2xm0lajmpc04fv")))) + (base32 "0amilbi5qncdnrds3ji21vbiz1wvdm1fwp5qrxnk49xkyy2jdzby")))) (build-system gnu-build-system) ;; XXX: Enabling udev is now recommended, but eudev indirectly depends on diff --git a/gnu/packages/license.scm b/gnu/packages/license.scm index 975608c79b..369426768b 100644 --- a/gnu/packages/license.scm +++ b/gnu/packages/license.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018 Oleg Pykhalov <go.wigust@gmail.com> ;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -169,13 +169,13 @@ belonging to various licenses.") (define-public reuse (package (name "reuse") - (version "0.11.1") + (version "0.12.1") (source (origin (method url-fetch) (uri (pypi-uri "reuse" version)) (sha256 - (base32 "09qjb4f49vr0a7zrszab8g719ilg2p6b942mr0bgyvplrjikkid5")))) + (base32 "11i1xjbwbqjipzpbrbnp110zx1m49khn6dl5z3mjkjaz9kr6bl2f")))) (build-system python-build-system) (native-inputs `(("python-pytest" ,python-pytest) diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 477dd05b11..85afac2611 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -353,7 +353,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The current "stable" kernels. That is, the most recently released major ;; versions that are still supported upstream. -(define-public linux-libre-5.10-version "5.10.6") +(define-public linux-libre-5.10-version "5.10.10") (define deblob-scripts-5.10 (linux-libre-deblob-scripts linux-libre-5.10-version @@ -361,7 +361,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0hh27ccqimagr3aij7ygwikxw66y63sqwd0xlf49bhpjd090r9a7"))) (define-public linux-libre-5.10-pristine-source (let ((version linux-libre-5.10-version) - (hash (base32 "02v91afra3pcwfws74wxdsm8pfc57vws659b7j6jmsxm3hnd0rvp"))) + (hash (base32 "06fvgkrn9127xw9kly6l4ws3yv80q8xfqdzaam92lljim5pqdvb0"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.10))) @@ -369,7 +369,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." ;; The "longterm" kernels — the older releases with long-term upstream support. ;; Here are the support timelines: ;; <https://www.kernel.org/category/releases.html> -(define-public linux-libre-5.4-version "5.4.88") +(define-public linux-libre-5.4-version "5.4.92") (define deblob-scripts-5.4 (linux-libre-deblob-scripts linux-libre-5.4-version @@ -377,12 +377,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1xghbbnaisjd0k1klbyn1p7r6r4x5a1bpmkm56a3gh2zvw4s7mj8"))) (define-public linux-libre-5.4-pristine-source (let ((version linux-libre-5.4-version) - (hash (base32 "1ci432xanm7glgg05012kh43pfi4k771kzih0816y5674v0hg02b"))) + (hash (base32 "1zcl4dadyfrgmx6rh0ncy403rsqb1qs092m6zr6b3i14i3wpz4y0"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-5.4))) -(define-public linux-libre-4.19-version "4.19.166") +(define-public linux-libre-4.19-version "4.19.170") (define deblob-scripts-4.19 (linux-libre-deblob-scripts linux-libre-4.19-version @@ -390,12 +390,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1jiaw0as1ippkrjdpd52657w5mz9qczg3y2hlra7m9k0xawwiqlf"))) (define-public linux-libre-4.19-pristine-source (let ((version linux-libre-4.19-version) - (hash (base32 "03l86ykdjs5wa0n4wknpgy9dv2r6l92qfsyak373jkhs684z53mr"))) + (hash (base32 "0jjvwbxpfvmzj4z6gkd2mh3kz9vh8hsgsm0013866hzgz1j043fx"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.19))) -(define-public linux-libre-4.14-version "4.14.214") +(define-public linux-libre-4.14-version "4.14.217") (define deblob-scripts-4.14 (linux-libre-deblob-scripts linux-libre-4.14-version @@ -403,12 +403,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "1qij18inijj6c3ma8hv98yjagnzxdxyn134da9fd23ky8q6hbvky"))) (define-public linux-libre-4.14-pristine-source (let ((version linux-libre-4.14-version) - (hash (base32 "07ir4yw7s5c6yb3gjbgjvcqqdgpbsjxrvapgh6zs22ffd8hrchpm"))) + (hash (base32 "04adj8x7p1has4mh8ygxhqgwb1i08fz9izqw1y6xj5hh8cjnm8v2"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.14))) -(define-public linux-libre-4.9-version "4.9.250") +(define-public linux-libre-4.9-version "4.9.253") (define deblob-scripts-4.9 (linux-libre-deblob-scripts linux-libre-4.9-version @@ -416,12 +416,12 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0fxajshb75siq39lj5h8xvhdj8lcmddkslwlyj65rhlwk6g2r4b2"))) (define-public linux-libre-4.9-pristine-source (let ((version linux-libre-4.9-version) - (hash (base32 "15vizxd2i2311skjank406ny3bc30c5rz2p9jvh5xz1yv12vzgcy"))) + (hash (base32 "065w35vb0qp4fvnwmcx7f92inmx64f9r04zzwcwbs0826nl52nws"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.9))) -(define-public linux-libre-4.4-version "4.4.250") +(define-public linux-libre-4.4-version "4.4.253") (define deblob-scripts-4.4 (linux-libre-deblob-scripts linux-libre-4.4-version @@ -429,7 +429,7 @@ corresponding UPSTREAM-SOURCE (an origin), using the given DEBLOB-SCRIPTS." (base32 "0hhin1jpfkd6nwrb6xqxjzl3hdxy4pn8a15hy2d3d83yw6pflbsf"))) (define-public linux-libre-4.4-pristine-source (let ((version linux-libre-4.4-version) - (hash (base32 "12m14j8654rawj2znkyhvcnwnf53x10zlghxd0mpl8dfzwvn2f5b"))) + (hash (base32 "0nlqnfhrkaj2s582kc0wxqi0881hgp6l9z85qx4ckflc8jwrh7k6"))) (make-linux-libre-source version (%upstream-linux-source version hash) deblob-scripts-4.4))) @@ -641,6 +641,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration." ("CONFIG_MEMCG_KMEM" . #t) ("CONFIG_CPUSETS" . #t) ("CONFIG_PROC_PID_CPUSET" . #t) + ;; Allow disk encryption by default + ("CONFIG_DM_CRYPT" . m) ;; Modules required for initrd: ("CONFIG_NET_9P" . m) ("CONFIG_NET_9P_VIRTIO" . m) @@ -850,7 +852,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration." (description "GNU Linux-Libre is a free (as in freedom) variant of the Linux kernel. It has been modified to remove all non-free binary blobs.") - (license license:gpl2))) + (license license:gpl2) + (properties '((max-silent-time . 3600))))) ;don't timeout on blob scan. ;;; @@ -2215,7 +2218,7 @@ external rate conversion.") (define-public iptables (package (name "iptables") - (version "1.8.6") + (version "1.8.7") (source (origin (method url-fetch) @@ -2224,7 +2227,7 @@ external rate conversion.") (string-append "https://www.netfilter.org/projects/iptables/" "files/iptables-" version ".tar.bz2"))) (sha256 - (base32 "0rvp0k8a72h2snrdx48cfn75bfa0ycrd2xl3kjysbymq7q6gxx50")))) + (base32 "1w6qx3sxzkv80shk21f63rq41c84irpx68k62m2cv629n1mwj2f1")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -5631,7 +5634,7 @@ The collection contains a set of bandwidth and latency benchmark such as: (package (name "rng-tools") (home-page "https://github.com/nhorman/rng-tools") - (version "6.10") + (version "6.11") (source (origin (method git-fetch) (uri (git-reference (url home-page) @@ -5639,7 +5642,7 @@ The collection contains a set of bandwidth and latency benchmark such as: (file-name (git-file-name name version)) (sha256 (base32 - "0hbml37yxs0fs69g7f2x4ixq61z0029swy99rn7ykma9mi6b7ni9")))) + "0wwvi8a8k2ahhmwln4w970b8gd3in3g13jkbsapkpnspwmlqj5xa")))) (build-system gnu-build-system) (arguments `(;; Disable support for various hardware entropy sources as they need @@ -5916,29 +5919,29 @@ the default @code{nsswitch} and the experimental @code{umich_ldap}.") (define-public mcelog (package (name "mcelog") - (version "173") - (source (origin - (method url-fetch) - (uri (string-append "https://git.kernel.org/cgit/utils/cpu/mce/" - "mcelog.git/snapshot/v" version ".tar.gz")) - (sha256 - (base32 - "1a1j4lsvql3aiqbkdn10hhpvmhavhlr9qkh2scxcv1kn7rvvclih")) - (file-name (string-append name "-" version ".tar.gz")) - (modules '((guix build utils))) - (snippet - `(begin - ;; The snapshots lack a .git directory, - ;; breaking ‘git describe’. - (substitute* "Makefile" - (("\"unknown\"") (string-append "\"v" ,version "\""))) - #t)))) + (version "175") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://git.kernel.org/pub/scm/utils/cpu/mce/mcelog.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0vvrnjkh1jp7f6295syydg7lplqmcm8msdls3xyk8xfiz69xqdjz")) + (modules '((guix build utils))) + (snippet + `(begin + ;; The checkout lack a .git directory, breaking ‘git describe’. + (substitute* "Makefile" + (("\"unknown\"") (string-append "\"v" ,version "\""))) + #t)))) (build-system gnu-build-system) (arguments `(#:phases (modify-phases %standard-phases (delete 'configure)) ; no configure script #:make-flags (let ((out (assoc-ref %outputs "out"))) - (list "CC=gcc" + (list (string-append "CC=" ,(cc-for-target)) (string-append "prefix=" out) (string-append "DOCDIR=" out "/share/doc/" ,name "-" ,version) @@ -6439,14 +6442,14 @@ re-use code and to avoid re-inventing the wheel.") (define-public libnftnl (package (name "libnftnl") - (version "1.1.8") + (version "1.1.9") (source (origin (method url-fetch) (uri (string-append "mirror://netfilter.org/libnftnl/" "libnftnl-" version ".tar.bz2")) (sha256 - (base32 "04dp797llg3cqzivwrql30wg9mfr0ngnp0v5gs7jcdmp11dzm8q4")))) + (base32 "16jbp4fs5dz2yf4c3bl1sb48x9x9wi1chv39zwmfgya1k9pimcp9")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -6463,7 +6466,7 @@ used by nftables.") (define-public nftables (package (name "nftables") - (version "0.9.7") + (version "0.9.8") (source (origin (method url-fetch) @@ -6472,7 +6475,7 @@ used by nftables.") (string-append "https://www.nftables.org/projects/nftables" "/files/nftables-" version ".tar.bz2"))) (sha256 - (base32 "1c1c2475nifncv0ng8z77h2dpanlsx0bhqm15k00jb3a6a68lszy")))) + (base32 "1r4g22grhd4s1918wws9vggb8821sv4kkj8197ygxr6sar301z30")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--disable-man-doc"))) ; FIXME: Needs docbook2x. @@ -7862,7 +7865,7 @@ kernel side implementation.") (define-public erofs-utils (package (name "erofs-utils") - (version "1.2") + (version "1.2.1") (source (origin (method git-fetch) @@ -7871,7 +7874,7 @@ kernel side implementation.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "07hvijq2hsn3gg1kb8abrfk23n83j57yx8kyv4wqgwhhvd30myjc")))) + (base32 "1vb4mxsb59g29x7l22cffsqa8x743sra4j5zbmx89hjwpwm9vvcg")))) (build-system gnu-build-system) (inputs `(("lz4" ,lz4) diff --git a/gnu/packages/lisp-xyz.scm b/gnu/packages/lisp-xyz.scm index f0881bdfb7..3fefccf1e8 100644 --- a/gnu/packages/lisp-xyz.scm +++ b/gnu/packages/lisp-xyz.scm @@ -19,8 +19,10 @@ ;;; Copyright © 2020 Konrad Hinsen <konrad.hinsen@fastmail.net> ;;; Copyright © 2020 Dimakis Dimakakos <me@bendersteed.tech> ;;; Copyright © 2020 Oleg Pykhalov <go.wigust@gmail.com> -;;; Copyright © 2020 Adam Kandur <rndd@tuta.io> +;;; Copyright © 2020, 2021 Adam Kandur <rndd@tuta.io> ;;; Copyright © 2020, 2021 Sharlatan Hellseher <sharlatanus@gmail.com> +;;; Copyright © 2021 Aurora <rind38@disroot.org> +;;; Copyright © 2021 Matthew Kraai <kraai@ftbfs.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -52,10 +54,12 @@ #:use-module (guix utils) #:use-module (guix build-system asdf) #:use-module (guix build-system trivial) + #:use-module (gnu packages base) #:use-module (gnu packages c) #:use-module (gnu packages compression) #:use-module (gnu packages databases) #:use-module (gnu packages enchant) + #:use-module (gnu packages file) #:use-module (gnu packages fonts) #:use-module (gnu packages fontutils) #:use-module (gnu packages glib) @@ -456,33 +460,33 @@ compatible with ANSI-compliant Common Lisp implementations.") (sbcl-package->ecl-package sbcl-cl-ppcre)) (define-public sbcl-uax-15 - (let ((commit "e7439a91b72f533fcf736643e3ff0677b56c2e7d") - (revision "1")) - (package - (name "sbcl-uax-15") - (version (git-version "0.1" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/sabracrolleton/uax-15") - (commit commit))) - (file-name (git-file-name "uax-15" version)) - (sha256 - (base32 "1vf8a2aikgx0l5bsq0z9s0dw3sgx1887xhagdlf66fwffa5jskg6")))) - (build-system asdf-build-system/sbcl) - (native-inputs - `(("fiveam" ,sbcl-fiveam))) - (inputs - `(("cl-ppcre" ,sbcl-cl-ppcre) - ("split-sequence" ,sbcl-split-sequence))) - (arguments - `(#:asd-systems '("uax-15"))) - (home-page "https://github.com/sabracrolleton/uax-15") - (synopsis "Common Lisp implementation of unicode normalization functions") - (description "This package provides supports for unicode normalization, -RFC8264 and RFC7564.") - (license license:expat)))) + (package + (name "sbcl-uax-15") + (version "0.1.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sabracrolleton/uax-15") + (commit (string-append "v" version)))) + (file-name (git-file-name "uax-15" version)) + (sha256 + (base32 "0p2ckw7mzxhwa9vbwj2q2dzayz9dl94d9yqd2ynp0pc5v8i0n2fr")))) + (build-system asdf-build-system/sbcl) + (arguments + `(#:asd-systems + '("uax-15"))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (inputs + `(("cl-ppcre" ,sbcl-cl-ppcre) + ("split-sequence" ,sbcl-split-sequence))) + (home-page "https://github.com/sabracrolleton/uax-15") + (synopsis "Common Lisp implementation of unicode normalization functions") + (description + "This package provides supports for unicode normalization, RFC8264 and +RFC7564.") + (license license:expat))) (define-public cl-uax-15 (sbcl-package->cl-source-package sbcl-uax-15)) @@ -1939,6 +1943,51 @@ pretty, documentation is code.") ;; TODO: Find why the tests fail on ECL. ((#:tests? _ #f) #f)))))) +(define-public sbcl-mssql + (let ((commit "045602a19a32254108f2b75871049293f49731eb") + (revision "1")) + (package + (name "sbcl-mssql") + (version (git-version "0.0.3" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/archimag/cl-mssql") + (commit commit))) + (file-name (git-file-name "cl-mssql" version)) + (sha256 + (base32 "09i50adppgc1ybm3ka9vbindhwa2x29f9n3n0jkrryymdhb8zknm")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("cffi" ,sbcl-cffi) + ("freetds" ,freetds) + ("garbage-pools" ,sbcl-garbage-pools) + ("iterate" ,sbcl-iterate) + ("parse-number" ,sbcl-parse-number))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "src/mssql.lisp" + (("libsybdb" all) + (string-append (assoc-ref inputs "freetds") "/lib/" all))) + #t))))) + (home-page "https://github.com/archimag/cl-mssql") + (synopsis "Common Lisp library to interact with MS SQL Server databases") + (description + "@code{cl-mssql} provides an interface to connect to Microsoft SQL +server. It uses the @code{libsybdb} foreign library provided by the FreeTDS +project.") + (license license:llgpl)))) + +(define-public ecl-mssql + (sbcl-package->ecl-package sbcl-mssql)) + +(define-public cl-mssql + (sbcl-package->cl-source-package sbcl-mssql)) + (define-public sbcl-lisp-unit (let ((commit "89653a232626b67400bf9a941f9b367da38d3815")) (package @@ -2465,7 +2514,7 @@ non-consing thread safe queues and fibonacci priority queues.") (define-public sbcl-cffi (package (name "sbcl-cffi") - (version "0.21.0") + (version "0.23.0") (source (origin (method git-fetch) @@ -2474,7 +2523,7 @@ non-consing thread safe queues and fibonacci priority queues.") (commit (string-append "v" version)))) (file-name (git-file-name "cffi-bootstrap" version)) (sha256 - (base32 "1qalargz9bhp850qv60ffwpdqi4xirzar4l3g6qcg8yc6xqf2cjk")))) + (base32 "03s98imc5niwnpj3hhrafl7dmxq45g74h96sm68976k7ahi3vl5b")))) (build-system asdf-build-system/sbcl) (inputs `(("alexandria" ,sbcl-alexandria) @@ -4343,8 +4392,8 @@ Long Painful History of Time\".") (sbcl-package->ecl-package sbcl-local-time)) (define-public sbcl-trivial-mimes - (let ((commit "303f8ac0aa6ca0bc139aa3c34822e623c3723fab") - (revision "1")) + (let ((commit "a741fc2f567a4f86b853fd4677d75e62c03e51d9") + (revision "2")) (package (name "sbcl-trivial-mimes") (version (git-version "1.1.0" revision commit)) @@ -4356,7 +4405,7 @@ Long Painful History of Time\".") (commit commit))) (file-name (git-file-name name version)) (sha256 - (base32 "17jxgl47r695bvsb7wi3n2ws5rp1zzgvw0zii8cy5ggw4b4ayv6m")))) + (base32 "00kcm17q5plpzdj1qwg83ldhxksilgpcdkf3m9azxcdr968xs9di")))) (build-system asdf-build-system/sbcl) (native-inputs `(("stefil" ,sbcl-hu.dwim.stefil))) @@ -4367,7 +4416,7 @@ Long Painful History of Time\".") (description "This is a teensy library that provides some functions to determine the mime-type of a file.") - (license license:artistic2.0)))) + (license license:zlib)))) (define-public cl-trivial-mimes (sbcl-package->cl-source-package sbcl-trivial-mimes)) @@ -6032,8 +6081,8 @@ programming style and the efficiency of an iterative programming style.") (sbcl-package->ecl-package sbcl-series)) (define-public sbcl-periods - (let ((commit "983d4a57325db3c8def942f163133cec5391ec28") - (revision "1")) + (let ((commit "60383dcef88a1ac11f82804ae7a33c361dcd2949") + (revision "2")) (package (name "sbcl-periods") (version (git-version "0.0.2" revision commit)) @@ -6046,7 +6095,7 @@ programming style and the efficiency of an iterative programming style.") (file-name (git-file-name name version)) (sha256 (base32 - "0z30jr3lxz3cmi019fsl4lgcgwf0yqpn95v9zkkkwgymdrkd4lga")))) + "1ym2j4an9ig2hl210jg91gpf7xfnp6mlhkw3n9kkdnwiji3ipqlk")))) (build-system asdf-build-system/sbcl) (inputs `(("local-time" ,sbcl-local-time) @@ -6453,8 +6502,8 @@ ability to store all Common Lisp data types into streams.") (sbcl-package->ecl-package sbcl-cl-store)) (define-public sbcl-cl-gobject-introspection - (let ((commit "7b703e2384945ea0ac39d9b766de434a08d81560") - (revision "0")) + (let ((commit "d0136c8d9ade2560123af1fc55bbf70d2e3db539") + (revision "1")) (package (name "sbcl-cl-gobject-introspection") (version (git-version "0.3" revision commit)) @@ -6468,7 +6517,7 @@ ability to store all Common Lisp data types into streams.") (file-name (git-file-name name version)) (sha256 (base32 - "1zcqd2qj14f6b38vys8gr89s6cijsp9r8j43xa8lynilwva7bwyh")))) + "0dz0r73pq7yhz2iq2jnkq977awx2zws2qfxdcy33329sys1ii32p")))) (build-system asdf-build-system/sbcl) (inputs `(("alexandria" ,sbcl-alexandria) @@ -6480,12 +6529,9 @@ ability to store all Common Lisp data types into streams.") (native-inputs `(("fiveam" ,sbcl-fiveam))) (arguments - ;; TODO: Tests fail, see - ;; https://github.com/andy128k/cl-gobject-introspection/issues/70. - '(#:tests? #f - #:phases + '(#:phases (modify-phases %standard-phases - (add-after (quote unpack) (quote fix-paths) + (add-after 'unpack 'fix-paths (lambda* (#:key inputs #:allow-other-keys) (substitute* "src/init.lisp" (("libgobject-2\\.0\\.so") @@ -9124,40 +9170,56 @@ approach to templating.") (sbcl-package->ecl-package sbcl-cl-mysql)) (define-public sbcl-postmodern - (let ((commit "74469b25bbda990ec9b77e0d0eccdba0cd7e721a") - (revision "1")) - (package - (name "sbcl-postmodern") - (version (git-version "1.19" revision commit)) - (source - (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/marijnh/Postmodern") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 "0im7ymnyxjhn2w74jfg76k5gpr0gl33n31akx33hl28722ljd0hd")))) - (build-system asdf-build-system/sbcl) - (native-inputs - `(("fiveam" ,sbcl-fiveam))) - (inputs - `(("alexandria" ,sbcl-alexandria) - ("bordeaux-threads" ,sbcl-bordeaux-threads) - ("closer-mop" ,sbcl-closer-mop) - ("global-vars" ,sbcl-global-vars) - ("md5" ,sbcl-md5) - ("split-sequence" ,sbcl-split-sequence) - ("usocket" ,sbcl-usocket))) - (arguments - ;; TODO: Fix missing dependency errors for simple-date/postgres-glue, - ;; cl-postgres/tests and s-sql/tests. - `(#:tests? #f - #:asd-systems '("postmodern" - "simple-date/postgres-glue"))) - (synopsis "Common Lisp library for interacting with PostgreSQL") - (description - "@code{postmodern} is a Common Lisp library for interacting with + (package + (name "sbcl-postmodern") + (version "1.32.8") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/marijnh/Postmodern") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0vr5inbr8dldf6dsl0qj3h2yrnnsayzfwxfzwkn1pk7xbns2l78q")))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("bordeaux-threads" ,sbcl-bordeaux-threads) + ("cl-base64" ,sbcl-cl-base64) + ("cl-unicode" ,sbcl-cl-unicode) + ("closer-mop" ,sbcl-closer-mop) + ("global-vars" ,sbcl-global-vars) + ("ironclad" ,sbcl-ironclad) + ("local-time" ,sbcl-local-time) + ("md5" ,sbcl-md5) + ("split-sequence" ,sbcl-split-sequence) + ("uax-15" ,sbcl-uax-15) + ("usocket" ,sbcl-usocket))) + (arguments + ;; TODO: (Sharlatan-20210114T171037+0000) tests still failing but on other + ;; step, some functionality in `local-time' prevents passing tests. + ;; Error: + ;; + ;; Can't create directory + ;; /gnu/store + ;; /4f47agf1kyiz057ppy6x5p98i7mcbfsv-sbcl-local-time-1.0.6-2.a177eb9 + ;; /lib/common-lisp/sbcl/local-time/src/integration/ + ;; + ;; NOTE: (Sharlatan-20210124T191940+0000): When set env HOME to /tmp above + ;; issue is resolved but it required live test database to connect to now. + ;; Keep tests switched off. + `(#:tests? #f + #:asd-systems '("cl-postgres" + "s-sql" + "postmodern" + "simple-date" + "simple-date/postgres-glue"))) + (synopsis "Common Lisp library for interacting with PostgreSQL") + (description + "@code{postmodern} is a Common Lisp library for interacting with PostgreSQL databases. It provides the following features: @itemize @@ -9167,9 +9229,27 @@ foreign libraries. @item A syntax for mixing SQL and Lisp code. @item Convenient support for prepared statements and stored procedures. @item A metaclass for simple database-access objects. -@end itemize\n") - (home-page "https://marijnhaverbeke.nl/postmodern/") - (license license:zlib)))) +@end itemize\n + +This package produces 4 systems: postmodern, cl-postgres, s-sql, simple-date + +@code{SIMPLE-DATE} is a very basic implementation of date and time objects, used +to support storing and retrieving time-related SQL types. It is not loaded by +default and you can use local-time (which has support for timezones) instead. + +@code{S-SQL} is used to compile s-expressions to strings of SQL code, escaping +any Lisp values inside, and doing as much as possible of the work at compile +time. + +@code{CL-POSTGRES} is the low-level library used for interfacing with a PostgreSQL +server over a socket. + +@code{POSTMODERN} itself is a wrapper around these packages and provides higher +level functions, a very simple data access object that can be mapped directly to +database tables and some convient utilities. It then tries to put all these +things together into a convenient programming interface") + (home-page "https://marijnhaverbeke.nl/postmodern/") + (license license:zlib))) (define-public cl-postmodern (sbcl-package->cl-source-package sbcl-postmodern)) @@ -9179,15 +9259,18 @@ foreign libraries. (inherit (sbcl-package->ecl-package sbcl-postmodern)) (arguments `(#:tests? #f - #:asd-systems '("postmodern" + #:asd-systems '("cl-postgres" + "s-sql" + "postmodern" + "simple-date" "simple-date/postgres-glue") #:phases (modify-phases %standard-phases (add-after 'unpack 'fix-build (lambda _ (substitute* "cl-postgres.asd" - (("\\) \"usocket\"") - " :ecl) \"usocket\"")) + ((":or :sbcl :allegro :ccl :clisp" all) + (string-append all " :ecl"))) #t))))))) (define-public sbcl-db3 @@ -12113,6 +12196,77 @@ package.") (define-public ecl-claw-support (sbcl-package->ecl-package sbcl-claw-support)) +(define-public sbcl-claw + (let ((revision "0") + (commit "3cd4a96fca95eb9e8d5d069426694669f81b2250")) + (package + (name "sbcl-claw") + (version (git-version "1.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/borodust/claw") + (commit commit))) + (file-name (git-file-name "claw" version)) + (sha256 + (base32 "146yv0hc4hmk72562ssj2d41143pp84dcbd1h7f4nx1c7hf2bb0d")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cffi" ,sbcl-cffi) + ("cl-json" ,sbcl-cl-json) + ("cl-ppcre" ,sbcl-cl-ppcre) + ("claw-support" ,sbcl-claw-support) + ("local-time" ,sbcl-local-time) + ("trivial-features" ,sbcl-trivial-features))) + (home-page "https://github.com/borodust/claw") + (synopsis "Autowrapper for Common Lisp") + (description + "This is a Common Lisp autowrapping facility for quickly creating clean +and lean bindings to C libraries.") + (license license:bsd-2)))) + +(define-public cl-claw + (sbcl-package->cl-source-package sbcl-claw)) + +(define-public ecl-claw + (sbcl-package->ecl-package sbcl-claw)) + +(define-public sbcl-claw-utils + (let ((revision "0") + (commit "efe25016501973dc369f067a64c7d225802bc56f")) + (package + (name "sbcl-claw-utils") + ;; version is not specified + (version (git-version "0.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/borodust/claw-utils") + (commit commit))) + (file-name (git-file-name "claw-utils" version)) + (sha256 + (base32 "01df3kyf2qs3czi332dnz2s35x2j0fq46vgmsw7wjrrvnqc22mk5")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cffi" ,sbcl-cffi) + ("claw" ,sbcl-claw))) + (home-page "https://github.com/borodust/claw-utils") + (synopsis "Utilities for easier autowrapping") + (description + "This Common Lisp library contains various handy utilties to help +autowrapping with @code{claw}.") + (license license:expat)))) + +(define-public cl-claw-utils + (sbcl-package->cl-source-package sbcl-claw-utils)) + +(define-public ecl-claw-utils + (sbcl-package->ecl-package sbcl-claw-utils)) + (define-public sbcl-array-operations (let ((commit "75cbc3b1adb2e3ce2109489753d0f290b071e81b") (revision "0")) @@ -12967,3 +13121,531 @@ bringing dynamism to class definition.") (define-public cl-markdown (sbcl-package->cl-source-package sbcl-cl-markdown)) + +(define-public sbcl-magicffi + (let ((commit "d88f2f280c31f639e4e05be75215d8a8dce6aef2")) + (package + (name "sbcl-magicffi") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/dochang/magicffi/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0p6ysa92fk34bhxpw7bycbfgw150fv11z9x8jr9xb4lh8cm2hvp6")))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("alexandria" ,sbcl-alexandria))) + (inputs + `(("cffi" ,sbcl-cffi) + ("ppcre" ,sbcl-cl-ppcre) + ("libmagic" ,file))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((magic (assoc-ref inputs "libmagic"))) + (substitute* "grovel.lisp" + (("/usr/include/magic.h") + (string-append magic "/include/magic.h"))) + (substitute* "api.lisp" + ((":default \"libmagic\"" all) + (string-append ":default \"" magic "/lib/libmagic\""))))))))) + (home-page "https://common-lisp.net/project/magicffi/") + (synopsis "Common Lisp interface to libmagic based on CFFI") + (description + "MAGICFFI is a Common Lisp CFFI interface to libmagic(3), the file type +determination library using @emph{magic} numbers.") + (license license:bsd-2)))) + +(define-public ecl-magicffi + (sbcl-package->ecl-package sbcl-magicffi)) + +(define-public cl-magicffi + (sbcl-package->cl-source-package sbcl-magicffi)) + +(define-public sbcl-shlex + (let ((commit "c5616dffca0d4d8ddbc1cd6f37a96d88477b2740")) + (package + (name "sbcl-shlex") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/cl-shlex") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1nas024n4wv319bf40aal96g72bgi9nkapj2chywj2cc6r8hzkfg")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("serapeum" ,sbcl-serapeum) + ("ppcre" ,sbcl-cl-ppcre) + ("unicode" ,sbcl-cl-unicode))) + (home-page "https://github.com/ruricolist/cl-shlex") + (synopsis "Common Lisp lexical analyzer for shell-like syntaxes") + (description + "This library contains a lexer for syntaxes that use shell-like rules +for quoting and commenting. It is a port of the @code{shlex} module from Python’s +standard library.") + (license license:expat)))) + +(define-public ecl-shlex + (sbcl-package->ecl-package sbcl-shlex)) + +(define-public cl-shlex + (sbcl-package->cl-source-package sbcl-shlex)) + +(define-public sbcl-cmd + (let ((commit "e6a54dbf660bf229c80abc124fa47e7bb6d20c93")) + (package + (name "sbcl-cmd") + (version (git-version "0.0.1" "2" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ruricolist/cmd/") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "1i0l8ci4cnkx84q4afmpkq51nxah24fqpi6k9kgjbxz6li3zp8hy")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("coreutils" ,coreutils) + ("serapeum" ,sbcl-serapeum) + ("shlex" ,sbcl-shlex) + ("trivia" ,sbcl-trivia))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref inputs "coreutils") "/bin"))) + (substitute* "cmd.lisp" + (("\"env\"") (format #f "\"~a/env\"" bin)) + (("\"pwd\"") (format #f "\"~a/pwd\"" bin))))))))) + (home-page "https://github.com/ruricolist/cmd") + (synopsis "Conveniently run external programs from Common Lisp") + (description + "A utility for running external programs, built on UIOP. +Cmd is designed to be natural to use, protect against shell interpolation and +be usable from multi-threaded programs.") + (license license:expat)))) + +(define-public ecl-cmd + (sbcl-package->ecl-package sbcl-cmd)) + +(define-public cl-cmd + (sbcl-package->cl-source-package sbcl-cmd)) + +(define-public sbcl-ppath + (let ((commit "eb1a8173b4d1d691ea9a7699412123462f58c3ce")) + (package + (name "sbcl-ppath") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/fourier/ppath/") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "1c46q9lmzqv14z80d3fwdawgn3pn4922x31fyqvsvbcjm4hd16fb")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("cffi" ,sbcl-cffi) + ("osicat" ,sbcl-osicat) + ("ppcre" ,sbcl-cl-ppcre) + ("split-sequence" ,sbcl-split-sequence) + ("trivial-features" ,sbcl-trivial-features))) + (native-inputs + `(("cl-fad" ,sbcl-cl-fad) + ("prove" ,sbcl-prove))) + (home-page "https://github.com/fourier/ppath") + (synopsis "Common Lisp's implementation of the Python's os.path module") + (description + "This library is a path strings manipulation library inspired by +Python's @code{os.path}. All functionality from @code{os.path} is supported on +major operation systems. + +The philosophy behind is to use simple strings and \"dumb\" string +manipulation functions to handle paths and filenames. Where possible the +corresponding OS system functions are called.") + (license license:bsd-2)))) + +(define-public ecl-ppath + (sbcl-package->ecl-package sbcl-ppath)) + +(define-public cl-ppath + (sbcl-package->cl-source-package sbcl-ppath)) + +(define-public sbcl-trivial-escapes + (let ((commit "1eca78da2078495d09893be58c28b3aa7b8cc4d1")) + (package + (name "sbcl-trivial-escapes") + (version (git-version "1.2.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/williamyaoh/trivial-escapes") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0v6h8lk17iqv1qkxgqjyzn8gi6v0hvq2vmfbb01md3zjvjqxn6lr")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("named-readtables" ,sbcl-named-readtables))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (home-page "https://github.com/williamyaoh/trivial-escapes") + (synopsis "C-style escape directives for Common Lisp") + (description + "This Common Lisp library interprets escape characters the same way that +most other programming language do. +It provides four readtables. The default one lets you write strings like this: +@code{#\"This string has\na newline in it!\"}.") + (license license:public-domain)))) + +(define-public ecl-trivial-escapes + (sbcl-package->ecl-package sbcl-trivial-escapes)) + +(define-public cl-trivial-escapes + (sbcl-package->cl-source-package sbcl-trivial-escapes)) + +(define-public sbcl-cl-indentify + (let ((commit "eb770f434defa4cd41d84bca822428dfd0dbac53")) + (package + (name "sbcl-cl-indentify") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yitzchak/cl-indentify") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0ha36bhg474vr76vfhr13szc8cfdj1ickg92k1icz791bqaqg67p")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("command-line-arguments" ,sbcl-command-line-arguments) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams))) + (native-inputs + `(("trivial-escapes" ,sbcl-trivial-escapes) + ("rove" ,sbcl-rove))) + (home-page "https://github.com/yitzchak/cl-indentify") + (synopsis "Code beautifier for Common Lisp") + (description + "A library and command line utility to automatically indent Common Lisp +source files.") + (license license:expat)))) + +(define-public ecl-cl-indentify + (sbcl-package->ecl-package sbcl-cl-indentify)) + +(define-public cl-indentify + (sbcl-package->cl-source-package sbcl-cl-indentify)) + +(define-public sbcl-concrete-syntax-tree + (let ((commit "abd242a59dadc5452aa9dbc1d313c83ec2c11f46")) + (package + (name "sbcl-concrete-syntax-tree") + (version (git-version "0.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/s-expressionists/Concrete-Syntax-Tree") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "1lyrglc3h1if44gxd9cwv90wa90nrdjvb7fry39b1xn8ywdfa7di")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("acclimation" ,sbcl-acclimation))) + (home-page "https://github.com/s-expressionists/Concrete-Syntax-Tree") + (synopsis "Parse Common Lisp code into a concrete syntax tree") + (description + "This library is intended to solve the problem of source tracking for +Common Lisp code. + +By \"source tracking\", it is meant that code elements that have a known +origin in the form of a position in a file or in an editor buffer are +associated with some kind of information about this origin. + +Since the exact nature of such origin information depends on the Common Lisp +implementation and the purpose of wanting to track that origin, the library +does not impose a particular structure of this information. Instead, it +provides utilities for manipulating source code in the form of what is called +concrete syntax trees (CSTs for short) that preserve this information about +the origin.") + (license license:bsd-2)))) + +(define-public ecl-concrete-syntax-tree + (sbcl-package->ecl-package sbcl-concrete-syntax-tree)) + +(define-public cl-concrete-syntax-tree + (sbcl-package->cl-source-package sbcl-concrete-syntax-tree)) + +(define-public sbcl-eclector + (package + (name "sbcl-eclector") + (version "0.5.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/s-expressionists/Eclector") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0bwkla0jdp5bg0q1zca5wg22b0nbdmglgax345nrhsf8bdrh47wm")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("acclimation" ,sbcl-acclimation) + ("alexandria" ,sbcl-alexandria) + ("closer-mop" ,sbcl-closer-mop) + ("concrete-syntax-tree" ,sbcl-concrete-syntax-tree))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (arguments + '(#:asd-systems '("eclector" + "eclector-concrete-syntax-tree"))) + (home-page "https://s-expressionists.github.io/Eclector/") + (synopsis "Highly customizable, portable Common Lisp reader") + (description + "Eclector is a portable Common Lisp reader that is highly customizable, +can recover from errors and can return concrete syntax trees. + +In contrast to many other reader implementations, eclector can recover from +most errors in the input supplied to it and continue reading. This capability +is realized as a restart. + +It can also produce instances of the concrete syntax tree classes provided by +the concrete syntax tree library.") + (license license:bsd-2))) + +(define-public ecl-eclector + (sbcl-package->ecl-package sbcl-eclector)) + +(define-public cl-eclector + (sbcl-package->cl-source-package sbcl-eclector)) + +(define-public sbcl-jsown + (let ((commit "744c4407bef58dfa876d9da0b5c0205d869e7977")) + (package + (name "sbcl-jsown") + (version (git-version "1.0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/madnificent/jsown") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0gadvmf1d9bq35s61z76psrsnzwwk12svi66jigf491hv48wigw7")))) + (build-system asdf-build-system/sbcl) + (home-page "https://github.com/madnificent/jsown") + (synopsis "Fast JSON reader / writer library for Common Lisp") + (description + "@code{jsown} is a high performance Common Lisp JSON parser. Its aim +is to allow for the fast parsing of JSON objects in Common Lisp. Recently, +functions and macros have been added to ease the burden of writing and editing +@code{jsown} objects. + +@code{jsown} allows you to parse JSON objects quickly to a modifiable Lisp +list and write them back. If you only need partial retrieval of objects, +@code{jsown} allows you to select the keys which you would like to see parsed. +@code{jsown} also has a JSON writer and some helper methods to alter the JSON +objects themselves.") + (license license:expat)))) + +(define-public ecl-jsown + (sbcl-package->ecl-package sbcl-jsown)) + +(define-public cl-jsown + (sbcl-package->cl-source-package sbcl-jsown)) + +(define-public sbcl-system-locale + (let ((commit "4b334bc2fa45651bcaa28ae7d9331095d6bf0a17")) + (package + (name "sbcl-system-locale") + (version (git-version "1.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Shinmera/system-locale/") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "00p5c053kmgq4ks6l9mxsqz6g3bjcybvkvj0bh3r90qgpkaawm1p")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("documentation-utils" ,sbcl-documentation-utils))) + (home-page "https://shinmera.github.io/system-locale/") + (synopsis "Get the system's locale and language settings in Common Lisp") + (description + "This library retrieves locale information configured on the +system. This is helpful if you want to write applications and libraries that +display messages in the user's native language.") + (license license:zlib)))) + +(define-public ecl-system-locale + (sbcl-package->ecl-package sbcl-system-locale)) + +(define-public cl-system-locale + (sbcl-package->cl-source-package sbcl-system-locale)) + +(define-public sbcl-language-codes + (let ((commit "e7aa0e37cb97a3d37d6bc7316b479d01bff8f42e")) + (package + (name "sbcl-language-codes") + (version (git-version "1.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Shinmera/language-codes") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0py176ibmsc01n5r0q1bs1ykqf5jwdbh8kx0j1a814l9y51241v0")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("documentation-utils" ,sbcl-documentation-utils))) + (home-page "https://shinmera.github.io/language-codes/") + (synopsis "Map ISO language codes to language names in Common Lisp") + (description + "This is a small library providing the ISO-639 language code to +language name mapping.") + (license license:zlib)))) + +(define-public ecl-language-codes + (sbcl-package->ecl-package sbcl-language-codes)) + +(define-public cl-language-codes + (sbcl-package->cl-source-package sbcl-language-codes)) + +(define-public sbcl-multilang-documentation + (let ((commit "59e798a07e949e8957a20927f52aca425d84e4a0")) + (package + (name "sbcl-multilang-documentation") + (version (git-version "1.0.0" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/Shinmera/multilang-documentation") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "13y5jskx8n2b7kimpfarr8v777w3b7zj5swg1b99nj3hk0843ixw")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("documentation-utils" ,sbcl-documentation-utils) + ("language-codes" ,sbcl-language-codes) + ("system-locale" ,sbcl-system-locale))) + (home-page "https://shinmera.github.io/multilang-documentation/") + (synopsis "Add multiple languages support to Common Lisp documentation") + (description + "This library provides a drop-in replacement function for +cl:documentation that supports multiple docstrings per-language, allowing you +to write documentation that can be internationalised.") + (license license:zlib)))) + +(define-public ecl-multilang-documentation + (sbcl-package->ecl-package sbcl-multilang-documentation)) + +(define-public cl-multilang-documentation + (sbcl-package->cl-source-package sbcl-multilang-documentation)) + +(define-public sbcl-trivial-do + (let ((commit "03a1729f1e71bad3ebcf6cf098a0cce52dfa1163")) + (package + (name "sbcl-trivial-do") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yitzchak/trivial-do") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "1ffva79nkicc7wc8c2ic5nayis3b2rk5sxzj74yjkymkjgbpcrgd")))) + (build-system asdf-build-system/sbcl) + (home-page "https://github.com/yitzchak/trivial-do") + (synopsis "Additional dolist style macros for Common Lisp") + (description + "Additional dolist style macros for Common Lisp, such as +@code{doalist}, @code{dohash}, @code{dolist*}, @code{doplist}, @code{doseq} +and @code{doseq*}.") + (license license:zlib)))) + +(define-public ecl-trivial-do + (sbcl-package->ecl-package sbcl-trivial-do)) + +(define-public cl-trivial-do + (sbcl-package->cl-source-package sbcl-trivial-do)) + +(define-public sbcl-common-lisp-jupyter + (let ((commit "61a9a8e7a18e2abd7af7c697ba5146fd19bd9d62")) + (package + (name "sbcl-common-lisp-jupyter") + (version (git-version "0.1" "1" commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/yitzchak/common-lisp-jupyter") + (commit commit))) + (file-name (git-file-name name commit)) + (sha256 + (base32 "0zyzl55l45w9z65ygi5pcwda5w5p1j1bb0p2zg2n5cpv8344dkh2")))) + (build-system asdf-build-system/sbcl) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("babel" ,sbcl-babel) + ("bordeaux-threads" ,sbcl-bordeaux-threads) + ("cl-base64" ,sbcl-cl-base64) + ("cl-indentify" ,sbcl-cl-indentify) + ("closer-mop" ,sbcl-closer-mop) + ("eclector" ,sbcl-eclector) + ("ironclad" ,sbcl-ironclad) + ("iterate" ,sbcl-iterate) + ("jsown" ,sbcl-jsown) + ("multilang-documentation" ,sbcl-multilang-documentation) + ("pzmq" ,sbcl-pzmq) + ("puri" ,sbcl-puri) + ("static-vectors" ,sbcl-static-vectors) + ("trivial-do" ,sbcl-trivial-do) + ("trivial-garbage" ,sbcl-trivial-garbage) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams) + ("trivial-mimes" ,sbcl-trivial-mimes))) + (home-page "https://yitzchak.github.io/common-lisp-jupyter/") + (synopsis "Common Lisp kernel for Jupyter") + (description + "This is a Common Lisp kernel for Jupyter along with a library for +building Jupyter kernels, based on Maxima-Jupyter which was based on +@code{cl-jupyter}.") + (license license:zlib)))) + +(define-public ecl-common-lisp-jupyter + (sbcl-package->ecl-package sbcl-common-lisp-jupyter)) + +(define-public cl-common-lisp-jupyter + (sbcl-package->cl-source-package sbcl-common-lisp-jupyter)) diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index 9ef37d706b..3c09b0af8a 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -17,6 +17,7 @@ ;;; Copyright © 2019, 2020 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Zhu Zihao <all_but_last@163.com> +;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -1083,7 +1084,7 @@ assembler, PEG) is less than 1MB.") (define-public lisp-repl-core-dumper (package (name "lisp-repl-core-dumper") - (version "0.3.0") + (version "0.5.0") (source (origin (method git-fetch) @@ -1092,7 +1093,7 @@ assembler, PEG) is less than 1MB.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1w7x7d7bnrdj0bd04vnjy7d7sngvcx1yjr4iw429hdd9lzlg8rbg")))) + (base32 "1hrilm9lxy7zdidn4wac4yfqryg3hfw0371nanhd7g9bcfjx7n1q")))) (build-system copy-build-system) (arguments '(#:install-plan @@ -1102,12 +1103,14 @@ assembler, PEG) is less than 1MB.") (add-before 'install 'fix-utils-path (lambda* (#:key inputs #:allow-other-keys) (let* ((coreutils (string-append (assoc-ref inputs "coreutils") "/bin/")) + (cat (string-append coreutils "cat")) (paste (string-append coreutils "paste")) (sort (string-append coreutils "sort")) (basename (string-append coreutils "basename")) (sed (string-append (assoc-ref inputs "sed") "/bin/sed"))) (substitute* "lisp-repl-core-dumper" (("\\$\\(basename") (string-append "$(" basename)) + (("\\<cat\\>") cat) (("\\<paste\\>") paste) (("\\<sed\\>") sed) (("\\<sort\\>") sort)))))))) @@ -1126,3 +1129,43 @@ and make for REPLs that start blazing fast. @item It allows you to include arbitrary libraries. @end itemize\n") (license license:gpl3+))) + +(define-public buildapp + (package + (name "buildapp") + (version "1.5.6") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/xach/buildapp") + (commit (string-append "release-" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "020ipjfqa3l8skd97cj5kq837wgpj28ygfxnkv64cnjrlbnzh161")))) + (build-system gnu-build-system) + (native-inputs + `(("sbcl" ,sbcl))) + (arguments + `(#:tests? #f + #:make-flags + (list (string-append "DESTDIR=" (assoc-ref %outputs "out"))) + #:strip-binaries? #f + #:phases + (modify-phases %standard-phases + (delete 'configure) + (add-after 'unpack 'set-home + (lambda _ + (setenv "HOME" "/tmp") + #t)) + (add-before 'install 'create-target-directory + (lambda* (#:key outputs #:allow-other-keys) + (let* ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (mkdir-p bin) + #t)))))) + (home-page "https://www.xach.com/lisp/buildapp/") + (synopsis "Makes easy to build application executables with SBCL") + (description + "Buildapp is an application for SBCL or CCL that configures and saves an +executable Common Lisp image. It is similar to cl-launch and hu.dwim.build. ") + (license license:bsd-2))) diff --git a/gnu/packages/lua.scm b/gnu/packages/lua.scm index 950090afcb..b029400cb2 100644 --- a/gnu/packages/lua.scm +++ b/gnu/packages/lua.scm @@ -3,7 +3,7 @@ ;;; Copyright © 2014 Raimon Grau <raimonster@gmail.com> ;;; Copyright © 2014 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2014 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2016, 2017, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 doncatnip <gnopap@gmail.com> ;;; Copyright © 2016, 2017, 2019 Clément Lassieur <clement@lassieur.org> @@ -1066,7 +1066,7 @@ shell command executions.") (define-public fennel (package (name "fennel") - (version "0.7.0") + (version "0.8.0") (source (origin (method git-fetch) (uri (git-reference @@ -1075,7 +1075,7 @@ shell command executions.") (file-name (git-file-name name version)) (sha256 (base32 - "17pdcwhfw754fblppw46qphnsvxrn3b7066cz54lv8c0c12iryim")) + "1jng33vmnk6mi37l3x2z0plng940jpj7kz1s493ki80z3mkaxjfg")) (modules '((guix build utils))) (snippet '(begin @@ -1083,18 +1083,36 @@ shell command executions.") (build-system gnu-build-system) (arguments '(#:make-flags (list (string-append "PREFIX=" (assoc-ref %outputs "out"))) + #:tests? #t ; even on cross-build #:test-target "test" #:phases (modify-phases %standard-phases (delete 'configure) + (add-before 'build 'patch-lua-calls + (lambda* (#:key inputs #:allow-other-keys) + (let ((lua (string-append (assoc-ref inputs "lua") "/bin/lua"))) + (setenv "LUA" lua) + (substitute* "old/launcher.lua" + (("/usr/bin/env lua") lua)) + #t))) (add-after 'build 'patch-fennel - (lambda _ + (lambda* (#:key inputs #:allow-other-keys) (substitute* "fennel" - (("/usr/bin/env lua") (which "lua"))) + (("/usr/bin/env .*lua") + (string-append (assoc-ref inputs "lua") "/bin/lua"))) + #t)) + (delete 'check) + (add-after 'install 'check + (assoc-ref %standard-phases 'check)) + (add-after 'install 'install-manpage + (lambda* (#:key outputs #:allow-other-keys) + (install-file "fennel.1" + (string-append (assoc-ref outputs "out") + "/share/man/man1")) #t))))) (inputs `(("lua" ,lua))) (home-page "https://fennel-lang.org/") - (synopsis "A Lisp that compiles to Lua") + (synopsis "Lisp that compiles to Lua") (description "Fennel is a programming language that brings together the speed, simplicity, and reach of Lua with the flexibility of a Lisp syntax and macro diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 043f5c5fec..ab3a19578e 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -456,7 +456,8 @@ aliasing facilities to work just as they would on normal mail.") (sha256 (base32 "1m4ig69qw4g3lhm4351snmy5i0ch65fqc9vqqdybr6jy21w7w225")) - (patches (search-patches "mutt-store-references.patch")))) + (patches (search-patches "mutt-store-references.patch" + "mutt-CVE-2021-3181.patch")))) (build-system gnu-build-system) (inputs `(("cyrus-sasl" ,cyrus-sasl) @@ -2631,7 +2632,7 @@ converts them to maildir format directories.") (define-public mblaze (package (name "mblaze") - (version "1.0") + (version "1.1") (source (origin (method git-fetch) @@ -2640,7 +2641,7 @@ converts them to maildir format directories.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0hxy3mjjv4hg856sl1r15fdmqaw4s9c26b3lidsd5x0kpqy601ai")))) + (base32 "1bir977vnqs76g8jgv1yivqw0wk2kn56l3l5r4w2ipix3fir138y")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 7866bcc6eb..eff1480e62 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -104,6 +104,7 @@ #:use-module (gnu packages less) #:use-module (gnu packages lisp) #:use-module (gnu packages linux) + #:use-module (gnu packages llvm) #:use-module (gnu packages logging) #:use-module (gnu packages lua) #:use-module (gnu packages gnome) @@ -919,14 +920,14 @@ singular value problems.") (define-public gnuplot (package (name "gnuplot") - (version "5.2.7") + (version "5.4.1") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/gnuplot/gnuplot/" version "/gnuplot-" version ".tar.gz")) (sha256 - (base32 "1vglp4la40f5dpj0zdj63zprrkyjgzy068p35bz5dqxjyczm1zlp")))) + (base32 "03jrqs5lvxmbbz2c4g17dn2hrxqwd3hfadk9q8wbkbkyas2h8sbb")))) (build-system gnu-build-system) (inputs `(("readline" ,readline) ("cairo" ,cairo) @@ -938,7 +939,9 @@ singular value problems.") ("texlive" ,texlive-tiny))) (arguments `(#:configure-flags (list (string-append "--with-texdir=" %output - "/texmf-local/tex/latex/gnuplot")))) + "/texmf-local/tex/latex/gnuplot")) + ;; Plot on a dumb terminal during tests. + #:make-flags '("GNUTERM=dumb"))) (home-page "http://www.gnuplot.info") (synopsis "Command-line driven graphing utility") (description "Gnuplot is a portable command-line driven graphing @@ -3502,7 +3505,7 @@ point numbers.") (define-public wxmaxima (package (name "wxmaxima") - (version "20.06.6") + (version "20.12.2") (source (origin (method git-fetch) @@ -3511,22 +3514,20 @@ point numbers.") (commit (string-append "Version-" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "054f7n5kx75ng5j20rd5q27n9xxk03mrd7sbxyym1lsswzimqh4w")))) + (base32 "1rxnxk7yanb9ac5pxbii6k7gg3b09pbp9rmwvsvgpbrk17mg79r9")))) (build-system cmake-build-system) (native-inputs - `(("gettext" ,gettext-minimal) - ("xorg-server" ,xorg-server-for-tests))) - ;; TODO: Add libomp for multithreading support. - ;; As of right now, enabling libomp causes the imageCells.wxm test to fail. + `(("gettext" ,gettext-minimal))) (inputs - `(("wxwidgets" ,wxwidgets) + `(("libomp" ,libomp) + ("wxwidgets" ,wxwidgets) ("maxima" ,maxima) ;; Runtime support. ("adwaita-icon-theme" ,adwaita-icon-theme) ("gtk+" ,gtk+) ("shared-mime-info" ,shared-mime-info))) (arguments - `(#:test-target "test" + `(#:tests? #f ; tests fail non-deterministically #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-doc-path @@ -3537,13 +3538,6 @@ point numbers.") (substitute* "src/Dirstructure.cpp" (("/doc/wxmaxima-\\%s") "/doc/wxmaxima")) #t)) - (add-before 'check 'pre-check - (lambda _ - ;; Tests require a running X server. - (system "Xvfb :1 &") - (setenv "DISPLAY" ":1") - (setenv "HOME" (getcwd)) - #t)) (add-after 'install 'wrap-program (lambda* (#:key inputs outputs #:allow-other-keys) (wrap-program (string-append (assoc-ref outputs "out") diff --git a/gnu/packages/matrix.scm b/gnu/packages/matrix.scm index 426f26d1e1..8a3a1283fa 100644 --- a/gnu/packages/matrix.scm +++ b/gnu/packages/matrix.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2020 Alex ter Weele <alex.ter.weele@gmail.com> ;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -61,13 +61,13 @@ an LDAP server.") (define-public synapse (package (name "synapse") - (version "1.24.0") + (version "1.25.0") (source (origin (method url-fetch) (uri (pypi-uri "matrix-synapse" version)) (sha256 (base32 - "0pmn8aqc7jj2xdrwljjz2vwg58hlyxp9axac471pcmg2vqais5yb")))) + "0382qcsmgvg24p0xvb37kn3y1kd3bn363kblgwg58iy92df0pga4")))) (build-system python-build-system) ;; TODO Run tests with ‘PYTHONPATH=. trial3 tests’. (propagated-inputs diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm index c585326124..1820a146d1 100644 --- a/gnu/packages/messaging.scm +++ b/gnu/packages/messaging.scm @@ -24,7 +24,7 @@ ;;; Copyright © 2020 Reza Alizadeh Majd <r.majd@pantherx.org> ;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2020 Mason Hock <chaosmonk@riseup.net> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Raghav Gururajan <raghavgururajan@disroot.org> ;;; Copyright © 2020 Robert Karszniewicz <avoidr@posteo.de> ;;; @@ -1998,7 +1998,7 @@ is also scriptable and extensible via Guile.") (define-public libmesode (package (name "libmesode") - (version "0.9.3") + (version "0.10.1") (source (origin (method git-fetch) (uri (git-reference @@ -2007,7 +2007,7 @@ is also scriptable and extensible via Guile.") (file-name (git-file-name name version)) (sha256 (base32 - "0xzfg1xx88cn36352nnjlb1p7xyw32yqkhjzq10px88iaaqz1vv0")))) + "1bxnkhrypgv41qyy1n545kcggmlw1hvxnhwihijhhcf2pxd2s654")))) (build-system gnu-build-system) (inputs `(("expat" ,expat) @@ -2058,7 +2058,7 @@ are both supported).") (define-public profanity (package (name "profanity") - (version "0.9.5") + (version "0.10.0") (source (origin (method url-fetch) @@ -2067,7 +2067,7 @@ are both supported).") version ".tar.gz")) (sha256 (base32 - "00j9l9v62rz9hprgiy1vrz8v3v59ph18h8kskqxr31fgqvjv5xr3")))) + "137z77514fgj2dk13d12g4jrn6gs5k85nwrk1r1kiv7rj0jy61aa")))) (build-system glib-or-gtk-build-system) (arguments `(#:configure-flags @@ -2354,7 +2354,7 @@ There is support for: (define-public quaternion (package (name "quaternion") - (version "0.0.9.4e") + (version "0.0.9.4f") (outputs '("out" "debug")) (source (origin @@ -2364,7 +2364,7 @@ There is support for: (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "0hqhg7l6wpkdbzrdjvrbqymmahziri07ba0hvbii7dd2p0h248fv")))) + (base32 "1q9ddz4rs02a0w3lwrsjnh59khv38cq9f0kv09vnwvazvayn87ck")))) (build-system qt-build-system) (inputs `(("libqmatrixclient" ,libqmatrixclient) @@ -2375,7 +2375,7 @@ There is support for: ("qtquickcontrols2" ,qtquickcontrols2) ("qtsvg" ,qtsvg) ("qttools" ,qttools) - ("xdg-utils", xdg-utils))) + ("xdg-utils" ,xdg-utils))) (arguments `(#:tests? #f)) ; no tests (home-page "https://matrix.org/docs/projects/client/quaternion.html") diff --git a/gnu/packages/mp3.scm b/gnu/packages/mp3.scm index c32b3cba11..34390d3696 100644 --- a/gnu/packages/mp3.scm +++ b/gnu/packages/mp3.scm @@ -82,6 +82,10 @@ ;; remove option that is not supported by gcc any more (substitute* "configure" ((" -fforce-mem") "")) #t)) + ;; Normally one should not add a pkg-config file if one is not provided + ;; by upstream developers, but Audacity expects a pkg-config file for + ;; this package, and other major GNU/Linux distributions already provide + ;; such a file. (add-after 'install 'install-pkg-config (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) @@ -127,6 +131,10 @@ This package contains the library.") (arguments `(#:phases (modify-phases %standard-phases + ;; Normally one should not add a pkg-config file if one is not provided + ;; by upstream developers, but Audacity expects a pkg-config file for + ;; this package, and other major GNU/Linux distributions already provide + ;; such a file. (add-after 'install 'install-pkg-config (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm index 6066913f16..4138f4d2f6 100644 --- a/gnu/packages/mpd.scm +++ b/gnu/packages/mpd.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2020 Lars-Dominik Braun <lars@6xq.net> ;;; Copyright © 2020 Simon Streit <simon@netpanic.org> +;;; Copyright © 2021 Noah Evans <noah@nevans.me> ;;; ;;; This file is part of GNU Guix. ;;; @@ -104,7 +105,7 @@ interfacing MPD in the C, C++ & Objective C languages.") (define-public mpd (package (name "mpd") - (version "0.22.3") + (version "0.22.4") (source (origin (method url-fetch) (uri @@ -113,7 +114,7 @@ interfacing MPD in the C, C++ & Objective C languages.") "/mpd-" version ".tar.xz")) (sha256 (base32 - "1kvcarqijyw07bdqszjsn62plmncaid5az0q542p6rsygc1i501k")))) + "1l4x2jrv04hp4q9gyfg79g78bk68lrd6wd3hysl6y91rln9sj7l9")))) (build-system meson-build-system) (arguments `(#:configure-flags '("-Ddocumentation=enabled"))) @@ -228,7 +229,7 @@ terminal using ncurses.") (define-public ncmpcpp (package (name "ncmpcpp") - (version "0.9.1") + (version "0.9.2") (source (origin (method url-fetch) (uri @@ -236,7 +237,7 @@ terminal using ncurses.") version ".tar.bz2")) (sha256 (base32 - "0x35nd4v31sma8fliqdbn1nxpjyi8hv472318sfb3xbmr4wlm0fb")))) + "06rs734n120jp51hr0fkkhxrm7zscbhpdwls0m5b5cccghazdazs")))) (build-system gnu-build-system) (inputs `(("libmpdclient" ,libmpdclient) ("boost" ,boost) @@ -284,20 +285,22 @@ information about tracks being played to a scrobbler, such as Libre.FM.") (define-public python-mpd2 (package (name "python-mpd2") - (version "0.5.5") + (version "3.0.1") (source (origin (method url-fetch) (uri (pypi-uri "python-mpd2" version)) (sha256 (base32 - "0laypd7h1j14b4vrmiayqlzdsh2j5hc3zv4l0fqvbrbw9y6763ii")))) + "0fxssbmnv44m03shjyvbqslc69b0160702j2s0flgvdxjggrnbjj")))) (build-system python-build-system) (arguments '(#:phases (modify-phases %standard-phases (replace 'check - (lambda _ (invoke "python" "mpd_test.py")))))) - (native-inputs `(("python-mock" ,python-mock))) + (lambda _ (invoke "python" "-m" "pytest" "mpd/tests.py")))))) + (native-inputs + `(("python-mock" ,python-mock) + ("python-pytest" ,python-pytest))) (home-page "https://github.com/Mic92/python-mpd2") (synopsis "Python MPD client library") (description "Python-mpd2 is a Python library which provides a client @@ -310,7 +313,7 @@ interface for the Music Player Daemon.") (define-public sonata (package (name "sonata") - (version "1.7b1") + (version "1.7.0") (source (origin (method git-fetch) (uri (git-reference @@ -319,7 +322,7 @@ interface for the Music Player Daemon.") (file-name (git-file-name name version)) (sha256 (base32 - "1npbxlrg6k154qybfd250nq2p96kxdsdkj9wwnp93gljnii3g8wh")))) + "0rl8w7s2asff626clzfvyz987l2k4ml5dg417mqp9v8a962q0v2x")))) (build-system python-build-system) (arguments `(#:modules ((guix build gnu-build-system) @@ -460,3 +463,56 @@ of the music library will be created to provide a hierarchy of albums and artists along with albumart.") (home-page "https://github.com/cdrummond/cantata") (license license:gpl3+))) + +(define-public mcg + (package + (name "mcg") + (version "2.1.2") + (source + (origin + (method git-fetch) + (uri + (git-reference + (url "https://gitlab.com/coderkun/mcg") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "01iqxydssxyi4s644dwl64vm7xhn0szd99hdpywbipvb7kwp5196")))) + (build-system python-build-system) + (native-inputs + `(("glib:bin" ,glib "bin") + ("gobject-introspection" ,gobject-introspection) + ("pkg-config" ,pkg-config))) + (inputs + `(("avahi" ,avahi) + ("dconf" ,dconf) + ("gsettings-desktop-schemas" ,gsettings-desktop-schemas) + ("gtk+" ,gtk+) + ("python-pygobject" ,python-pygobject))) + (arguments + `(#:imported-modules ((guix build glib-or-gtk-build-system) + ,@%python-build-system-modules) + #:modules ((guix build python-build-system) + ((guix build glib-or-gtk-build-system) #:prefix glib-or-gtk:) + (guix build utils)) + #:phases + (modify-phases %standard-phases + (add-after 'install 'wrap-program + (lambda* (#:key outputs #:allow-other-keys) + (let ((prog (string-append (assoc-ref outputs "out") + "/bin/mcg"))) + (wrap-program prog + `("PYTHONPATH" = (,(getenv "PYTHONPATH"))) + `("GI_TYPELIB_PATH" = (,(getenv "GI_TYPELIB_PATH")))) + #t))) + (add-after 'wrap-program 'glib-or-gtk-wrap + (assoc-ref glib-or-gtk:%standard-phases 'glib-or-gtk-wrap))))) + (synopsis "Covergrid for the MPD") + (description + "mcg (CoverGrid) is a client for the Music Player Daemon (MPD), focusing +on albums instead of single tracks. It is not intended to be a replacement +for your favorite MPD client but an addition to get a better +album-experience.") + (home-page "https://gitlab.com/coderkun/mcg") + (license license:gpl3+))) diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index fc6c29855d..5902cf56ba 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -2296,7 +2296,7 @@ export.") (define-public pd (package (name "pd") - (version "0.51-3") + (version "0.51-4") (source (origin (method url-fetch) (uri @@ -2304,7 +2304,7 @@ export.") version ".src.tar.gz")) (sha256 (base32 - "10cqg387xdpiirak5v9y1lpvcds9bpqz61znx6d1m1hb45n513aw")))) + "1hgw1ciwr59f4f9s0h7c2l36wcsn3jsddhr1r9qj97vf64c1ynaj")))) (build-system gnu-build-system) (arguments (let ((wish (string-append "wish" (version-major+minor @@ -3481,8 +3481,8 @@ websites such as Libre.fm.") (synopsis "Bandcamp plugin for beets") (description "This plugin for beets automatically obtains tag data from @uref{Bandcamp, - https://bandcamp.com/}. It's also capable of getting song lyrics and album art - using the beets FetchArt plugin.") +https://bandcamp.com/}. It's also capable of getting song lyrics and album art +using the beets FetchArt plugin.") (license license:gpl2))) (define-public milkytracker @@ -4434,7 +4434,7 @@ standalone JACK client and an LV2 plugin is also available.") (define-public musescore (package (name "musescore") - (version "3.5.2") + (version "3.6") (source (origin (method git-fetch) @@ -4443,7 +4443,7 @@ standalone JACK client and an LV2 plugin is also available.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0yzps5xxa50cr2i5iv2ycjdywd0mcrdd6hx93l4p8lfljag3w3al")) + (base32 "0c9yf8irkism3ffzzpkx636wa6b1r1lgpsb2x63pr0gbi5ss5kyh")) (modules '((guix build utils))) (snippet ;; Remove unused libraries. diff --git a/gnu/packages/musl.scm b/gnu/packages/musl.scm index 466e472deb..e8c51036d7 100644 --- a/gnu/packages/musl.scm +++ b/gnu/packages/musl.scm @@ -28,14 +28,14 @@ (define-public musl (package (name "musl") - (version "1.2.1") + (version "1.2.2") (source (origin (method url-fetch) (uri (string-append "https://www.musl-libc.org/releases/" "musl-" version ".tar.gz")) (sha256 (base32 - "0jz8fzwgvfyjgxjbpw35ixdglp2apqjvp8m386f6yr4zacc6xbv8")))) + "1p8r6bac64y98ln0wzmnixysckq3crca69ys7p16sy9d04i975lv")))) (build-system gnu-build-system) (arguments `(#:tests? #f ; musl has no tests diff --git a/gnu/packages/nano.scm b/gnu/packages/nano.scm index 0caa918267..5729448e18 100644 --- a/gnu/packages/nano.scm +++ b/gnu/packages/nano.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2012 Nikita Karetnikov <nikita@karetnikov.org> ;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Rene Saavedra <rennes@openmailbox.org> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -30,13 +30,13 @@ (define-public nano (package (name "nano") - (version "5.4") + (version "5.5") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/nano/nano-" version ".tar.xz")) (sha256 - (base32 "1sc6xl9935k9s9clkv83hapijka4qknfnj6f15c3b1i2n84396gy")))) + (base32 "0jkyd3yzcidnvnj1k9bmplzlbd303x6xxblpp5np7zs1kfzq22rr")))) (build-system gnu-build-system) (inputs `(("gettext" ,gettext-minimal) diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index fad917a7c0..4e8d91256d 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -913,14 +913,14 @@ transparently check connection attempts against an access control list.") (define-public zeromq (package (name "zeromq") - (version "4.3.3") - (source (origin - (method url-fetch) - (uri (string-append "https://github.com/zeromq/libzmq/releases" - "/download/v" version "/zeromq-" version ".tar.gz")) - (sha256 - (base32 - "18km71p77jm1w7wly2a5mxvphjb0f2l6s08cg382x55f6zdqb4lx")))) + (version "4.3.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/zeromq/libzmq/releases" + "/download/v" version "/zeromq-" version ".tar.gz")) + (sha256 + (base32 "1rf3jmi36ms8jh2g5cvi253h43l6xdfq0r7mvp95va7mi4d014y5")))) (build-system gnu-build-system) (arguments '(#:configure-flags '("--disable-static"))) (home-page "https://zeromq.org") @@ -1664,7 +1664,7 @@ reusing frequently-requested web pages.") (define-public bwm-ng (package (name "bwm-ng") - (version "0.6.2") + (version "0.6.3") (source (origin (method git-fetch) @@ -1673,7 +1673,7 @@ reusing frequently-requested web pages.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0k906wb4pw3dcqpcwnni78lahzi3bva483f8c17sjykic7as4y5n")))) + (base32 "1gpp2l3w479h1w5skjra5xy0gxd24kvmk6i4psbkafnv2399la4k")))) (build-system gnu-build-system) (arguments `(#:phases @@ -3756,14 +3756,14 @@ thousands of connections is clearly realistic with today's hardware.") (define-public lldpd (package (name "lldpd") - (version "1.0.7") + (version "1.0.8") (source (origin (method url-fetch) (uri (string-append "https://media.luffy.cx/files/lldpd/lldpd-" version ".tar.gz")) (sha256 - (base32 "1qc7k83zpcq27hpjv1lmgrj4la2zy1gspwk5jas43j49siwr3xqx")) + (base32 "1vrxr8lgkw7q6ixaaili6ac7i0j0326194s498n2dxihdvkh1llq")) (modules '((guix build utils))) (snippet '(begin @@ -3849,15 +3849,14 @@ stamps.") (define-public nbd (package (name "nbd") - (version "3.20") + (version "3.21") (source (origin (method url-fetch) - (uri (string-append "mirror://sourceforge/nbd/nbd/3.20/nbd-" version - ".tar.xz")) + (uri (string-append "mirror://sourceforge/nbd/nbd/" version + "/nbd-" version ".tar.xz")) (sha256 - (base32 - "1kfnyx52nna2mnw264njk1dl2zc8m78sz031yp65mbmpi99v7qg0")))) + (base32 "1ydylvvayi4w2d08flji9q03sl7y8hn0c26vsay3nwwikprqls77")))) (build-system gnu-build-system) (inputs `(("glib" ,glib))) diff --git a/gnu/packages/node.scm b/gnu/packages/node.scm index 1ecf76b62a..77c47ec71f 100644 --- a/gnu/packages/node.scm +++ b/gnu/packages/node.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2018, 2019, 2020 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2021 Simon Tournier <zimon.toutoune@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -220,4 +221,5 @@ devices.") `(cons* "--shared" "--without-npm" ,flags)) ((#:phases phases '%standard-phases) `(modify-phases ,phases - (delete 'patch-npm-shebang))))))) + (delete 'patch-npm-shebang) + (delete 'patch-node-shebang))))))) diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm index 2df16e7cd2..8a91a79c36 100644 --- a/gnu/packages/ocaml.scm +++ b/gnu/packages/ocaml.scm @@ -18,6 +18,7 @@ ;;; Copyright © 2020 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 divoplade <d@divoplade.fr> ;;; Copyright © 2020 pukkamustard <pukkamustard@posteo.net> +;;; Copyright © 2021 aecepoglu <aecepoglu@fastmail.fm> ;;; ;;; This file is part of GNU Guix. ;;; @@ -390,6 +391,69 @@ repository-wide uninstallability checks.") ;; with static-linking exception (license license:lgpl2.1+))) +(define-public ocaml-down + (package + (name "ocaml-down") + (version "0.0.3") + (source + (origin + (method url-fetch) + (uri (string-append "https://erratique.ch/software/down/releases/down-" + version ".tbz")) + (sha256 + (base32 + "1nz2f5j17frgr2vrslcz9klmi6w9sm2vqwwwpi33ngcm3rgmsrlg")))) + (build-system ocaml-build-system) + (arguments + `(#:tests? #f ;no tests + #:phases + (modify-phases %standard-phases + (delete 'configure)) + #:build-flags + (list "build" "--lib-dir" + (string-append (assoc-ref %outputs "out") "/lib/ocaml/site-lib")))) + (native-inputs + `(("ocaml-findlib" ,ocaml-findlib) + ("ocamlbuild" ,ocamlbuild) + ("ocaml-topkg" ,ocaml-topkg) + ("opam" ,opam))) + (home-page "https://erratique.ch/software/down") + (synopsis "OCaml toplevel (REPL) upgrade") + (description "Down is an unintrusive user experience upgrade for the +@command{ocaml} toplevel (REPL). + +Simply load the zero dependency @code{down} library in the @command{ocaml} +toplevel and you get line edition, history, session support and identifier +completion and documentation with @command{ocp-index}. + +Add this to your @file{~/.ocamlinit}: + +@example +#use \"down.top\" +@end example + +You may also need to add this to your @file{~/.ocamlinit} and declare +the environment variable @code{OCAML_TOPLEVEL_PATH}: + +@example +let () = + try Topdirs.dir_directory (Sys.getenv \"OCAML_TOPLEVEL_PATH\") + with Not_found -> () +@end example + +OR + +@example +let () = String.split_on_char ':' (Sys.getenv \"OCAMLPATH\") + |> List.filter (fun x -> Filename.check_suffix x \"/site-lib\") + |> List.map (fun x -> x ^ \"/toplevel\") + (* remove the line below if you don't want to see the text + every time you start the toplevel *) + |> List.map (fun x -> Printf.printf \"adding directory %s\\n\" x; x) + |> List.iter Topdirs.dir_directory;; +@end example") + (license license:isc))) + (define-public ocaml-opam-file-format (package (name "ocaml-opam-file-format") @@ -2362,6 +2426,77 @@ string values and to directly encode characters in OCaml Buffer.t values.") the JSON data format. It can process JSON text without blocking on IO and without a complete in-memory representation of the data.") (license license:isc))) + +(define-public ocaml-ocp-indent + (package + (name "ocaml-ocp-indent") + (version "1.8.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/OCamlPro/ocp-indent") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1dvcl108ir9nqkk4mjm9xhhj4p9dx9bmg8bnms54fizs1x3x8ar3")))) + (build-system dune-build-system) + (arguments + `(#:test-target "tests" + #:build-flags (list "--profile=release"))) + (propagated-inputs + `(("ocaml-cmdliner" ,ocaml-cmdliner))) + (home-page "https://www.typerex.org/ocp-indent.html") + (synopsis "Tool to indent OCaml programs") + (description + "Ocp-indent is based on an approximate, tolerant OCaml parser +and a simple stack machine. Presets and configuration options are available, +with the possibility to set them project-wide. It supports the most common +syntax extensions, and it is extensible for others. + +This package includes: + +@itemize +@item An indentor program, callable from the command-line or from within editors, +@item Bindings for popular editors, +@item A library that can be directly used by editor writers, or just for + fault-tolerant and approximate parsing. +@end itemize") + (license license:lgpl2.1))) + +(define-public ocaml-ocp-index + (package + (name "ocaml-ocp-index") + (version "1.2.1") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/OCamlPro/ocp-index") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "08r7mxdnxmhff37fw4hmrpjgckgi5kaiiiirwp4rmdl594z0h9c8")))) + (build-system dune-build-system) + (arguments + `(#:package "ocp-index")) + (propagated-inputs + `(("ocaml-ocp-indent" ,ocaml-ocp-indent) + ("ocaml-re" ,ocaml-re) + ("ocaml-cmdliner" ,ocaml-cmdliner))) + (native-inputs + `(("ocaml-cppo" ,ocaml-cppo))) + (home-page "https://www.typerex.org/ocp-index.html") + (synopsis "Lightweight completion and documentation browsing for OCaml libraries") + (description "This package includes only the @code{ocp-index} library +and command-line tool.") + ;; All files in libs/ are GNU lgpl2.1 + ;; For static linking, clause 6 of LGPL is lifted + ;; All other files under GNU gpl3 + (license (list license:gpl3+ + license:lgpl2.1+)))) (define-public ocaml-ocurl (package diff --git a/gnu/packages/onc-rpc.scm b/gnu/packages/onc-rpc.scm index e4b03b7858..14ff13c038 100644 --- a/gnu/packages/onc-rpc.scm +++ b/gnu/packages/onc-rpc.scm @@ -92,7 +92,7 @@ IPv4 and IPv6. ONC RPC is notably used by the network file system (NFS).") (define-public rpcbind (package (name "rpcbind") - (version "0.2.4") + (version "1.2.5") (source (origin (method url-fetch) @@ -102,7 +102,7 @@ IPv4 and IPv6. ONC RPC is notably used by the network file system (NFS).") (patches (search-patches "rpcbind-CVE-2017-8779.patch")) (sha256 (base32 - "0rjc867mdacag4yqvs827wqhkh27135rp9asj06ixhf71m9rljh7")))) + "0ynszy5hpc7wbz8xngqwyhgbi9cay73y43izqhcmrcv375l61qrc")))) (build-system gnu-build-system) (arguments `(#:configure-flags diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index a6863dc12f..669f69e755 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2017, 2020 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Muriithi Frederick Muriuki <fredmanglis@gmail.com> ;;; Copyright © 2017, 2018 Oleg Pykhalov <go.wigust@gmail.com> @@ -9,7 +9,7 @@ ;;; Copyright © 2018, 2019 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2018 Sou Bunnbu <iyzsong@member.fsf.org> ;;; Copyright © 2018, 2019 Eric Bavier <bavier@member.fsf.org> -;;; Copyright © 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2019 Jonathan Brielmaier <jonathan.brielmaier@web.de> ;;; Copyright © 2020 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> @@ -132,8 +132,8 @@ ;; Note: the 'update-guix-package.scm' script expects this definition to ;; start precisely like this. (let ((version "1.2.0") - (commit "db42ee65bd657bae9b1a598cbdbe86079dc85f81") - (revision 9)) + (commit "d4a562ba7ac4549cc2d57eff7f440026a2045f45") + (revision 11)) (package (name "guix") @@ -149,7 +149,7 @@ (commit commit))) (sha256 (base32 - "1kizkw6cxh6mhc8kal2fglnhyp1i668b4ilqbxq72slbmf9jr9jl")) + "05gkymzfl0fdb2zjyvvn7w15arfnn7fgpbn3bch9r5yc7ldxg868")) (file-name (string-append "guix-" version "-checkout")))) (build-system gnu-build-system) (arguments @@ -301,6 +301,7 @@ $(prefix)/etc/init.d\n"))) (sqlite (assoc-ref inputs "guile-sqlite3")) (zlib (assoc-ref inputs "guile-zlib")) (lzlib (assoc-ref inputs "guile-lzlib")) + (zstd (assoc-ref inputs "guile-zstd")) (git (assoc-ref inputs "guile-git")) (bs (assoc-ref inputs "guile-bytestructures")) @@ -308,7 +309,7 @@ $(prefix)/etc/init.d\n"))) (gnutls (assoc-ref inputs "gnutls")) (locales (assoc-ref inputs "glibc-utf8-locales")) (deps (list gcrypt json sqlite gnutls git - bs ssh zlib lzlib)) + bs ssh zlib lzlib zstd)) (deps* ,@(if (%current-target-system) '(deps) '((cons avahi deps)))) @@ -362,6 +363,7 @@ $(prefix)/etc/init.d\n"))) ("guile-sqlite3" ,guile-sqlite3) ("guile-zlib" ,guile-zlib) ("guile-lzlib" ,guile-lzlib) + ("guile-zstd" ,guile-zstd) ("guile-ssh" ,guile-ssh) ("guile-git" ,guile-git) @@ -417,11 +419,19 @@ $(prefix)/etc/init.d\n"))) ("guile-ssh" ,guile-ssh) ("guile-git" ,guile-git) ("guile-zlib" ,guile-zlib) - ("guile-lzlib" ,guile-lzlib))) + ("guile-lzlib" ,guile-lzlib) + ("guile-zstd" ,guile-zstd))) (native-search-paths (list (search-path-specification (variable "GUIX_EXTENSIONS_PATH") - (files '("share/guix/extensions"))))) + (files '("share/guix/extensions"))) + + ;; (guix git) and (guix build download) honor this variable whose + ;; name comes from OpenSSL. + (search-path-specification + (variable "SSL_CERT_DIR") + (separator #f) ;single entry + (files '("etc/ssl/certs"))))) (home-page "https://www.gnu.org/software/guix/") (synopsis "Functional package manager for installed software packages and versions") @@ -1130,7 +1140,7 @@ outputs of those builds.") (define-public guix-jupyter (package (name "guix-jupyter") - (version "0.1.0") + (version "0.2.1") (home-page "https://gitlab.inria.fr/guix-hpc/guix-kernel") (source (origin (method git-fetch) @@ -1138,24 +1148,7 @@ outputs of those builds.") (commit (string-append "v" version)))) (sha256 (base32 - "01z7jjkc7r7lj6637rcgpz40v8xqqyfp6871h94yvcnwm7zy9h1n")) - (modules '((guix build utils))) - (snippet - '(begin - ;; Allow builds with Guile 3.0. - (substitute* "configure.ac" - (("^GUILE_PKG.*") - "GUILE_PKG([3.0 2.2])\n")) - - ;; Avoid name clash and build failure now that - ;; 'define-json-mapping' is also provided by Guile-JSON, as - ;; of version 4.3. - (substitute* (find-files "." "\\.scm$") - (("define-json-mapping") - "define-json-mapping*") - (("<=>") - "<->")) - #t)) + "1kqwfp5h95s6mirq5nbydsbmlhsinn32grz1ld5mbxvhl6sn2i0j")) (file-name (string-append "guix-jupyter-" version "-checkout")))) (build-system gnu-build-system) (arguments @@ -1348,14 +1341,14 @@ the boot loader configuration.") (define-public flatpak (package (name "flatpak") - (version "1.8.2") + (version "1.10.1") (source (origin (method url-fetch) (uri (string-append "https://github.com/flatpak/flatpak/releases/download/" version "/flatpak-" version ".tar.xz")) (sha256 - (base32 "1c45a0k7wx685n5b3ihv7dk0mm2kmwbw7cx8w5g2la62yxfn49kr")))) + (base32 "1dywvfpmszvp2wy5hvpzy8z6gz2gzmi9p302njp52p9vpx14ydf1")))) ;; Wrap 'flatpak' so that GIO_EXTRA_MODULES is set, thereby allowing GIO to ;; find the TLS backend in glib-networking. diff --git a/gnu/packages/password-utils.scm b/gnu/packages/password-utils.scm index bd411f59d0..2053457375 100644 --- a/gnu/packages/password-utils.scm +++ b/gnu/packages/password-utils.scm @@ -9,7 +9,7 @@ ;;; Copyright © 2016, 2019, 2020 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017, 2018 Clément Lassieur <clement@lassieur.org> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org> ;;; Copyright © 2017, 2019 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2017, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> @@ -123,7 +123,7 @@ human.") (define-public keepassxc (package (name "keepassxc") - (version "2.6.2") + (version "2.6.3") (source (origin (method url-fetch) @@ -131,7 +131,7 @@ human.") "/releases/download/" version "/keepassxc-" version "-src.tar.xz")) (sha256 - (base32 "0f3ygnjzjijqmmrvrslwsbnz208jgxp5bwy4p336w3bn1bggl6qh")))) + (base32 "1lgp20597dzj8qn8a71x3a6b549rvqybqx4haywwb09qiznvdq77")))) (build-system cmake-build-system) (arguments '(#:configure-flags '("-DWITH_XC_ALL=YES" diff --git a/gnu/packages/patches/freebayes-devendor-deps.patch b/gnu/packages/patches/freebayes-devendor-deps.patch new file mode 100644 index 0000000000..7e84666b85 --- /dev/null +++ b/gnu/packages/patches/freebayes-devendor-deps.patch @@ -0,0 +1,152 @@ +This patch is original to Guix, ongoing work to upstream bits as possible. + +From 9acc56db5e7469f5976be38b52ba4993de98ee38 Mon Sep 17 00:00:00 2001 +From: Efraim Flashner <efraim@flashner.co.il> +Date: Sun, 17 Jan 2021 13:27:17 +0200 +Subject: [PATCH] devendor-dependants + +--- + meson.build | 84 +++++++++++++++++++++++++++++++++++++++++------------ + 1 file changed, 66 insertions(+), 18 deletions(-) + +diff --git a/meson.build b/meson.build +index f6bf242..bded4af 100644 +--- a/meson.build ++++ b/meson.build +@@ -9,8 +9,13 @@ project('freebayes', ['cpp', 'c'], + + zlib_dep = dependency('zlib') + lzma_dep = dependency('liblzma') ++simde_dep = dependency('simde') + bzip2_dep = dependency('bz2lib', required: false) + htslib_dep = dependency('htslib', required : false) ++tabixpp_dep = dependency('tabixpp', required : false) ++fastahack_dep = dependency('fastahack', required : false) ++smithwaterman_dep = dependency('smithwaterman', required : false) ++vcflib_dep = dependency('libvcflib', required: false) + thread_dep = dependency('threads') + + if htslib_dep.found() +@@ -59,6 +64,56 @@ else + ] + endif + ++if tabixpp_dep.found() ++ tabixpp_includes = '' ++ tabixpp_src = [] ++else ++ tabixpp_includes = [ ++ 'vcflib/tabixpp', ++ ] ++ tabixpp_src = [ ++ 'vcflib/tabixpp/tabix.cpp', ++ ] ++endif ++ ++if vcflib_dep.found() ++ vcflib_includes = '' ++ vcflib_src = [] ++else ++ vcflib_includes = [ ++ 'vcflib/src', ++ 'vcflib/multichoose', ++ 'vcflib/filevercmp', ++ ] ++ vcflib_src = [ ++ 'vcflib/src/Variant.cpp', ++ ] ++endif ++ ++if fastahack_dep.found() ++ fastahack_src = [] ++else ++ fastahack_src = [ ++ 'vcflib/fastahack/Fasta.cpp', ++ 'vcflib/src/split.cpp', ++ ] ++endif ++ ++if smithwaterman_dep.found() ++ smithwaterman_includes = '' ++ smithwaterman_src = [] ++else ++ smithwaterman_includes = [ ++ 'vcflib/smithwaterman', ++ ] ++ smithwaterman_src = [ ++ 'vcflib/smithwaterman/SmithWatermanGotoh.cpp', ++ 'vcflib/smithwaterman/disorder.cpp', ++ 'vcflib/smithwaterman/Repeats.cpp', ++ 'vcflib/smithwaterman/LeftAlign.cpp', ++ 'vcflib/smithwaterman/IndelAllele.cpp', ++ ] ++endif + + + # +@@ -105,23 +160,18 @@ seqlib_src = [ + ] + + vcflib_src = [ +- 'vcflib/tabixpp/tabix.cpp', +- 'vcflib/src/Variant.cpp', +- 'vcflib/smithwaterman/SmithWatermanGotoh.cpp', +- 'vcflib/smithwaterman/disorder.cpp', +- 'vcflib/smithwaterman/Repeats.cpp', +- 'vcflib/smithwaterman/LeftAlign.cpp', +- 'vcflib/smithwaterman/IndelAllele.cpp', ++ vcflib_src, ++ tabixpp_src, ++ smithwaterman_src, + ] + + bamleftalign_src = [ + 'src/bamleftalign.cpp', + 'src/IndelAllele.cpp', + 'contrib/SeqLib/src/BamWriter.cpp', +- 'vcflib/fastahack/Fasta.cpp', +- 'vcflib/smithwaterman/LeftAlign.cpp', +- 'vcflib/smithwaterman/IndelAllele.cpp', +- 'vcflib/src/split.cpp', ++ fastahack_src, ++ smithwaterman_src, ++ vcflib_src, + 'src/LeftAlign.cpp', + ] + +@@ -134,11 +184,9 @@ incdir = include_directories( + 'ttmath', + 'contrib', + 'contrib/SeqLib', +- 'vcflib/src', +- 'vcflib/tabixpp', +- 'vcflib/smithwaterman', +- 'vcflib/multichoose', +- 'vcflib/filevercmp') ++ tabixpp_includes, ++ smithwaterman_includes, ++ vcflib_includes) + + c_args = ['-fpermissive','-w'] + cpp_args = ['-fpermissive','-w','-Wc++14-compat'] +@@ -152,7 +200,7 @@ executable('freebayes', + include_directories : incdir, + cpp_args : cpp_args, + c_args : c_args, +- dependencies: [zlib_dep, lzma_dep, htslib_dep, thread_dep], ++ dependencies: [zlib_dep, lzma_dep, simde_dep, htslib_dep, tabixpp_dep, smithwaterman_dep, vcflib_dep, thread_dep], + install: true + ) + +@@ -165,7 +213,7 @@ executable('bamleftalign', + include_directories : incdir, + cpp_args : cpp_args, + c_args : c_args, +- dependencies: [zlib_dep, lzma_dep, htslib_dep, thread_dep], ++ dependencies: [zlib_dep, lzma_dep, simde_dep, htslib_dep, tabixpp_dep, fastahack_dep, smithwaterman_dep, vcflib_dep, thread_dep], + install: true + ) + +-- +2.30.0 + diff --git a/gnu/packages/patches/guile-2.2-skip-so-test.patch b/gnu/packages/patches/guile-2.2-skip-so-test.patch new file mode 100644 index 0000000000..e7c2594e91 --- /dev/null +++ b/gnu/packages/patches/guile-2.2-skip-so-test.patch @@ -0,0 +1,23 @@ +Skip 'test-stack-overflow' that crashes when using QEMU transparent emulation. + +--- a/test-suite/standalone/Makefile.in 1970-01-01 01:00:01.000000000 +0100 ++++ b/test-suite/standalone/Makefile.in 2021-01-11 10:59:31.606269449 +0100 +@@ -102,8 +102,7 @@ + test-scm-to-latin1-string$(EXEEXT) test-scm-values$(EXEEXT) \ + test-scm-c-bind-keyword-arguments$(EXEEXT) \ + test-srfi-4$(EXEEXT) $(am__append_6) $(am__EXEEXT_1) \ +- test-smob-mark$(EXEEXT) test-smob-mark-race$(EXEEXT) \ +- test-stack-overflow ++ test-smob-mark$(EXEEXT) test-smob-mark-race$(EXEEXT) + check_PROGRAMS = test-num2integral$(EXEEXT) test-round$(EXEEXT) \ + test-foreign-object-c$(EXEEXT) test-list$(EXEEXT) \ + test-unwind$(EXEEXT) test-conversion$(EXEEXT) \ +@@ -1938,7 +1937,7 @@ + test-command-line-encoding test-command-line-encoding2 \ + test-language test-guild-compile $(am__append_3) \ + test-foreign-object-scm test-fast-slot-ref test-mb-regexp \ +- test-use-srfi $(am__append_5) test-stack-overflow ++ test-use-srfi $(am__append_5) + BUILT_SOURCES = $(am__append_2) + EXTRA_DIST = test-import-order-a.scm test-import-order-b.scm \ + test-import-order-c.scm test-import-order-d.scm \ diff --git a/gnu/packages/patches/idris-disable-test.patch b/gnu/packages/patches/idris-disable-test.patch new file mode 100644 index 0000000000..ec8c7c8451 --- /dev/null +++ b/gnu/packages/patches/idris-disable-test.patch @@ -0,0 +1,19 @@ +The "pkg010" test output depends on the version of optparse-applicative being +used. The expected output requires optparse-applicative >= 0.15.1.0. Skip +the test for now. + +--- idris-1.3.3/test/TestData.hs 2021-01-19 23:05:24.238958262 -0600 ++++ idris-1.3.3/test/TestData.hs 2021-01-19 23:10:33.314390997 -0600 +@@ -212,8 +212,10 @@ + ( 5, ANY ), + ( 6, ANY ), + ( 7, ANY ), +- ( 8, ANY ), +- ( 10, ANY )]), ++ ( 8, ANY )]), ++-- FIXME: Expected output depends on optparse-applicative version. ++-- See https://github.com/idris-lang/Idris-dev/issues/4896 ++-- ( 10, ANY )]), + ("prelude", "Prelude", + [ ( 1, ANY )]), + ("primitives", "Primitive types", diff --git a/gnu/packages/patches/ipxe-reproducible-geniso.patch b/gnu/packages/patches/ipxe-reproducible-geniso.patch new file mode 100644 index 0000000000..ff6aa1da94 --- /dev/null +++ b/gnu/packages/patches/ipxe-reproducible-geniso.patch @@ -0,0 +1,77 @@ +From 052d24d8217c51c572c2f6cbb4a687be2e8ba52d Mon Sep 17 00:00:00 2001 +From: Brice Waegeneire <brice@waegenei.re> +Date: Fri, 5 Jun 2020 14:38:43 +0200 +Subject: [PATCH] [geniso] Make it reproducible + +Some timestamps get embedded in the generated ISO, making it +unreproducible so we overwrite those timestamps to be at the UNIX epoch. +--- + src/util/geniso | 24 +++++++++++++++++++++--- + 1 file changed, 21 insertions(+), 3 deletions(-) + +diff --git a/src/util/geniso b/src/util/geniso +index ff090d4a..e032ffb0 100755 +--- a/src/util/geniso ++++ b/src/util/geniso +@@ -11,6 +11,13 @@ function help() { + echo " -o FILE save iso image to file" + } + ++function reset_timestamp() { ++ for f in "$1"/*; do ++ touch -t 197001010100 "$f" ++ done ++ touch -t 197001010100 "$1" ++} ++ + LEGACY=0 + FIRST="" + +@@ -37,8 +44,9 @@ if [ -z "${OUT}" ]; then + exit 1 + fi + +-# There should either be mkisofs or the compatible genisoimage program +-for command in genisoimage mkisofs; do ++# There should either be mkisofs, xorriso or the compatible genisoimage ++# program ++for command in xorriso genisoimage mkisofs; do + if ${command} --version >/dev/null 2>/dev/null; then + mkisofs=(${command}) + break +@@ -46,8 +54,10 @@ for command in genisoimage mkisofs; do + done + + if [ -z "${mkisofs}" ]; then +- echo "${0}: mkisofs or genisoimage not found, please install or set PATH" >&2 ++ echo "${0}: mkisofs, xorriso or genisoimage not found, please install or set PATH" >&2 + exit 1 ++elif [ "$mkisofs" = "xorriso" ]; then ++ mkisofs+=(-as mkisofs) + fi + + dir=$(mktemp -d bin/iso.dir.XXXXXX) +@@ -115,6 +125,8 @@ case "${LEGACY}" in + exit 1 + fi + ++ reset_timestamp "$dir" ++ + # generate the iso image + "${mkisofs[@]}" -b boot.img -output ${OUT} ${dir} + ;; +@@ -127,6 +139,12 @@ case "${LEGACY}" in + cp ${LDLINUX_C32} ${dir} + fi + ++ reset_timestamp "$dir" ++ ++ if [ "${mkisofs[0]}" = "xorriso" ]; then ++ mkisofs+=(-isohybrid-mbr "$SYSLINUX_MBR_DISK_PATH") ++ fi ++ + # generate the iso image + "${mkisofs[@]}" -b isolinux.bin -no-emul-boot -boot-load-size 4 -boot-info-table -output ${OUT} ${dir} + +-- +2.26.2 diff --git a/gnu/packages/patches/mutt-CVE-2021-3181.patch b/gnu/packages/patches/mutt-CVE-2021-3181.patch new file mode 100644 index 0000000000..df5214b052 --- /dev/null +++ b/gnu/packages/patches/mutt-CVE-2021-3181.patch @@ -0,0 +1,45 @@ +Fix CVE-2021-3181: + +https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2021-3181 + +Patch copied from upstream source repository: + +https://gitlab.com/muttmua/mutt/-/commit/c059e20ea4c7cb3ee9ffd3500ffe313ae84b2545 + +From c059e20ea4c7cb3ee9ffd3500ffe313ae84b2545 Mon Sep 17 00:00:00 2001 +From: Kevin McCarthy <kevin@8t8.us> +Date: Sun, 17 Jan 2021 10:40:37 -0800 +Subject: [PATCH] Fix memory leak parsing group address. + +When there was a group address terminator with no previous addresses, +an address would be allocated but not attached to the address list. + +Change this to only allocate when last exists. + +It would be more correct to not allocate at all unless we are inside a +group list, but I will address that in a separate commit to master. +--- + rfc822.c | 5 ++--- + 1 file changed, 2 insertions(+), 3 deletions(-) + +diff --git a/rfc822.c b/rfc822.c +index 7ff4eaa3..ced619f2 100644 +--- a/rfc822.c ++++ b/rfc822.c +@@ -587,11 +587,10 @@ ADDRESS *rfc822_parse_adrlist (ADDRESS *top, const char *s) + #endif + + /* add group terminator */ +- cur = rfc822_new_address (); + if (last) + { +- last->next = cur; +- last = cur; ++ last->next = rfc822_new_address (); ++ last = last->next; + } + + phraselen = 0; +-- +GitLab + diff --git a/gnu/packages/patches/podofo-cmake-3.12.patch b/gnu/packages/patches/podofo-cmake-3.12.patch deleted file mode 100644 index 0a3c19b21a..0000000000 --- a/gnu/packages/patches/podofo-cmake-3.12.patch +++ /dev/null @@ -1,19 +0,0 @@ -The build fails with cmake 3.12.0. This patch will be obsolete with the next -release. - -https://sourceforge.net/p/podofo/tickets/24/attachment/podofo-cmake-3.12.patch - - ---- a/test/TokenizerTest/CMakeLists.txt 2018-07-20 18:26:02.921494293 +0200 -+++ b/test/TokenizerTest/CMakeLists.txt 2018-07-20 18:34:53.727136443 +0200 -@@ -2,10 +2,3 @@ - TARGET_LINK_LIBRARIES(TokenizerTest ${PODOFO_LIB} ${PODOFO_LIB_DEPENDS}) - SET_TARGET_PROPERTIES(TokenizerTest PROPERTIES COMPILE_FLAGS "${PODOFO_CFLAGS}") - ADD_DEPENDENCIES(TokenizerTest ${PODOFO_DEPEND_TARGET}) -- --# Copy the test samples over to the build tree --ADD_CUSTOM_COMMAND( -- TARGET TokenizerTest -- POST_BUILD -- COMMAND "${CMAKE_COMMAND}" -E copy_directory "${CMAKE_CURRENT_SOURCE_DIR}/objects" "${CMAKE_CURRENT_BINARY_DIR}/objects" -- ) diff --git a/gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch b/gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch index 0947718059..0947718059 100644 --- a/gnu/packages/patches/r-httpuv-1.5.4-unvendor-libuv.patch +++ b/gnu/packages/patches/r-httpuv-1.5.5-unvendor-libuv.patch diff --git a/gnu/packages/patches/tipp10-disable-downloader.patch b/gnu/packages/patches/tipp10-disable-downloader.patch new file mode 100644 index 0000000000..4917a927f9 --- /dev/null +++ b/gnu/packages/patches/tipp10-disable-downloader.patch @@ -0,0 +1,165 @@ +https://salsa.debian.org/debian/tipp10/-/raw/debian/2.1.0-5/debian/patches/disable_downloaders.patch + +Author: Reiner Herrmann <reiner@reiner-h.de> +Description: Disable downloaders + This makes porting to Qt5 much easier, as QHttp is no longer available. + But the functionality was not enabled anyway or is no longer useful. + . + - checkversion.h/.cpp: + At startup (while loading settings), Tipp10 "phones home" to do an + update check (www.tipp10.com/update/version.tipp10v210). + For a packaged software and one that is no longer being developed, + this does not make much sense. + - updatedialog.h/.cpp: + Can download newer sqlite database (www.tipp10.com/update/sql.tipp10v210.utf), + but this file is no longer available on the server (404). + The update action has also not been enabled in the menu, so the update + functionality was currently not active: + widget/mainwindow.cpp:143: //fileMenu->addAction(updateAction); + - downloaddialog.h/.cpp: + Allows downloading lessons from user-specified location. + But the action (widget/startwidget.cpp -> lessonDownload) has not been part + of any menu, so it was also not in use. + +--- a/tipp10.pro ++++ b/tipp10.pro +@@ -15,7 +15,6 @@ + INCLUDEPATH += . + CONFIG += qt + QT += sql +-QT += network + RC_FILE += tipp10.rc + RESOURCES += tipp10.qrc + HEADERS += def/defines.h \ +@@ -36,15 +35,12 @@ + widget/settingspages.h \ + widget/lessondialog.h \ + widget/regexpdialog.h \ +- widget/downloaddialog.h \ + widget/lessonprintdialog.h \ + widget/lessonresult.h \ +- widget/updatedialog.h \ + widget/helpbrowser.h \ + widget/companylogo.h \ + widget/errormessage.h \ + widget/txtmessagedialog.h \ +- widget/checkversion.h \ + sql/connection.h \ + sql/lessontablesql.h \ + sql/chartablesql.h \ +@@ -70,15 +66,12 @@ + widget/settingspages.cpp \ + widget/lessondialog.cpp \ + widget/regexpdialog.cpp \ +- widget/downloaddialog.cpp \ + widget/lessonprintdialog.cpp \ + widget/lessonresult.cpp \ +- widget/updatedialog.cpp \ + widget/helpbrowser.cpp \ + widget/companylogo.cpp \ + widget/errormessage.cpp \ + widget/txtmessagedialog.cpp \ +- widget/checkversion.cpp \ + sql/lessontablesql.cpp \ + sql/chartablesql.cpp \ + sql/trainingsql.cpp \ +--- a/widget/mainwindow.cpp ++++ b/widget/mainwindow.cpp +@@ -41,11 +41,9 @@ + + #include "mainwindow.h" + #include "settingsdialog.h" +-#include "updatedialog.h" + #include "def/defines.h" + #include "def/errordefines.h" + #include "errormessage.h" +-#include "checkversion.h" + + MainWindow::MainWindow() { + trainingStarted = false; +@@ -214,8 +212,8 @@ + } + + void MainWindow::showUpdate() { +- UpdateDialog updateDialog(this); +- updateDialog.exec(); ++ //UpdateDialog updateDialog(this); ++ //updateDialog.exec(); + // Fill lesson list after online update + startWidget->fillLessonList(false); + } +@@ -486,6 +484,7 @@ + settings.endGroup(); + + settings.beginGroup("general"); ++#if 0 + if (settings.value("check_new_version", true).toBool()) { + + QDate lastVersionCheck = settings.value("last_version_check").toDate(); +@@ -499,6 +498,7 @@ + } + settings.setValue("last_version_check", today); + } ++#endif + settings.endGroup(); + } + +--- a/widget/settingspages.cpp ++++ b/widget/settingspages.cpp +@@ -581,7 +581,7 @@ + + // Layout of group box vertical + QVBoxLayout *layout = new QVBoxLayout; +- layout->addWidget(checkNewVersion); ++ //layout->addWidget(checkNewVersion); + layout->addSpacing(1); + layout->addWidget(checkNativeStyle); + layout->setMargin(16); +@@ -610,7 +610,6 @@ + checkIntelligence->setChecked(settings.value("check_toggle_intelligence", true).toBool()); + checkLimitLesson->setChecked(settings.value("check_limit_lesson", true).toBool()); + checkLessonPublish->setChecked(settings.value("check_lesson_publish", true).toBool()); +- checkNewVersion->setChecked(settings.value("check_new_version", true).toBool()); + checkNativeStyle->setChecked(settings.value("check_native_style", false).toBool()); + settings.endGroup(); + } +@@ -636,7 +635,6 @@ + settings.setValue("check_limit_lesson", checkLimitLesson->isChecked()); + settings.setValue("check_lesson_publish", checkLessonPublish->isChecked()); + settings.setValue("check_native_style", checkNativeStyle->isChecked()); +- settings.setValue("check_new_version", checkNewVersion->isChecked()); + settings.endGroup(); + + return requireRestart; +--- a/widget/startwidget.cpp ++++ b/widget/startwidget.cpp +@@ -43,12 +43,10 @@ + + #include "startwidget.h" + #include "sql/startsql.h" +-#include "updatedialog.h" + #include "def/defines.h" + #include "def/errordefines.h" + #include "errormessage.h" + #include "lessondialog.h" +-#include "downloaddialog.h" + #include "illustrationdialog.h" + #include "txtmessagedialog.h" + +@@ -1048,7 +1046,7 @@ + } + + void StartWidget::clickDownloadLesson() { +- ++#if 0 + QStringList lessonData; + + DownloadDialog downloadDialog(&lessonData, this); +@@ -1083,6 +1081,7 @@ + } + } + } ++#endif + } + + void StartWidget::clickEditLesson() { diff --git a/gnu/packages/patches/tipp10-qt5.patch b/gnu/packages/patches/tipp10-qt5.patch new file mode 100644 index 0000000000..34ad5cd708 --- /dev/null +++ b/gnu/packages/patches/tipp10-qt5.patch @@ -0,0 +1,69 @@ +https://salsa.debian.org/debian/tipp10/-/raw/debian/2.1.0-5/debian/patches/qt5.patch + +Author: Reiner Herrmann <reiner@reiner-h.de> +Description: Port to Qt5 +Bug-Debian: https://bugs.debian.org/875207 + +--- a/tipp10.pro ++++ b/tipp10.pro +@@ -14,6 +14,7 @@ + DEPENDPATH += . + INCLUDEPATH += . + CONFIG += qt ++QT += widgets multimedia printsupport + QT += sql + RC_FILE += tipp10.rc + RESOURCES += tipp10.qrc +--- a/main.cpp ++++ b/main.cpp +@@ -24,7 +24,6 @@ + ****************************************************************/ + + #include <QApplication> +-#include <QPlastiqueStyle> + #include <QString> + #include <QSettings> + #include <QCoreApplication> +@@ -212,7 +211,7 @@ + + // Set windows style + if (!useNativeStyle) { +- app.setStyle("plastique"); ++ app.setStyle("fusion"); + } + + // Translation +--- a/games/abcrainwidget.cpp ++++ b/games/abcrainwidget.cpp +@@ -235,8 +235,7 @@ + charballs.last()->wind = (qrand() % 8) + 2; + charballs.last()->rad = 0; + +- chartext.append(new QGraphicsTextItem(QString(characterTemp), +- charballs.last(), scene)); ++ chartext.append(new QGraphicsTextItem(QString(characterTemp), charballs.last())); + chartext.last()->setFont(QFont("Courier", 16, 100)); + chartext.last()->setPos(-(chartext.last()->boundingRect().width() / 2), -(chartext.last()->boundingRect().height() / 2)); + +--- a/sql/chartablesql.cpp ++++ b/sql/chartablesql.cpp +@@ -137,7 +137,7 @@ + sortColumn(4); + + headerview->setStretchLastSection(true); +- headerview->setResizeMode(QHeaderView::Interactive); ++ headerview->setSectionResizeMode(QHeaderView::Interactive); + headerview->setSortIndicatorShown(true); + + // Resize the columns +--- a/sql/lessontablesql.cpp ++++ b/sql/lessontablesql.cpp +@@ -202,7 +202,7 @@ + sortColumn(-1); + + headerview->setStretchLastSection(true); +- headerview->setResizeMode(QHeaderView::Interactive); ++ headerview->setSectionResizeMode(QHeaderView::Interactive); + headerview->setSortIndicatorShown(true); + + // Resize the columns diff --git a/gnu/packages/patches/vcflib-use-shared-libraries.patch b/gnu/packages/patches/vcflib-use-shared-libraries.patch deleted file mode 100644 index e198ec663c..0000000000 --- a/gnu/packages/patches/vcflib-use-shared-libraries.patch +++ /dev/null @@ -1,135 +0,0 @@ -This patch is a combination of many of the patches from Debian: -https://sources.debian.org/src/libvcflib/1.0.1+dfsg-3/debian/patches/ - ---- - Makefile | 63 +++++++++++--------------------------------------------- - 1 file changed, 12 insertions(+), 51 deletions(-) - -diff --git a/Makefile b/Makefile -index 6b13350..be85f22 100644 ---- a/Makefile -+++ b/Makefile -@@ -114,43 +114,25 @@ BIN_SOURCES = src/vcfecho.cpp \ - src/vcfnull2ref.cpp \ - src/vcfinfosummarize.cpp - --# when we can figure out how to build on mac --# src/vcfsom.cpp -- - #BINS = $(BIN_SOURCES:.cpp=) - BINS = $(addprefix $(BIN_DIR)/,$(notdir $(BIN_SOURCES:.cpp=))) - SHORTBINS = $(notdir $(BIN_SOURCES:.cpp=)) - --TABIX = tabixpp/tabix.o --FASTAHACK = fastahack/Fasta.o --SMITHWATERMAN = smithwaterman/SmithWatermanGotoh.o --REPEATS = smithwaterman/Repeats.o --INDELALLELE = smithwaterman/IndelAllele.o --DISORDER = smithwaterman/disorder.o --LEFTALIGN = smithwaterman/LeftAlign.o --FSOM = fsom/fsom.o - FILEVERCMP = filevercmp/filevercmp.o - --# Work out how to find htslib --# Use the one we ship in tabixpp unless told otherwise by the environment --HTS_LIB ?= $(VCF_LIB_LOCAL)/tabixpp/htslib/libhts.a --HTS_INCLUDES ?= -I$(VCF_LIB_LOCAL)/tabixpp/htslib --HTS_LDFLAGS ?= -L$(VCF_LIB_LOCAL)/tabixpp/htslib -lhts -lbz2 -lm -lz -llzma -pthread -- -- --INCLUDES = $(HTS_INCLUDES) -I$(INC_DIR) --LDFLAGS = -L$(LIB_DIR) -lvcflib $(HTS_LDFLAGS) -lpthread -lz -lm -llzma -lbz2 -+INCLUDES = -I$(INC_DIR) $(shell pkg-config --cflags htslib fastahack smithwaterman tabixpp) -+LDFLAGS = -L$(LIB_DIR) -lvcflib -lpthread -lz -lstdc++ -lm -llzma -lbz2 $(shell pkg-config --libs htslib fastahack smithwaterman tabixpp) - - - --all: $(OBJECTS) $(BINS) scriptToBin -+all: $(OBJECTS) $(BINS) scriptToBin libvcflib.a - - scriptToBin: $(BINS) - $(CP) scripts/* $(BIN_DIR) - - GIT_VERSION += $(shell git describe --abbrev=4 --dirty --always) - --CXXFLAGS = -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -+CXXFLAGS = -Ofast -D_FILE_OFFSET_BITS=64 -std=c++0x -fPIC - #CXXFLAGS = -O2 - #CXXFLAGS = -pedantic -Wall -Wshadow -Wpointer-arith -Wcast-qual - -@@ -168,7 +150,7 @@ profiling: - gprof: - $(MAKE) CXXFLAGS="$(CXXFLAGS) -pg" all - --$(OBJECTS): $(SOURCES) $(HEADERS) $(TABIX) multichoose pre $(SMITHWATERMAN) $(FILEVERCMP) $(FASTAHACK) -+$(OBJECTS): $(SOURCES) $(HEADERS) multichoose pre $(FILEVERCMP) - $(CXX) -c -o $@ src/$(*F).cpp $(INCLUDES) $(LDFLAGS) $(CXXFLAGS) && $(CP) src/*.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ - - multichoose: pre -@@ -177,39 +159,22 @@ multichoose: pre - intervaltree: pre - cd intervaltree && $(MAKE) && $(CP) *.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ - --$(TABIX): pre -- cd tabixpp && INCLUDES="$(HTS_INCLUDES)" LIBPATH="-L. $(HTS_LDFLAGS)" HTSLIB="$(HTS_LIB)" $(MAKE) && $(CP) *.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ -- --$(SMITHWATERMAN): pre -- cd smithwaterman && $(MAKE) && $(CP) *.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ && $(CP) *.o $(VCF_LIB_LOCAL)/$(OBJ_DIR)/ -- --$(DISORDER): $(SMITHWATERMAN) -- --$(REPEATS): $(SMITHWATERMAN) -- --$(LEFTALIGN): $(SMITHWATERMAN) -- --$(INDELALLELE): $(SMITHWATERMAN) -- --$(FASTAHACK): pre -- cd fastahack && $(MAKE) && $(CP) *.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ && $(CP) Fasta.o $(VCF_LIB_LOCAL)/$(OBJ_DIR)/ -- --#$(FSOM): --# cd fsom && $(CXX) $(CXXFLAGS) -c fsom.c -lm -- - $(FILEVERCMP): pre - cd filevercmp && make && $(CP) *.h* $(VCF_LIB_LOCAL)/$(INC_DIR)/ && $(CP) *.o $(VCF_LIB_LOCAL)/$(INC_DIR)/ - - $(SHORTBINS): pre - $(MAKE) $(BIN_DIR)/$@ - --$(BINS): $(BIN_SOURCES) libvcflib.a $(OBJECTS) $(SMITHWATERMAN) $(FASTAHACK) $(DISORDER) $(LEFTALIGN) $(INDELALLELE) $(SSW) $(FILEVERCMP) pre intervaltree -+$(BINS): $(BIN_SOURCES) libvcflib.so $(OBJECTS) $(SSW) $(FILEVERCMP) pre intervaltree - $(CXX) src/$(notdir $@).cpp -o $@ $(INCLUDES) $(LDFLAGS) $(CXXFLAGS) -DVERSION=\"$(GIT_VERSION)\" - --libvcflib.a: $(OBJECTS) $(SMITHWATERMAN) $(REPEATS) $(FASTAHACK) $(DISORDER) $(LEFTALIGN) $(INDELALLELE) $(SSW) $(FILEVERCMP) $(TABIX) pre -- ar rs libvcflib.a $(OBJECTS) smithwaterman/sw.o $(FASTAHACK) $(SSW) $(FILEVERCMP) $(TABIX) -+libvcflib.a: $(OBJECTS) $(SSW) $(FILEVERCMP) pre -+ ar rs libvcflib.a $(OBJECTS) $(SSW) $(FILEVERCMP) - $(CP) libvcflib.a $(LIB_DIR) - -+libvcflib.so: $(OBJECTS) $(SSW) $(FILEVERCMP) pre -+ $(CXX) -shared -o libvcflib.so $(OBJECTS) $(SSW) $(FILEVERCMP) -+ $(CP) libvcflib.so $(LIB_DIR) - - test: $(BINS) - @prove -Itests/lib -w tests/*.t -@@ -230,16 +195,12 @@ clean: - $(RM) $(BINS) $(OBJECTS) - $(RM) ssw_cpp.o ssw.o - $(RM) libvcflib.a -+ $(RM) libvcflib.so - $(RM) -r $(BIN_DIR) - $(RM) -r $(LIB_DIR) - $(RM) -r $(INC_DIR) - $(RM) -r $(OBJ_DIR) -- $(MAKE) clean -C tabixpp -- $(MAKE) clean -C smithwaterman -- $(MAKE) clean -C fastahack - $(MAKE) clean -C multichoose -- $(MAKE) clean -C fsom -- $(MAKE) clean -C libVCFH - $(MAKE) clean -C test - $(MAKE) clean -C filevercmp - $(MAKE) clean -C intervaltree --- -2.28.0 - diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index 224bd792bd..d03379c113 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -13,7 +13,7 @@ ;;; Copyright © 2017, 2018 Leo Famulari <leo@famulari.name> ;;; Copyright © 2017 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2017, 2018 Rene Saavedra <pacoon@protonmail.com> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2019 Ben Sturmfels <ben@sturm.com.au> ;;; Copyright © 2019,2020 Hartmut Goebel <h.goebel@crazy-compilers.com> @@ -648,15 +648,14 @@ interaction.") (define-public podofo (package (name "podofo") - (version "0.9.6") + (version "0.9.7") (source (origin (method url-fetch) (uri (string-append "mirror://sourceforge/podofo/podofo/" version "/podofo-" version ".tar.gz")) (sha256 (base32 - "0wj0y4zcmj4q79wrn3vv3xq4bb0vhhxs8yifafwy9f2sjm83c5p9")) - (patches (search-patches "podofo-cmake-3.12.patch")))) + "1f0yvkx6nf99fp741w2y706d8bs9824x1z2gqm3rdy5fv8bfgwkw")))) (build-system cmake-build-system) (native-inputs `(("cppunit" ,cppunit) @@ -671,8 +670,8 @@ interaction.") ("openssl" ,openssl) ("zlib" ,zlib))) (arguments - `(#:configure-flags '("-DPODOFO_BUILD_SHARED=ON" - "-DPODOFO_BUILD_STATIC=ON") + `(#:configure-flags + (list "-DPODOFO_BUILD_SHARED=ON") #:phases (modify-phases %standard-phases (add-before 'configure 'patch diff --git a/gnu/packages/perl.scm b/gnu/packages/perl.scm index 896a474bba..da05f7a95b 100644 --- a/gnu/packages/perl.scm +++ b/gnu/packages/perl.scm @@ -11141,6 +11141,39 @@ package takes some liberties with the SDL API, and attempts to adhere to the spirit of both the SDL and Perl.") (license license:lgpl2.1))) +(define-public perl-sgmls + (package + (name "perl-sgmls") + (version "1.1") + (source (origin + (method url-fetch) + (uri (string-append "mirror://cpan/authors/id/R/RA/RAAB/SGMLSpm-" + version ".tar.gz")) + (sha256 + (base32 + "1gdjf3mcz2bxir0l9iljxiz6qqqg3a9gg23y5wjg538w552r432m")))) + (build-system perl-build-system) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'install 'wrap-script + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (site (string-append out "/lib/perl5/site_perl"))) + (with-directory-excursion out + (rename-file "bin/sgmlspl.pl" "bin/sgmlspl") + (wrap-program "bin/sgmlspl" + `("PERL5LIB" suffix (,site)))) + #t)))))) + (native-inputs + `(("perl-module-build" ,perl-module-build))) + (home-page "https://metacpan.org/release/RAAB/SGMLSpm-1.1") + (synopsis "Perl module for processing SGML parser output") + (description "This package contains @code{SGMLS.pm}, a perl5 class library +for parsing the output from an SGML parser such as OpenSP. It also includes +the @command{sgmlspl} command, an Perl script showcasing how the library can +be used.") + (license license:gpl2+))) + (define-public perl-shell-command (package (name "perl-shell-command") diff --git a/gnu/packages/printers.scm b/gnu/packages/printers.scm index e03582c47b..9ab9da37fb 100644 --- a/gnu/packages/printers.scm +++ b/gnu/packages/printers.scm @@ -1,7 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2018 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2019, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -21,13 +20,9 @@ (define-module (gnu packages printers) #:use-module (guix packages) #:use-module (guix git-download) - #:use-module (guix build-system cmake) #:use-module (guix build-system gnu) #:use-module ((guix licenses) #:prefix license:) - #:use-module (gnu packages compression) - #:use-module (gnu packages cups) #:use-module (gnu packages libusb) - #:use-module (gnu packages ghostscript) #:use-module (gnu packages pkg-config) #:use-module (gnu packages qt)) @@ -73,70 +68,3 @@ with Graphtec and Sihouette plotting cutters using an SVG file as its input.") (home-page "http://robocut.org") (license license:gpl3+))) - -(define-public brlaser - (let ((commit "9d7ddda8383bfc4d205b5e1b49de2b8bcd9137f1") - (revision "1")) - (package - (name "brlaser") - (version (git-version "6" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/pdewacht/brlaser") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1drh0nk7amn9a8wykki4l9maqa4vy7vwminypfy1712alwj31nd4")))) - (build-system cmake-build-system) - (arguments - `(#:configure-flags - (list (string-append "-DCUPS_DATA_DIR=" - (assoc-ref %outputs "out") - "/share/cups") - (string-append "-DCUPS_SERVER_BIN=" - (assoc-ref %outputs "out") - "/lib/cups")))) - (inputs - `(("ghostscript" ,ghostscript) - ("cups" ,cups) - ("zlib" ,zlib))) - (home-page "https://github.com/pdewacht/brlaser") - (synopsis "Brother laser printer driver") - (description "Brlaser is a CUPS driver for Brother laser printers. This -driver is known to work with these printers: - -@enumerate -@item Brother DCP-1510 series -@item Brother DCP-1600 series -@item Brother DCP-7030 -@item Brother DCP-7040 -@item Brother DCP-7055 -@item Brother DCP-7055W -@item Brother DCP-7060D -@item Brother DCP-7065DN -@item Brother DCP-7080 -@item Brother DCP-L2500D series -@item Brother DCP-L2520D series -@item Brother DCP-L2540DW series -@item Brother HL-1110 series -@item Brother HL-1200 series -@item Brother HL-2030 series -@item Brother HL-2140 series -@item Brother HL-2220 series -@item Brother HL-2270DW series -@item Brother HL-5030 series -@item Brother HL-L2300D series -@item Brother HL-L2320D series -@item Brother HL-L2340D series -@item Brother HL-L2360D series -@item Brother MFC-1910W -@item Brother MFC-7240 -@item Brother MFC-7360N -@item Brother MFC-7365DN -@item Brother MFC-7840W -@item Brother MFC-L2710DW series -@item Lenovo M7605D -@end enumerate") - (license license:gpl2+)))) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 2c471fba58..9f5e3ba559 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -8260,14 +8260,14 @@ PEP 8.") (define-public python-pep517 (package (name "python-pep517") - (version "0.8.2") + (version "0.9.1") (source (origin (method url-fetch) (uri (pypi-uri "pep517" version)) (sha256 (base32 - "17m2bcabx3sr5wjalgzppfx5xahqrwm12zq58h68mm482b7rjqcf")))) + "0zqidxah03qpnp6zkg3zd1kmd5f79hhdsfmlc0cldaniy80qddxf")))) (build-system python-build-system) (arguments '(#:phases @@ -18762,14 +18762,14 @@ implemented using @code{ctypes}.") (define-public python-userspacefs (package (name "python-userspacefs") - (version "2.0.2") + (version "2.0.3") (source (origin (method url-fetch) (uri (pypi-uri "userspacefs" version)) (sha256 (base32 - "0ayfcz9pjwq7h3ws0qas71842s1wm7dxlmg8dccxl2j6yavpv83f")))) + "1v6saf62ml3j63adalvlkj4iavxjbsbapl20b21mn73p7kvn4ayf")))) (build-system python-build-system) (propagated-inputs `(("python-fusepyng" ,python-fusepyng))) diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm index 526054c896..012f9a106f 100644 --- a/gnu/packages/qt.scm +++ b/gnu/packages/qt.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> -;;; Copyright © 2015, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2015, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Nikita <nikita@n0.is> ;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be> @@ -343,16 +343,31 @@ developers using C++ or QML, a CSS & JavaScript like language.") ;; Qt 5: assembler error; see <http://hydra.gnu.org/build/112526>. (supported-systems (delete "mips64el-linux" %supported-systems)))) +(define (qt5-urls component version) + "Return a list of URLs for VERSION of the Qt5 COMPONENT." + ;; We can't use a mirror:// scheme because these URLs are not exact copies: + ;; the layout differs between them. + (list (string-append "https://download.qt.io/official_releases/qt/" + (version-major+minor version) "/" version + "/submodules/" component "-everywhere-src-" + version ".tar.xz") + (string-append "https://download.qt.io/archive/qt/" + (version-major+minor version) "/" version + "/submodules/" component "-everywhere-src-" + version ".tar.xz") + (let ((directory (string-append "qt5" (string-drop component 2)))) + (string-append "http://sources.buildroot.net/" directory "/" + component "-everywhere-src-" version ".tar.xz")) + (string-append "https://distfiles.macports.org/qt5/" + component "-everywhere-src-" version ".tar.xz"))) + (define-public qtbase (package (name "qtbase") (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1y70libf2x52lpbqvhz10lpk7nyl1ajjwzjxly9pjdpfj4jsv7wh")) @@ -610,10 +625,7 @@ developers using C++ or QML, a CSS & JavaScript like language.") (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0pjqrdmd1991x9h4rl8sf81pkd89hfd5h1a2gp3fjw96pk0w5hwb")))) @@ -685,10 +697,7 @@ HostData=lib/qt5 (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1msk8a0z8rr16hkp2fnv668vf6wayiydqgc2mcklaa04rv3qb0mz")) @@ -726,10 +735,7 @@ support for MNG, TGA, TIFF and WBMP image formats."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0gkfzj195v9flwljnqpdz3a532618yn4h2577nlsai56x4p7053h")))) @@ -750,10 +756,7 @@ from within Qt 5."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1ypj5jpa31rlx8yfw3y9jia212lfnxvnqkvygs6ihjf3lxi23skn")))) @@ -781,10 +784,7 @@ xmlpatternsvalidator."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0lancdn7y0lrlmyn5cbdm0izd5yprvd5n77nhkb7a3wl2sbx0066")))) @@ -825,10 +825,7 @@ with JavaScript and C++."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "185zci61ip1wpjrygcw2m6v55lvninc0b8y2p3jh6qgpf5w35003")))) @@ -849,10 +846,7 @@ with Bluetooth and NFC."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0gr399fn5n8j3m9d3vv01vcbr1cb7pw043j04cnnxzrlvn2jvd50")))) @@ -876,10 +870,7 @@ consume data received from the server, or both."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0fa81r7bn1mf9ynwsx524a55dx1q0jb4vda6j48ssb4lx7wi201z")))) @@ -909,10 +900,7 @@ recognition API for devices."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1xbd6kc7i0iablqdkvfrajpi32cbq7j6ajbfyyyalcai1s0mhdqc")) @@ -960,10 +948,7 @@ set of plugins for interacting with pulseaudio and GStreamer."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1ddfx4nak16xx0zh1kl836zxvpbixmmjyplsmfmg65pqkwi34dqr")))) @@ -1015,10 +1000,7 @@ compositor libraries."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "17gp5qzg4wdg8qlxk2p3mh8x1vk33rf33wic3fy0cws193bmkiar")))) @@ -1049,10 +1031,7 @@ interacting with serial ports from within Qt."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "125x6756fjpldqy6wbw6cg7ngjh2016aiq92bchh719z1mf7xsxf")))) @@ -1084,10 +1063,7 @@ and others."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1h9y634phvvk557mhmf9z4lmxr41rl8x9mqy2lzp31mk8ffffzqj")))) @@ -1108,10 +1084,7 @@ popular web engines, Qt WebKit 2 and Qt WebEngine."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0ihlnhv8ldkqz82v3j7j22lrhk17b6ghra8sx85y2agd2ysq5rw1")))) @@ -1144,10 +1117,7 @@ OpenGL ES 2.0 and can be used in HTML5 canvas elements"))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1rw1wibmbxlj6xc86qs3y8h42al1vczqiksyxzaylxs9gqb4d7xy")))) @@ -1197,10 +1167,7 @@ positioning and geolocation plugins."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1k618f7v6jaj0ygy8d7jvgb8zjr47sn55kiskbdkkizp3z7d12f1")))) @@ -1225,10 +1192,7 @@ that helps in Qt development."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0gk74hk488k9ldacxbxcranr3arf8ifqg8kz9nm1rgdgd59p36d2")) @@ -1249,10 +1213,7 @@ ECMAScript and Qt."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1dczakl868mg0lnwpf082jjc5976ycn879li1vqlgw5ihirzp4y3")))) @@ -1273,10 +1234,7 @@ can be used to build complete interfaces in Qt Quick."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "06c9vrwvbjmzapmfa25y34lgjkzg57xxbm92nr6wkv5qykjnq6v7")))) @@ -1298,10 +1256,7 @@ not available."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1r6zfc0qga2ax155js7c8y5rx6vgayf582s921j09mb797v6g3gc")))) @@ -1325,10 +1280,7 @@ coloring, and many more."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "0p07bg93fdfn4gr2kv38qgnws5znhswajrxdfs8xc9l3i7vi2xn7")))) @@ -1355,10 +1307,7 @@ and mobile applications targeting TV-like form factors."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1p5771b9hnpchfcdgy0zkhwg09a6xq88934aggp0rij1k85mkfb0")) @@ -1386,10 +1335,7 @@ also contains functionality to support data models and executable content."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "09rjx53519dfk4qj2gbn3vlxyriasyb747wpg1p11y7jkwqhs4l7")))) @@ -1406,10 +1352,7 @@ purchasing goods and services."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "049x7z8zcp9jixmdv2fjscy2ggpd6za9hkdbb2bqp2mxjm0hwxg0")))) @@ -1433,10 +1376,7 @@ selecting one of the charts themes.") (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1zdn3vm0nfy9ny7c783aabp3mhlnqhi9fw2rljn7ibbksmsnasi2")))) @@ -1460,10 +1400,7 @@ customized by using themes or by adding custom items and labels to them.") (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "11fdgacv4syr8bff2vdw7rb0dg1gcqpdf37hm3pn31d6z91frhpw")))) @@ -1489,10 +1426,7 @@ implementation of OAuth and OAuth2 authenticathon methods for Qt."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1hngbp0vkr35rpsrac7b9vx6f360v8v2g0fffzm590l8j2ybd0b7")))) @@ -1526,10 +1460,7 @@ processes or computers."))) (version "5.15.2") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1xc3x3ghnhgchsg1kgj156yg69wn4rwjx8r28i1jd05hxjggn468")))) @@ -1591,10 +1522,7 @@ using the Enchant spell-checking library.") (source (origin (method url-fetch) - (uri (string-append "https://download.qt.io/official_releases/qt/" - (version-major+minor version) "/" version - "/submodules/" name "-everywhere-src-" - version ".tar.xz")) + (uri (qt5-urls name version)) (sha256 (base32 "1q4idxdm81sx102xc12ixj0xpfx52d6vwvs3jpapnkyq8c7cmby8")) diff --git a/gnu/packages/radio.scm b/gnu/packages/radio.scm index 0a4b623360..95e86e560a 100644 --- a/gnu/packages/radio.scm +++ b/gnu/packages/radio.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2017, 2018, 2019, 2020 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2019, 2020 Christopher Howard <christopher@librehacker.com> ;;; Copyright © 2019, 2020 Evan Straw <evan.straw99@gmail.com> -;;; Copyright © 2020 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2020, 2021 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2020 Danny Milosavljevic <dannym@scratchpost.org> ;;; Copyright © 2020 Charlie Ritter <chewzerita@posteo.net> ;;; Copyright © 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> @@ -538,7 +538,7 @@ to the fix block above. (define-public gqrx (package (name "gqrx") - (version "2.13.5") + (version "2.14.4") (source (origin (method git-fetch) @@ -547,7 +547,7 @@ to the fix block above. (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "168wjad5g0ka555hwsciwbj7fqx1c89q59hq1yxj8aiyp5kfcahx")))) + (base32 "0m4ncydihz4n4i80c252vk3c5v672yab1jv85n6ndn7a92xv3ilq")))) (build-system qt-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1057,7 +1057,7 @@ their position, altitude, speed, etc.") (define-public rtl-433 (package (name "rtl-433") - (version "20.02") + (version "20.11") (source (origin (method git-fetch) @@ -1066,7 +1066,7 @@ their position, altitude, speed, etc.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "11991xky9gawkragdyg27qsf7kw5bhlg7ygvf3fn7ng00x4xbh1z")))) + (base32 "093bxjxkg7yf78wqj5gpijbfa2p05ny09qqsj84kzi1svnzsa369")))) (build-system cmake-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1117,3 +1117,33 @@ modes: @item X10 @end itemize") (license license:gpl2+))) + +(define-public nanovna-saver + (package + (name "nanovna-saver") + (version "0.3.8") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/NanoVNA-Saver/nanovna-saver") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0z83rwpnbbs1n74mx8dgh1d1crp90mannj9vfy161dmy4wzc5kpv")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython))) + (inputs + `(("python-numpy" ,python-numpy) + ("python-pyqt" ,python-pyqt) + ("python-pyserial" ,python-pyserial) + ("python-scipy" ,python-scipy))) + (arguments + '(#:tests? #f)) + (home-page "https://github.com/NanoVNA-Saver/nanovna-saver") + (synopsis "GUI for NanoVNA devices") + (description + "NanoVNA-Saver is a tool for reading, displaying and saving data from the +NanoVNA vector network analyzers.") + (license license:gpl3+))) diff --git a/gnu/packages/rdf.scm b/gnu/packages/rdf.scm index be426e102a..0841c1fd8d 100644 --- a/gnu/packages/rdf.scm +++ b/gnu/packages/rdf.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2013, 2014, 2015 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2015, 2016, 2018 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2020 Alexandros Theodotou <alex@zrythm.org> ;;; Copyright © 2020 Pjotr Prins <pjotr.guix@thebird.nl> @@ -268,14 +268,14 @@ and triple stores.") (define-public serd (package (name "serd") - (version "0.30.6") + (version "0.30.8") (source (origin (method url-fetch) (uri (string-append "https://download.drobilla.net/serd-" version ".tar.bz2")) (sha256 (base32 - "1vrprliknw9s0mz99dk7qf8i8xx38dd173q6b60332wxcm6cg8pm")))) + "11zs53yx40mv62vxsl15mvdh7s17y5v6lgcgahdvzxgnan7w8bk7")))) (build-system waf-build-system) (arguments `(#:tests? #f ; no check target @@ -302,14 +302,14 @@ ideal (e.g. in LV2 implementations or embedded applications).") (define-public sord (package (name "sord") - (version "0.16.6") + (version "0.16.8") (source (origin (method url-fetch) (uri (string-append "https://download.drobilla.net/sord-" version ".tar.bz2")) (sha256 (base32 - "0i4x49ckdi1d24kwp6rmnf2mz78sncdpq22xhv9kclq8frxg4yk6")))) + "052y7zllrg0bzyky2rmrrwnnf16p6bk7q40rq9mgm0mzm8p9sa3w")))) (build-system waf-build-system) (arguments `(#:tests? #f ; no check target diff --git a/gnu/packages/ruby.scm b/gnu/packages/ruby.scm index c5b1af79d3..b811cbd2c4 100644 --- a/gnu/packages/ruby.scm +++ b/gnu/packages/ruby.scm @@ -5020,10 +5020,16 @@ both CSS3 selector and XPath 1.0 support.") "1pnyh44qycnf9mzi1j6fywd5fkskv3x7nmsqrrws0rjn5dd4ayfp")))) (build-system ruby-build-system) (arguments - `(#:test-target "spec")) + `(#:test-target "spec" + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'remove-git-ls-files + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "Rakefile" + (("git ls-files") "find . -type f")) + #t))))) (native-inputs - `(("ruby-rspec" ,ruby-rspec) - ("git" ,git))) + `(("ruby-rspec" ,ruby-rspec))) (synopsis "Retrieve the source code for Ruby methods") (description "Method_source retrieves the source code for Ruby methods. Additionally, it can extract source code from Proc and Lambda objects or just diff --git a/gnu/packages/rust-apps.scm b/gnu/packages/rust-apps.scm index 3745a8377c..e7a0c4fab2 100644 --- a/gnu/packages/rust-apps.scm +++ b/gnu/packages/rust-apps.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2020 Gabriel Arazas <foo.dogsquared@gmail.com> ;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2021 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2021 Sharlatan Hellseher <sharlatanus@gmail.ccom> ;;; ;;; This file is part of GNU Guix. ;;; @@ -33,6 +34,8 @@ #:use-module (gnu packages crates-io) #:use-module (gnu packages crates-graphics) #:use-module (gnu packages documentation) + #:use-module (gnu packages fontutils) + #:use-module (gnu packages gtk) #:use-module (gnu packages jemalloc) #:use-module (gnu packages pcre) #:use-module (gnu packages pkg-config) @@ -90,6 +93,47 @@ highlighting for a large number of languages, git integration, and automatic paging.") (license (list license:expat license:asl2.0)))) +(define-public drill + (package + (name "drill") + (version "0.7.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "drill" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "1m73d7rzi0p5c1hn0081d2235kcyapdza7h0vqf5jhnirpnjn793")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-async-trait" ,rust-async-trait-0.1) + ("rust-clap" ,rust-clap-2) + ("rust-colored" ,rust-colored-1) + ("rust-csv" ,rust-csv-1) + ("rust-futures" ,rust-futures-0.3) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-linked-hash-map" ,rust-linked-hash-map-0.5) + ("rust-num-cpus" ,rust-num-cpus-1) + ("rust-rand" ,rust-rand-0.7) + ("rust-regex" ,rust-regex-1) + ("rust-reqwest" ,rust-reqwest-0.10) + ("rust-serde" ,rust-serde-1) + ("rust-serde-json" ,rust-serde-json-1) + ("rust-tokio" ,rust-tokio-0.2) + ("rust-url" ,rust-url-2) + ("rust-yaml-rust" ,rust-yaml-rust-0.4)))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("openssl" ,openssl))) + (home-page "https://github.com/fcsonline/drill") + (synopsis "HTTP load testing application") + (description + "Drill is a HTTP load testing application written in Rust inspired by +Ansible syntax. Benchmark files can be written in YAML.") + (license license:gpl3))) + (define-public exa (package (name "exa") @@ -458,46 +502,117 @@ gitignore rules.") (base32 "13jzbmjz1bmmfr0i80hw6ar484mgabx3hbpb2ynhk0ddqi0yr58m")))))) +(define-public tectonic + (package + (name "tectonic") + (version "0.4.1") + (source + (origin + (method url-fetch) + (uri (crate-uri "tectonic" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "16fm2bfvfizrydmirzf0bhr1fidb5slcbvr6150and8yqr8jc4lf")))) + (build-system cargo-build-system) + (arguments + `(#:cargo-inputs + (("rust-app-dirs2" ,rust-app-dirs2-2) + ("rust-atty" ,rust-atty-0.2) + ("rust-byte-unit" ,rust-byte-unit-4) + ("rust-cbindgen" ,rust-cbindgen-0.16) + ("rust-cc" ,rust-cc-1) + ("rust-cfg-if" ,rust-cfg-if-1) + ("rust-error-chain" ,rust-error-chain-0.12) + ("rust-flate2" ,rust-flate2-1) + ("rust-fs2" ,rust-fs2-0.4) + ("rust-headers" ,rust-headers-0.2) + ("rust-lazy-static" ,rust-lazy-static-1) + ("rust-libc" ,rust-libc-0.2) + ("rust-md-5" ,rust-md-5-0.9) + ("rust-pkg-config" ,rust-pkg-config-0.3) + ("rust-regex" ,rust-regex-1) + ("rust-reqwest" ,rust-reqwest-0.9) + ("rust-serde" ,rust-serde-1) + ("rust-sha2" ,rust-sha2-0.9) + ("rust-structopt" ,rust-structopt-0.3) + ("rust-tectonic-cfg-support" ,rust-tectonic-cfg-support-0.1) + ("rust-tectonic-xdv" ,rust-tectonic-xdv-0.1) + ("rust-tempfile" ,rust-tempfile-3) + ("rust-termcolor" ,rust-termcolor-1) + ("rust-toml" ,rust-toml-0.5) + ("rust-vcpkg" ,rust-vcpkg-0.2) + ("rust-zip" ,rust-zip-0.5)) + #:cargo-development-inputs + (("rust-filetime" ,rust-filetime-0.2) + ("rust-futures" ,rust-futures-0.1) + ("rust-headers" ,rust-headers-0.2) + ("rust-hyper" ,rust-hyper-0.12) + ("rust-tempfile" ,rust-tempfile-3) + ("rust-tokio" ,rust-tokio-0.1)) + #:phases + (modify-phases %standard-phases + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/" ,name "-" ,version))) + (copy-recursively "docs/src" doc) + #t)))))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("fontconfig" ,fontconfig) + ("harfbuzz" ,harfbuzz) + ("openssl" ,openssl) + ("zlib" ,zlib))) + (home-page "https://tectonic-typesetting.github.io/") + (synopsis "Complete, embeddable TeX/LaTeX engine") + (description + "This package provides a modernized, complete, embeddable +TeX/LaTeX engine. Tectonic is forked from the XeTeX extension to the +classic Web2C implementation of TeX and uses the TeXLive distribution +of support files.") + (license license:expat))) + (define-public tokei (package (name "tokei") - (version "10.1.1") + (version "12.1.2") (source - (origin - (method url-fetch) - (uri (crate-uri "tokei" version)) - (file-name - (string-append name "-" version ".tar.gz")) - (sha256 - (base32 - "07f5laqw2k9l3k8wrg9h8p2m5d9hkfxngyacwrn3vs7mlnw8l81m")))) + (origin + (method url-fetch) + (uri (crate-uri "tokei" version)) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 "000w549v1bpw7r57xw656p40ywf1gimvxxx5cjnri2js0xg927x4")))) (build-system cargo-build-system) (arguments `(#:cargo-inputs - (("rust-clap" ,rust-clap-2) - ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.4) - ("rust-dirs" ,rust-dirs-2.0) + (("rust-aho-corasick" ,rust-aho-corasick-0.7) + ("rust-clap" ,rust-clap-2) + ("rust-crossbeam-channel" ,rust-crossbeam-channel-0.5) + ("rust-dashmap" ,rust-dashmap-4) + ("rust-dirs" ,rust-dirs-3) ("rust-encoding-rs-io" ,rust-encoding-rs-io-0.1) - ("rust-env-logger" ,rust-env-logger-0.7) + ("rust-env-logger" ,rust-env-logger-0.8) ("rust-grep-searcher" ,rust-grep-searcher-0.1) ("rust-hex" ,rust-hex-0.4) ("rust-ignore" ,rust-ignore-0.4) ("rust-log" ,rust-log-0.4) + ("rust-num-format" ,rust-num-format-0.4) + ("rust-once-cell" ,rust-once-cell-1) + ("rust-parking-lot" ,rust-parking-lot-0.11) ("rust-rayon" ,rust-rayon-1) + ("rust-regex" ,rust-regex-1) ("rust-serde" ,rust-serde-1) - ("rust-serde-cbor" ,rust-serde-cbor-0.10) - ("rust-serde-derive" ,rust-serde-derive-1) + ("rust-serde-cbor" ,rust-serde-cbor-0.11) ("rust-serde-json" ,rust-serde-json-1) ("rust-serde-yaml" ,rust-serde-yaml-0.8) + ("rust-tera" ,rust-tera-1) ("rust-term-size" ,rust-term-size-0.3) ("rust-toml" ,rust-toml-0.5)) #:cargo-development-inputs - (("rust-git2" ,rust-git2-0.11) - ("rust-handlebars" ,rust-handlebars-2.0) - ("rust-ignore" ,rust-ignore-0.4) - ("rust-lazy-static" ,rust-lazy-static-1) + (("rust-git2" ,rust-git2-0.13) ("rust-regex" ,rust-regex-1) - ("rust-serde-json" ,rust-serde-json-1) ("rust-tempfile" ,rust-tempfile-3)))) (native-inputs `(("pkg-config" ,pkg-config))) diff --git a/gnu/packages/samba.scm b/gnu/packages/samba.scm index 679e2ab869..13e03d7ac7 100644 --- a/gnu/packages/samba.scm +++ b/gnu/packages/samba.scm @@ -443,51 +443,48 @@ key-value pair databases and a real LDAP database.") (license lgpl3+))) (define-public ppp - ;; This git commit contains unreleased fixes for CVE-2020-8597. - (let ((revision "1") - (commit "8d45443bb5c9372b4c6a362ba2f443d41c5636af")) - (package - (name "ppp") - (version (git-version "2.4.8" revision commit)) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/paulusmack/ppp") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "06cf8fb84l3h2zy5da4j7k2j1qjv2gfqn986sf43xgj75605aks2")))) - (build-system gnu-build-system) - (arguments - '(#:tests? #f ; no check target - #:make-flags '("CC=gcc") - #:phases - (modify-phases %standard-phases - (add-before 'configure 'patch-Makefile - (lambda* (#:key inputs #:allow-other-keys) - (let ((libc (assoc-ref inputs "libc")) - (openssl (assoc-ref inputs "openssl")) - (libpcap (assoc-ref inputs "libpcap"))) - (substitute* "pppd/Makefile.linux" - (("/usr/include/crypt\\.h") - (string-append libc "/include/crypt.h")) - (("/usr/include/openssl") - (string-append openssl "/include/openssl")) - (("/usr/include/pcap-bpf.h") - (string-append libpcap "/include/pcap-bpf.h"))) - #t)))))) - (inputs - `(("libpcap" ,libpcap) - ("openssl" ,(@ (gnu packages tls) openssl)))) - (synopsis "Implementation of the Point-to-Point Protocol") - (home-page "https://ppp.samba.org/") - (description - "The Point-to-Point Protocol (PPP) provides a standard way to establish + (package + (name "ppp") + (version "2.4.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/paulusmack/ppp") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1bhhksdclsnkw54a517ndrw55q5zljjbh9pcqz1z4a2z2flxpsgk")))) + (build-system gnu-build-system) + (arguments + '(#:tests? #f ; no check target + #:make-flags '("CC=gcc") + #:phases + (modify-phases %standard-phases + (add-before 'configure 'patch-Makefile + (lambda* (#:key inputs #:allow-other-keys) + (let ((libc (assoc-ref inputs "libc")) + (openssl (assoc-ref inputs "openssl")) + (libpcap (assoc-ref inputs "libpcap"))) + (substitute* "pppd/Makefile.linux" + (("/usr/include/crypt\\.h") + (string-append libc "/include/crypt.h")) + (("/usr/include/openssl") + (string-append openssl "/include/openssl")) + (("/usr/include/pcap-bpf.h") + (string-append libpcap "/include/pcap-bpf.h"))) + #t)))))) + (inputs + `(("libpcap" ,libpcap) + ("openssl" ,(@ (gnu packages tls) openssl)))) + (synopsis "Implementation of the Point-to-Point Protocol") + (home-page "https://ppp.samba.org/") + (description + "The Point-to-Point Protocol (PPP) provides a standard way to establish a network connection over a serial link. At present, this package supports IP and IPV6 and the protocols layered above them, such as TCP and UDP.") - ;; pppd, pppstats and pppdump are under BSD-style notices. - ;; some of the pppd plugins are GPL'd. - ;; chat is public domain. - (license (list bsd-3 bsd-4 gpl2+ public-domain))))) + ;; pppd, pppstats and pppdump are under BSD-style notices. + ;; some of the pppd plugins are GPL'd. + ;; chat is public domain. + (license (list bsd-3 bsd-4 gpl2+ public-domain)))) diff --git a/gnu/packages/scribus.scm b/gnu/packages/scribus.scm index f699824a05..9a6b75333b 100644 --- a/gnu/packages/scribus.scm +++ b/gnu/packages/scribus.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2017, 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com> -;;; Copyright © 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2020, 2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -46,6 +46,26 @@ #:use-module (gnu packages tls) #:use-module (gnu packages xml)) +(define podofo-for-scribus + (package + (inherit podofo) + (version "0.9.6") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/podofo/podofo/" version + "/podofo-" version ".tar.gz")) + (sha256 + (base32 "0wj0y4zcmj4q79wrn3vv3xq4bb0vhhxs8yifafwy9f2sjm83c5p9")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix the build with CMake 3.12.0. + (substitute* "test/TokenizerTest/CMakeLists.txt" + (("\\$\\{CMAKE_COMMAND\\}") + "true")) + #t)))))) + (define-public scribus (package (name "scribus") @@ -96,7 +116,9 @@ ("libxml2" ,libxml2) ("libzmf" ,libzmf) ("openssl" ,openssl) - ("podofo" ,podofo) + ;; Scribus 1.5.6.1 does not build with later versions, see + ;; <https://bugs.scribus.net/view.php?id=16427>. + ("podofo" ,podofo-for-scribus) ("poppler" ,poppler) ("python" ,python) ; need Python library ("qtbase" ,qtbase) diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm index 8293d562b3..e261e64a7f 100644 --- a/gnu/packages/search.scm +++ b/gnu/packages/search.scm @@ -49,14 +49,14 @@ (define-public xapian (package (name "xapian") - (version "1.4.17") + (version "1.4.18") ;; Note: When updating Xapian, remember to update xapian-bindings below. (source (origin (method url-fetch) (uri (string-append "https://oligarchy.co.uk/xapian/" version "/xapian-core-" version ".tar.xz")) (sha256 - (base32 "0bjpaavdckl4viznr8gbq476fvg648sj4rks2vacmc51vrb8bsxm")))) + (base32 "0xsb4ihf3p767f0zx9p4janwni6r9sg5j6lry0002i8hmnsdnv8r")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) ("util-linux" ,util-linux "lib"))) @@ -94,7 +94,7 @@ rich set of boolean query operators.") "/xapian-bindings-" version ".tar.xz")) (sha256 (base32 - "1lzb739hjfy9ih2c0ircra50h4jr48wxq1fal7sai963w28mv9j8")))) + "13ziql8027glgihgvnbsa75vkcn82g83mbihj60zf0njj170clpy")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--with-python3") diff --git a/gnu/packages/shells.scm b/gnu/packages/shells.scm index 0b4edbe452..5ee7add8b1 100644 --- a/gnu/packages/shells.scm +++ b/gnu/packages/shells.scm @@ -814,14 +814,14 @@ Shell (pdksh).") (define-public oil (package (name "oil") - (version "0.8.5") + (version "0.8.6") (source (origin (method url-fetch) (uri (string-append "https://www.oilshell.org/download/oil-" version ".tar.gz")) (sha256 - (base32 "02pw7x76jzfmk8fqs1k0pz7vwnkal458p93j4if0w0hg36xyx1j2")))) + (base32 "1g7ij3va9rlapfyl3zd08g2iffcr6b0n8b0zrp0bnxwvvnysl95h")))) (build-system gnu-build-system) (arguments `(#:strip-binaries? #f ; strip breaks the binary diff --git a/gnu/packages/skarnet.scm b/gnu/packages/skarnet.scm index 1fd7d91eb9..51be1a30e8 100644 --- a/gnu/packages/skarnet.scm +++ b/gnu/packages/skarnet.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2015 Claes Wallin <claes.wallin@greatsinodevelopment.com> ;;; Copyright © 2016 Eric Le Bihan <eric.le.bihan.dev@free.fr> ;;; Copyright © 2017 Z. Ren <zren@dlut.edu.cn> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2020 Oleg Pykhalov <go.wigust@gmail.com> ;;; ;;; This file is part of GNU Guix. @@ -30,14 +30,14 @@ (define-public skalibs (package (name "skalibs") - (version "2.9.3.0") + (version "2.10.0.0") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/skalibs/skalibs-" version ".tar.gz")) (sha256 - (base32 "0i1vg3bh0w3bpj7cv0kzs6q9v2dd8wa2by8h8j39fh1qkl20f6ph")))) + (base32 "122xipbxh6awsfdfj37mjc8f3g8ndmmmps4gw5s43mya8wgzib61")))) (build-system gnu-build-system) (arguments '(#:tests? #f ; no tests exist @@ -62,14 +62,14 @@ and file system operations. It is used by all skarnet.org software.") (define-public execline (package (name "execline") - (version "2.6.1.1") + (version "2.7.0.0") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/execline/execline-" version ".tar.gz")) (sha256 - (base32 "0mmsnai3bkyhng0cxdz6bf7d6b7kbsxs4p39m63215lz6kq0hhrr")))) + (base32 "0kl74yix60msgw8k3shhp9ymm80n91yxxqckixj5qbbhmylpnpqd")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs))) (arguments @@ -104,14 +104,14 @@ complexity."))) (define-public s6 (package (name "s6") - (version "2.9.2.0") + (version "2.10.0.0") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/s6/s6-" version ".tar.gz")) (sha256 - (base32 "1pfxx50shncg2s47ic4kp02jh1cxfjq75j3mnxjagyzzz0mbfg9n")))) + (base32 "0xzqrd0m3wjklmw1w3gjw5dcdxnhgvxv2r5wd6m2ismw2jprr9k0")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs) ("execline" ,execline))) @@ -150,14 +150,14 @@ functionality with a very small amount of code."))) (define-public s6-dns (package (name "s6-dns") - (version "2.3.3.0") + (version "2.3.4.0") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/s6-dns/s6-dns-" version ".tar.gz")) (sha256 - (base32 "05l74ciflaahlgjpvy1g0slydwqclxgybxrkpvdddd2yzwc5kira")))) + (base32 "03s94bc1y2yf0i3v3gh27xz3l2ycf246nb29mrf1zm4v9kdff5fn")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs))) (arguments @@ -179,14 +179,14 @@ as an alternative to the BIND, djbdns or other DNS clients."))) (define-public s6-networking (package (name "s6-networking") - (version "2.3.2.0") + (version "2.4.0.0") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/s6-networking/s6-networking-" version ".tar.gz")) (sha256 - (base32 "04kxj579pm4n5ifc3gfmrqj74vqqfqc82d69avzkn3yrc226mqxv")))) + (base32 "1yqykwfl5jnkxgr6skfj5kzd896pknij0hi5m7lj0r18jpfs5zgq")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs) ("execline" ,execline) @@ -222,14 +222,14 @@ clock synchronization."))) (define-public s6-rc (package (name "s6-rc") - (version "0.5.1.4") + (version "0.5.2.1") (source (origin (method url-fetch) (uri (string-append "https://skarnet.org/software/s6-rc/s6-rc-" version ".tar.gz")) (sha256 - (base32 "07q0ixpwsmj1v08l6vd7qywdg33zzn8vhm21kvp179bapdzs8sdg")))) + (base32 "02pszbi440wagx2qp8aqj9mv5wm2qisw9lkq7mbnbnxxw9azlhi8")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs) ("execline" ,execline) @@ -263,7 +263,7 @@ environment."))) (define-public s6-portable-utils (package (name "s6-portable-utils") - (version "2.2.3.0") + (version "2.2.3.1") (source (origin (method url-fetch) @@ -271,7 +271,7 @@ environment."))) "https://skarnet.org/software/s6-portable-utils/s6-portable-utils-" version ".tar.gz")) (sha256 - (base32 "063zwifigg2b3wsixdcz4h9yvr6fkqssvx0iyfsprjfmm1yapfi9")))) + (base32 "1ks1ch5v3p2z8y8wp5fmzzgjrqn2l5sj1sgfp8vv6wy8psd8mrj3")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs))) (arguments @@ -295,7 +295,7 @@ systems and other constrained environments, but they work everywhere."))) (define-public s6-linux-init (package (name "s6-linux-init") - (version "1.0.5.1") + (version "1.0.6.0") (source (origin (method url-fetch) @@ -303,7 +303,7 @@ systems and other constrained environments, but they work everywhere."))) "https://skarnet.org/software/s6-linux-init/s6-linux-init-" version ".tar.gz")) (sha256 - (base32 "1gkbjldf4f7i3vmv251f9hw7ma09nh8zkwjmqi2gplpkf7z3i34p")))) + (base32 "0kzif3dqhm7h4h7c6npzdbcy7w756222g8ysw116fgb8j385dr6w")))) (build-system gnu-build-system) (inputs `(("execline" ,execline) @@ -341,7 +341,7 @@ all the details."))) (define-public s6-linux-utils (package (name "s6-linux-utils") - (version "2.5.1.3") + (version "2.5.1.4") (source (origin (method url-fetch) @@ -349,7 +349,7 @@ all the details."))) "https://skarnet.org/software/s6-linux-utils/s6-linux-utils-" version ".tar.gz")) (sha256 - (base32 "0wbv02zxaami88xbj2zg63kspz05bbplswg0c6ncb5g9khf52wa4")))) + (base32 "02gxzc9igid2kf2rvm3v6kc9806mpjmdq7cpanv4cml0ip68vbfq")))) (build-system gnu-build-system) (inputs `(("skalibs" ,skalibs))) (arguments diff --git a/gnu/packages/statistics.scm b/gnu/packages/statistics.scm index c45544f52e..77cd629882 100644 --- a/gnu/packages/statistics.scm +++ b/gnu/packages/statistics.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Ricardo Wurmus <rekado@elephly.net> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015 Vicente Vera Parra <vicentemvp@gmail.com> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2016, 2017, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> @@ -160,14 +160,14 @@ simulation not wholly unlike BUGS. JAGS was written with three aims in mind: (define-public libxls (package (name "libxls") - (version "1.5.3") + (version "1.6.2") (source (origin (method url-fetch) (uri (string-append "https://github.com/libxls/libxls/releases/download/" "v" version "/libxls-" version ".tar.gz")) (sha256 - (base32 "0rl513wpq5qh7wkmdk4g9c68rzffv3mcbz48p4xyg4969zrx8lnm")))) + (base32 "0wg3ymr43aa1j3scyl9x83b2xgg7wilzpil0dj91a8dzji6w7b2x")))) (build-system gnu-build-system) (home-page "https://github.com/libxls/libxls") (synopsis "Read binary (.xls) Excel spreadsheet files") @@ -522,14 +522,14 @@ code for possible problems.") (define-public r-foreign (package (name "r-foreign") - (version "0.8-80") + (version "0.8-81") (source (origin (method url-fetch) (uri (cran-uri "foreign" version)) (sha256 (base32 - "0wjdi3qn9famsxmpdyyahidaid0yhxlpx4ad9k8vrxhxd6xspasp")))) + "0b4rca1bl8xxna05057hchbwfmgjgx0n140szabpc0raizqzks0s")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/foreign") (synopsis "Read data stored by other statistics software") @@ -586,14 +586,14 @@ also flexible enough to handle most nonstandard requirements.") (define-public r-matrix (package (name "r-matrix") - (version "1.2-18") + (version "1.3-2") (source (origin (method url-fetch) (uri (cran-uri "Matrix" version)) (sha256 (base32 - "06b1rc1vq65b271f2wpzhqkvhng8hwwnvjflzxkng50i52603zzp")))) + "0ccmmfd0lbvrhzjzr28k4yfawiywa1m4ics34zyi3rqq23csa2wm")))) (properties `((upstream-name . "Matrix"))) (build-system r-build-system) (propagated-inputs @@ -608,13 +608,13 @@ and operations on them using LAPACK and SuiteSparse.") (define-public r-nlme (package (name "r-nlme") - (version "3.1-150") + (version "3.1-151") (source (origin (method url-fetch) (uri (cran-uri "nlme" version)) (sha256 - (base32 "18qmbzrmrham8hbdlzsca7w46c5iqighx1ymzggll5s86c4s7kvr")))) + (base32 "1jl6x0glpyszy6bkbcggm3f10jl4kldhs5q561k85xcbssx2dim2")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -1112,13 +1112,13 @@ using just two functions: melt and dcast (or acast).") (define-public r-ggplot2 (package (name "r-ggplot2") - (version "3.3.2") + (version "3.3.3") (source (origin (method url-fetch) (uri (cran-uri "ggplot2" version)) (sha256 - (base32 "0wsib5qpzn4d0w1ss3x158xmrawkms8vvsfvr3mh40pvd8g2ibad")))) + (base32 "1k136k1sr6dq1xvx6gs6gzji6hbnnwnsb5qivsxrblfv90irxhj5")))) (build-system r-build-system) (propagated-inputs `(("r-digest" ,r-digest) @@ -1175,14 +1175,14 @@ agnes cluster diagrams.") (define-public r-gdtools (package (name "r-gdtools") - (version "0.2.2") + (version "0.2.3") (source (origin (method url-fetch) (uri (cran-uri "gdtools" version)) (sha256 (base32 - "08njzin0c6biw62j5w30r9j85vr1m2cg4hmv5d76nym860yrlqjf")))) + "1p3ip0qwpg8f63jfx0b8vbac6l20ddid8xvxzkfi6i858pybnawp")))) (build-system r-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1268,14 +1268,16 @@ evaluation (NSE) in R.") (define-public r-dbi (package (name "r-dbi") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "DBI" version)) (sha256 (base32 - "1r03j9rdcxb9bhxk40dkmy10ikz4yzsxhy3f9k9ix3x577xbfvd9")))) + "0i0kfyg43nryyka2bjlgz4x75w965224qp36wz1hl7a2lswb6ajp")))) (build-system r-build-system) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "https://github.com/rstats-db/DBI") (synopsis "R database interface") (description @@ -1288,13 +1290,13 @@ R/DBMS implementations.") (define-public r-bh (package (name "r-bh") - (version "1.72.0-3") + (version "1.75.0-0") (source (origin (method url-fetch) (uri (cran-uri "BH" version)) (sha256 (base32 - "1ay8vb6i730lipg8b8g3893vqglhw2kqpc29lwdrxdkb66iw33l8")))) + "0nkgvl5qjs2a7jv0ncsrl4fqaw2pdaj7a1pncdv6kp874sci0k5f")))) (build-system r-build-system) (home-page "https://github.com/eddelbuettel/bh") (synopsis "R package providing subset of Boost headers") @@ -1583,13 +1585,13 @@ R packages that praise their users.") (define-public r-testthat (package (name "r-testthat") - (version "3.0.0") + (version "3.0.1") (source (origin (method url-fetch) (uri (cran-uri "testthat" version)) (sha256 (base32 - "069ixg03r1s85my9dbc9c1261i4gz8fc1mv67whi2l6kpbp4cjzh")))) + "1l1s4jgmgbsf711ma5i58ssgkz98an7hijcxvwfz314nf5fc8zr9")))) (build-system r-build-system) (propagated-inputs `(("r-brio" ,r-brio) @@ -1645,13 +1647,13 @@ defined in different packages.") (define-public r-rlang (package (name "r-rlang") - (version "0.4.9") + (version "0.4.10") (source (origin (method url-fetch) (uri (cran-uri "rlang" version)) (sha256 (base32 - "0qix6jigz3qqjx151fpv1k5hq2miqyakvm3jql2qqsyr9d1028yr")))) + "0ximv89f6zymnwms121k1jfvvflrdm3pmmf5xyvz56f1qiq04lq7")))) (build-system r-build-system) (home-page "http://rlang.tidyverse.org") (synopsis "Functions for base types, core R and Tidyverse features") @@ -1663,14 +1665,14 @@ like tidy evaluation.") (define-public r-tibble (package (name "r-tibble") - (version "3.0.4") + (version "3.0.5") (source (origin (method url-fetch) (uri (cran-uri "tibble" version)) (sha256 (base32 - "189yyl27mnswk1z51xw6gj3lyxgy6m332jq8xyvwskff57w2w692")))) + "142i34h53b8w8jkh3l8y3xsqfvvgp7ybfbv830bjky7cymxjvj8w")))) (build-system r-build-system) (propagated-inputs `(("r-cli" ,r-cli) @@ -1695,13 +1697,13 @@ and printing capabilities than traditional data frames.") (define-public r-dplyr (package (name "r-dplyr") - (version "1.0.2") + (version "1.0.3") (source (origin (method url-fetch) (uri (cran-uri "dplyr" version)) (sha256 (base32 - "0jnw18nw20gw3jvq3kvkf9mqn6b7mvgmys8g6350k5jwpygk5cbw")))) + "0hc4wnx70mrsb3s0k5ywffhnky3hznlrvvs22m6ls5crgvcak898")))) (build-system r-build-system) (propagated-inputs `(("r-ellipsis" ,r-ellipsis) @@ -1850,13 +1852,13 @@ times.") (define-public r-data-table (package (name "r-data-table") - (version "1.13.4") + (version "1.13.6") (source (origin (method url-fetch) (uri (cran-uri "data.table" version)) (sha256 (base32 - "0jrvl5b8qbzmiymhjgbj4l2nai87ijvv33aw24xvzjx0rkys9dv1")))) + "16ryrpzl86krww5nx7a97i09y5xqld4lw4d9pa1vzjl99x6ds36m")))) (build-system r-build-system) (inputs `(("zlib" ,zlib))) @@ -2125,14 +2127,14 @@ limited to R.") (define-public r-backports (package (name "r-backports") - (version "1.2.0") + (version "1.2.1") (source (origin (method url-fetch) (uri (cran-uri "backports" version)) (sha256 (base32 - "1xgp4i6yxkh2viia96hlf004hn47yrhfivwf8wv63xdldqa8yj9v")))) + "1mf2nz78l97lbxyagv55bcxrny51ds8g28h307cfa1g3ayylp0x2")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/backports") (synopsis "Reimplementations of functions introduced since R 3.0.0") @@ -2409,13 +2411,13 @@ functions make it easy to control additional request components.") (define-public r-git2r (package (name "r-git2r") - (version "0.27.1") + (version "0.28.0") (source (origin (method url-fetch) (uri (cran-uri "git2r" version)) (sha256 (base32 - "1h1vfzym6hi1fqs9p5z5v0f4xldggr425frw8k6dsidah3qhg4h9")))) + "1wjmbs9cmm16pm3g0rmqp7cxxyh95m5lgx4fx5bpgj6j466i8vff")))) (build-system r-build-system) (inputs `(("libgit2" ,libgit2) @@ -2494,13 +2496,13 @@ tools to simplify the devolpment of R packages.") (define-public r-withr (package (name "r-withr") - (version "2.3.0") + (version "2.4.0") (source (origin (method url-fetch) (uri (cran-uri "withr" version)) (sha256 (base32 - "1837vjp35npjrnis1im5xrwj1swpgnms00gkjiz7296l8yckrh1c")))) + "1y0l6zbpg0wix60r58yk452aqvx4rd0bk7zw9b90lzniwk3wvr7d")))) (build-system r-build-system) (native-inputs `(("r-knitr" ,r-knitr))) @@ -2515,18 +2517,20 @@ were originally a part of the r-devtools package.") (define-public r-hms (package (name "r-hms") - (version "0.5.3") + (version "1.0.0") (source (origin (method url-fetch) (uri (cran-uri "hms" version)) (sha256 (base32 - "1baki0qw5ijgiflvsdvqj3apg4yanf12vx14kwbqdzk5rz46fasf")))) + "0qn9lvpkqrpxck88nf0zbff43vd7d6s1ibg58qfr3w14sw1yj14p")))) (build-system r-build-system) (propagated-inputs - `(("r-rlang" ,r-rlang) + `(("r-ellipsis" ,r-ellipsis) + ("r-lifecycle" ,r-lifecycle) ("r-pkgconfig" ,r-pkgconfig) + ("r-rlang" ,r-rlang) ("r-vctrs" ,r-vctrs))) (home-page "https://github.com/rstats-db/hms") (synopsis "Pretty time of day") @@ -2630,13 +2634,13 @@ well as additional utilities such as panel and axis annotation functions.") (define-public r-rcpparmadillo (package (name "r-rcpparmadillo") - (version "0.10.1.2.0") + (version "0.10.1.2.2") (source (origin (method url-fetch) (uri (cran-uri "RcppArmadillo" version)) (sha256 (base32 - "0nzi6plhdijx3khavmywzw9wbch0hj8kygphw35wdlslm4cnqcj1")))) + "0sfhk4mh39ab1y7pmlnijg4w65yz7pfsyjlqy931zdpjzh1kfciq")))) (properties `((upstream-name . "RcppArmadillo"))) (build-system r-build-system) (propagated-inputs @@ -2676,13 +2680,13 @@ vectors.") (define-public r-catools (package (name "r-catools") - (version "1.18.0") + (version "1.18.1") (source (origin (method url-fetch) (uri (cran-uri "caTools" version)) (sha256 (base32 - "0y1kgyiy322yhb0phzwvf2zgjz9awp13lhzhk9v1ddg88656jhq3")))) + "1yf98x2gaf84y9m32xrg84g384zlfwsdw7wvywdljpgdpvzs9szz")))) (properties `((upstream-name . "caTools"))) (build-system r-build-system) (propagated-inputs @@ -2722,13 +2726,13 @@ certain criterion, e.g., it contains a certain regular file.") (define-public r-rmarkdown (package (name "r-rmarkdown") - (version "2.5") + (version "2.6") (source (origin (method url-fetch) (uri (cran-uri "rmarkdown" version)) (sha256 - (base32 "0vmd1kykd4p1nwqbvra34sld5brac0wxb1zmav4wxj05shy67bd5")))) + (base32 "1c7nrpnv2v43msv7nia90rjh6s5x9m5wlb3mpiwy04fyfb29krz6")))) (properties `((upstream-name . "rmarkdown"))) (build-system r-build-system) (propagated-inputs @@ -2837,13 +2841,13 @@ a column in data frame.") (define-public r-rsqlite (package (name "r-rsqlite") - (version "2.2.1") + (version "2.2.2") (source (origin (method url-fetch) (uri (cran-uri "RSQLite" version)) (sha256 (base32 - "0lynli9144dzb9vhxssba20v7z5h2nirawpvvy8ykv4n3ir7qlsl")))) + "0wx8awxfd4q4mb5dk261rf7zd7y2lcm121fplay0vxl697yym719")))) (properties `((upstream-name . "RSQLite"))) (build-system r-build-system) (propagated-inputs @@ -3034,14 +3038,14 @@ statements.") (define-public r-segmented (package (name "r-segmented") - (version "1.3-0") + (version "1.3-1") (source (origin (method url-fetch) (uri (cran-uri "segmented" version)) (sha256 (base32 - "1a9nnlf8j8j4ik34z19x187s8ki7pv1aayr344jrpn3h6m8fk3x5")))) + "0g8l1i31zfqamvwc5j537k3ld6dr5z81p84grdlqq41gywmyidmr")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/segmented") (synopsis "Regression models with breakpoints estimation") @@ -3194,13 +3198,13 @@ using the multicore functionality of the parallel package.") (define-public r-dt (package (name "r-dt") - (version "0.16") + (version "0.17") (source (origin (method url-fetch) (uri (cran-uri "DT" version)) (sha256 (base32 - "0in4d34nxb4pk2jygj0a21cqf0k0m4dhm4rjv68bnkp5kmmz6kbk")))) + "0mpvyfmi2viyhdqx11hznd7dl0q6kxrdmppjsmm2pk0x8a904hz3")))) (properties `((upstream-name . "DT"))) (build-system r-build-system) @@ -3273,13 +3277,13 @@ analysis of large sparse or dense matrices.") (define-public r-glmnet (package (name "r-glmnet") - (version "4.0-2") + (version "4.1") (source (origin (method url-fetch) (uri (cran-uri "glmnet" version)) (sha256 - (base32 "0qdswxvdwjcnw0by15p9yfzw8laq4f2j0ivpma6q8c5zywldpxxc")))) + (base32 "1js01qnznm20h4pslaw1ragxhrzk0w4nw7r6ryg7i27l344za2lg")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran) @@ -3779,14 +3783,14 @@ and tidyr provides no margins or aggregation.") (define-public r-hexbin (package (name "r-hexbin") - (version "1.28.1") + (version "1.28.2") (source (origin (method url-fetch) (uri (cran-uri "hexbin" version)) (sha256 (base32 - "1ry6jm3lqz3mj0s5rzbs6mpkz2hxpnvbw8c1vwc4pj7b173r5l22")))) + "0bbhs5pwxh474w62sq6gqvih7habancxng9wd4f2rgn6lv9zhhb2")))) (build-system r-build-system) (propagated-inputs `(("r-lattice" ,r-lattice))) @@ -3827,13 +3831,13 @@ features present in other programming languages.") (define-public r-plotly (package (name "r-plotly") - (version "4.9.2.1") + (version "4.9.3") (source (origin (method url-fetch) (uri (cran-uri "plotly" version)) (sha256 (base32 - "1f0x83a2s7200iqi6gpngijks06fcvcbm6701d5r5rxpb8rawppl")))) + "0801i2q7sw62x734d58h9p2fwpi1hirqj73gsg18pqkdv4b1lkfl")))) (build-system r-build-system) (propagated-inputs `(("r-base64enc" ,r-base64enc) @@ -3842,7 +3846,6 @@ features present in other programming languages.") ("r-data-table" ,r-data-table) ("r-dplyr" ,r-dplyr) ("r-ggplot2" ,r-ggplot2) - ("r-hexbin" ,r-hexbin) ("r-htmltools" ,r-htmltools) ("r-htmlwidgets" ,r-htmlwidgets) ("r-httr" ,r-httr) @@ -3856,6 +3859,7 @@ features present in other programming languages.") ("r-scales" ,r-scales) ("r-tibble" ,r-tibble) ("r-tidyr" ,r-tidyr) + ("r-vctrs" ,r-vctrs) ("r-viridislite" ,r-viridislite))) (home-page "https://plot.ly/r") (synopsis "Create interactive web graphics") @@ -4137,14 +4141,14 @@ existing packages provide.") (define-public r-sfsmisc (package (name "r-sfsmisc") - (version "1.1-7") + (version "1.1-8") (source (origin (method url-fetch) (uri (cran-uri "sfsmisc" version)) (sha256 (base32 - "12g6m8sf17q3qmm133nm4fa296w5n5d9ly3fvb2nvc0w4llkif3l")))) + "198zpkz1gvw954ym8669svrk81yb49j6fyk5i6a7dw07z3snlmdn")))) (build-system r-build-system) (home-page "https://cran.r-project.org/web/packages/sfsmisc") (synopsis "Utilities from \"Seminar fuer Statistik\" ETH Zurich") @@ -4532,14 +4536,14 @@ Farebrother's algorithm or Liu et al.'s algorithm.") (define-public r-cowplot (package (name "r-cowplot") - (version "1.1.0") + (version "1.1.1") (source (origin (method url-fetch) (uri (cran-uri "cowplot" version)) (sha256 (base32 - "04d5pg4xi9nhgcbam71b5mp3q1g804ng864v90add1kddfyl3f9h")))) + "0j7d5vhzdxn1blrsfafx5z8lhq122rp8230hp9czrpsnnhjydp67")))) (build-system r-build-system) (propagated-inputs `(("r-ggplot2" ,r-ggplot2) @@ -4789,14 +4793,14 @@ can be efficiently implemented directly in the R language.") (define-public r-robustbase (package (name "r-robustbase") - (version "0.93-6") + (version "0.93-7") (source (origin (method url-fetch) (uri (cran-uri "robustbase" version)) (sha256 (base32 - "1cr478xi4n9jwsdpbq182a7ig47rpb413q28dz6d1am08sk6657a")))) + "0mh9d114p3jdrjf8yn4dx5ff41niz5wn411y0ckjcpnazp8d44c9")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -4969,13 +4973,13 @@ groupings.") (define-public r-vgam (package (name "r-vgam") - (version "1.1-4") + (version "1.1-5") (source (origin (method url-fetch) (uri (cran-uri "VGAM" version)) (sha256 - (base32 "1iwrpyhz3khgw904zxz3pn7d61zvkd5m22gimzk57f8jjplxh1zm")))) + (base32 "1fx123h4x5awzshv0m4jqbbllrdjfpslb2i8gl9phm1y1wahn69h")))) (properties `((upstream-name . "VGAM"))) (build-system r-build-system) (native-inputs @@ -5036,14 +5040,14 @@ based on an interface to Fortran implementations by M. J. D. Powell.") (define-public r-rcppeigen (package (name "r-rcppeigen") - (version "0.3.3.7.0") + (version "0.3.3.9.1") (source (origin (method url-fetch) (uri (cran-uri "RcppEigen" version)) (sha256 (base32 - "1b78qcjim0n9klgkr82n794d6bj9r9f33g0kcsszsns2hir65sk2")))) + "0qp9gypar280lm84pc8w0fxw4jgwqygwi3qnl5sl52kpkcj8c14a")))) (properties `((upstream-name . "RcppEigen"))) (build-system r-build-system) (propagated-inputs @@ -5106,13 +5110,13 @@ using modular prediction and response module classes.") (define-public r-quantreg (package (name "r-quantreg") - (version "5.75") + (version "5.82") (source (origin (method url-fetch) (uri (cran-uri "quantreg" version)) (sha256 - (base32 "05mb1qmwah5sdgg2z7m36lqkh479phvb1cx4sjnv1ykvmi9alxv5")))) + (base32 "01wcai04asr0wcfm001whihwbbx3b3r1m65ngknj82nh6hg4xhza")))) (build-system r-build-system) (native-inputs `(("gfortran" ,gfortran))) @@ -5196,20 +5200,25 @@ C++ library for numerical linear algebra and RcppEigen glue.") (define-public r-pbkrtest (package (name "r-pbkrtest") - (version "0.4-8.6") + (version "0.5-0.1") (source (origin (method url-fetch) (uri (cran-uri "pbkrtest" version)) (sha256 (base32 - "0s5xhhrhv5i9680lw6af9lj2x4jc3fygmzzk0jjpxnb8g4b3p1jz")))) + "0sgl8r74cknmp8lnq5jvc1w181274ylgk6w4pxf4mzkfii42argm")))) (build-system r-build-system) (propagated-inputs - `(("r-lme4" ,r-lme4) + `(("r-broom" ,r-broom) + ("r-dplyr" ,r-dplyr) + ("r-lme4" ,r-lme4) ("r-magrittr" ,r-magrittr) ("r-mass" ,r-mass) - ("r-matrix" ,r-matrix))) + ("r-matrix" ,r-matrix) + ("r-numderiv" ,r-numderiv))) + (native-inputs + `(("r-knitr" ,r-knitr))) (home-page "http://people.math.aau.dk/~sorenh/software/pbkrtest/") (synopsis "Methods for linear mixed model comparison") (description @@ -5526,14 +5535,14 @@ easy and fun.") (define-public r-fdrtool (package (name "r-fdrtool") - (version "1.2.15") + (version "1.2.16") (source (origin (method url-fetch) (uri (cran-uri "fdrtool" version)) (sha256 (base32 - "1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5")))) + "1aap4k1l3a9m43374xq688mqnzkgqx8l021li262r3h1xr4adpp7")))) (build-system r-build-system) (home-page "http://strimmerlab.org/software/fdrtool/") (synopsis "Estimation of false discovery rates and higher criticism") diff --git a/gnu/packages/syndication.scm b/gnu/packages/syndication.scm index efe231c92f..54fa221fa6 100644 --- a/gnu/packages/syndication.scm +++ b/gnu/packages/syndication.scm @@ -56,7 +56,7 @@ (define-public newsboat (package (name "newsboat") - (version "2.22") + (version "2.22.1") (source (origin (method url-fetch) @@ -64,7 +64,7 @@ "/newsboat-" version ".tar.xz")) (sha256 (base32 - "146p3j46hna1m8zlacb9q1ljnldwv6xrjbaplm94f2x0v4azi1jj")))) + "1476fmfw2hkrjwyr3f7k9316lzwnn2b1dbc51rybcxipqlfg8849")))) (build-system cargo-build-system) (native-inputs `(("gettext" ,gettext-minimal) @@ -191,6 +191,7 @@ file system, and many more features.") (uri (git-reference (url "https://github.com/lwindolf/liferea/") (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 "1g9463bvswsm899j6dfhslcg6np70m5wq143mjicr24zy8d17bm7")))) (build-system glib-or-gtk-build-system) diff --git a/gnu/packages/terminals.scm b/gnu/packages/terminals.scm index 74e1937bbc..e6a7d6b16d 100644 --- a/gnu/packages/terminals.scm +++ b/gnu/packages/terminals.scm @@ -21,7 +21,7 @@ ;;; Copyright © 2020 Valentin Ignatev <valentignatev@gmail.com> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Marius Bakke <marius@gnu.org> -;;; Copyright © 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> +;;; Copyright © 2020, 2021 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2020 Leo Famulari <leo@famulari.name> ;;; ;;; This file is part of GNU Guix. @@ -1242,7 +1242,7 @@ made by suckless.") ("rust-unicode-width" ,rust-unicode-width-0.1) ("rust-parking-lot" ,rust-parking-lot-0.9) ("rust-urlocator" ,rust-urlocator-0.1) - ("rust-xdg" ,rust-xdg-2.2) + ("rust-xdg" ,rust-xdg-2) ("rust-image" ,rust-image-0.22) ("rust-dirs" ,rust-dirs-2.0) ("rust-x11-dl" ,rust-x11-dl-2) diff --git a/gnu/packages/tex.scm b/gnu/packages/tex.scm index 3c5f08196e..bdf881f643 100644 --- a/gnu/packages/tex.scm +++ b/gnu/packages/tex.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2018, 2020 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Paul Garlick <pgarlick@tourbillion-technology.com> +;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -824,6 +825,33 @@ originals.") (define-public texlive-fonts-cm-super (deprecated-package "texlive-fonts-cm-super" texlive-cm-super)) +(define-public texlive-courier + (package + (inherit (simple-texlive-package + "texlive-courier" + (list "/dvips/courier/" + "/fonts/afm/adobe/courier/" + "/fonts/afm/urw/courier/" + "/fonts/map/dvips/courier/" + "/fonts/tfm/adobe/courier/" + "/fonts/tfm/urw35vf/courier/" + "/fonts/type1/adobe/courier/" + "/fonts/type1/urw/courier/" + "/fonts/vf/adobe/courier/" + "/fonts/vf/urw35vf/courier/" + "/tex/latex/courier/" + "/tex4ht/ht-fonts/alias/adobe/courier/" + "/tex4ht/ht-fonts/unicode/adobe/courier/") + (base32 + "1hfgisdi7mjf5156ax6d6zsbiq42zkmp1x5lg17rgzf61k6d6z1y") + #:trivial? #t)) + (home-page "https://ctan.org/pkg/urw-base35") + (synopsis "URW Base 35 font pack for LaTeX") + (description "This package provides a drop-in replacements for the Courier +font from Adobe's basic set.") + ;; No license version specified. + (license license:gpl3+))) + (define-public texlive-lm (package (inherit (simple-texlive-package @@ -1291,6 +1319,32 @@ described in the TeXbook, together with various supporting files (some also discussed in the book).") (license license:knuth))) +(define-public texlive-helvetic + (package + (inherit (simple-texlive-package + "texlive-helvetic" + (list "/dvips/helvetic/" + "/fonts/afm/adobe/helvetic/" + "/fonts/afm/urw/helvetic/" + "/fonts/map/dvips/helvetic/" + "/fonts/tfm/adobe/helvetic/" + "/fonts/tfm/monotype/helvetic/" + "/fonts/tfm/urw35vf/helvetic/" + "/fonts/type1/urw/helvetic/" + "/fonts/vf/adobe/helvetic/" + "/fonts/vf/monotype/helvetic/" + "/fonts/vf/urw35vf/helvetic/" + "/tex/latex/helvetic/") + (base32 + "0c3f1ly7y6404z0akbfbbfql13sz717v0n0g69qjpr69hi4n0nsl") + #:trivial? #t)) + (home-page "https://ctan.org/pkg/urw-base35") + (synopsis "URW Base 35 font pack for LaTeX") + (description "This package provides a drop-in replacements for the Helvetica +font from Adobe's basic set.") + ;; No license version specified. + (license license:gpl3+))) + (define-public texlive-hyphen-afrikaans (package (inherit (texlive-hyphen-package @@ -3535,6 +3589,29 @@ distribution.") (description "This is a very limited subset of the TeX Live distribution. It includes little more than the required set of LaTeX packages."))) +(define-public texlive-tipa + (package + (inherit (simple-texlive-package + "texlive-tipa" + (list "/tex4ht/ht-fonts/alias/tipa/" + "/doc/fonts/tipa/" + "/fonts/map/dvips/tipa/" + "/fonts/source/public/tipa/" + "/fonts/tfm/public/tipa/" + "/fonts/type1/public/tipa/" + "/tex/latex/tipa/") + (base32 + "1h53dscv8z6fsa0ax5dys3x11b2f1g60l22hpdf7c88cvdhcs8sn") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/tipa") + (synopsis "Fonts and macros for IPA phonetics characters") + (description "These fonts are considered the \"ultimate answer\" to IPA +typesetting. The encoding of these 8-bit fonts has been registered as LaTeX +standard encoding T3, and the set of addendum symbols as encoding +TS3. \"Times-like\" Adobe Type 1 versions are provided for both the T3 and the +TS3 fonts.") + (license license:lppl))) + (define-public texlive-latex-amsrefs (package (name "texlive-latex-amsrefs") @@ -5353,6 +5430,56 @@ alternative version of the Kurier fonts. The difference lies in the absence of ink traps which typify the Kurier font.") (license license:gfl1.0))) +(define-public texlive-jknappen + (package + (inherit (simple-texlive-package + "texlive-jknappen" + (list "/fonts/source/jknappen/" + "/fonts/tfm/jknappen/" + "/fonts/source/jknappen/" + "/fonts/tfm/jknappen/" + "/tex4ht/ht-fonts/alias/jknappen/" + "/tex4ht/ht-fonts/unicode/jknappen/") + (base32 + "1v5wk5il41bddzr81h5636h3cjz0w1qann5g9garsb7qfch9fhws") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/jknappen") + (synopsis "Miscellaneous packages by Jörg Knappen") + (description + "This package contains a collection of macros by Jörg Knappen: +@table @code +@item greekctr +New counterstyles @code{\\greek} and @code{\\Greek}. +@item holtpolt +Non-commutative fractions +@item latin1jk +@itemx latin2jk +@itemx latin3jk +Inputenc definition files that allow verbatim input in the respective ISO +Latin codes. +@item mathbol +Blackboard bold fonts for use in maths. +@item mathrsfs +Mathematical script letters, as traditionally used in physics for Lagrangian, +Hamiltonian, path integral measures, etc. +@item parboxx +New alignment options for parboxen at top and bottom of the box. +@item sans +Interchanges the roles of sans serif and roman fonts throughout the document. +@item semtrans +Support for special latin letters and diacritics used in transliteration of +semitic languages +@item smartmn +Intelligent hyphen/minus, which guesses whether to render as hyphen or minus. +@item sgmlcmpt +Commands replacing the characters <, >, and &. +@item tccompat +A compatibility package for users of the older versions of the textcomp package. +@item young +Simple Young tableaux. +@end table") + (license license:gpl2))) ;per the 00readme_txt file. + (define-public texlive-libertine (package (inherit (simple-texlive-package @@ -5504,6 +5631,32 @@ CM-Super family of fonts. The package also offers its own LaTeX support for OT2 encoded fonts, CM bright shaped fonts and Concrete shaped fonts.") (license license:lppl))) +(define-public texlive-marvosym + (package + (inherit (simple-texlive-package + "texlive-marvosym" + (list "/doc/fonts/marvosym/" + "/fonts/afm/public/marvosym/" + "/fonts/map/dvips/marvosym/" + "/fonts/tfm/public/marvosym/" + "/fonts/truetype/public/marvosym/" + "/fonts/type1/public/marvosym/" + "/tex/latex/marvosym/") + (base32 + "0m3bbg06cia8ni86fjhvb7x4a5qcxgnpqcvicfms91w2px9ysc46") + #:trivial? #t)) + (home-page "https://martinvogel.de/blog/index.php?\ +/archives/131-Marvosym.ttf.html") + (synopsis "Martin Vogel's Symbols (marvosym) font") + (description "The Martin Vogel’s Symbols fonts (marvosym) contains the +Euro currency symbol as defined by the European commission, along with symbols +for structural engineering, symbols for steel cross-sections, astronomy +signs (sun, moon, planets), the 12 signs of the zodiac, scissor symbols, CE +sign and others. This package contains both the original TrueType font and +the derived Type 1 font, together with support files for TeX (LaTeX).") + (license (list license:lppl ;for TeX support files + license:silofl1.1)))) ;for fonts + (define-public texlive-metapost (package (name "texlive-metapost") @@ -5592,6 +5745,24 @@ Association for Computing Machinery (ACM).") get a narrower “natural” width.") (license license:lppl))) +(define-public texlive-wasy + (package + (inherit (simple-texlive-package + "texlive-wasy" + (list "/fonts/source/public/wasy/" + "/fonts/tfm/public/wasy/" + "/tex/plain/wasy/" + "/doc/fonts/wasy/") + (base32 + "10dxbqgv42niybj65hj6y47x8lsl83m48rgw2v2s50k05wbghwbm") + #:trivial? #t)) + (home-page "https://www.ctan.org/pkg/wasy") + (synopsis "Waldi symbol fonts") + (description "This package provides the @code{wasy} (Waldi symbol) fonts, +in the Metafont and Adobe Type 1 formats. Support under LaTeX is provided by +the @code{wasysym} package.") + (license license:public-domain))) + (define-public texlive-latex-wasysym (package (name "texlive-latex-wasysym") @@ -5606,12 +5777,12 @@ get a narrower “natural” width.") (build-system texlive-build-system) (arguments '(#:tex-directory "latex/wasysym")) (home-page "https://www.ctan.org/pkg/wasysym") - (synopsis "LaTeX support file to use the WASY2 fonts") + (synopsis "LaTeX support file to use the @code{wasy} fonts") (description - "The wasy2WASY2 (Waldi Symbol) font by Roland Waldi provides many glyphs -like male and female symbols and astronomical symbols, as well as the complete -lasy font set and other odds and ends. The wasysym package implements an easy -to use interface for these symbols.") + "The @code{wasy} (Waldi Symbol) font by Roland Waldi provides many glyphs like +male and female symbols and astronomical symbols, as well as the complete +@code{lasy} font set and other odds and ends. The @code{wasysym} package +implements an easy to use interface for these symbols.") (license license:lppl))) (define-public texlive-latex-wrapfig diff --git a/gnu/packages/text-editors.scm b/gnu/packages/text-editors.scm index 81915ca52b..052dfa1236 100644 --- a/gnu/packages/text-editors.scm +++ b/gnu/packages/text-editors.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2017 Feng Shu <tumashu@163.com> ;;; Copyright © 2017 Nikita <nikita@n0.is> ;;; Copyright © 2014 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.org> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2019 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2019, 2020 Nicolas Goaziou <mail@nicolasgoaziou.fr> @@ -230,7 +230,7 @@ bindings and many of the powerful features of GNU Emacs.") (define-public jucipp (package (name "jucipp") - (version "1.6.1") + (version "1.6.2") (home-page "https://gitlab.com/cppit/jucipp") (source (origin (method git-fetch) @@ -242,7 +242,7 @@ bindings and many of the powerful features of GNU Emacs.") (recursive? #t))) (file-name (git-file-name name version)) (sha256 - (base32 "0lb477acqrm3fy3j6i7j9l68j48cnkrzi80588npwwjssqicy4g6")))) + (base32 "10idv2kyw2dg45wfcnh7nybs8qys7kfvif90sjrff3541k97pm5y")))) (build-system cmake-build-system) (arguments `(#:configure-flags '("-DBUILD_TESTING=ON" diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index 5eaaf2681e..f53ca9b11b 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -6,12 +6,12 @@ ;;; Copyright © 2015, 2016 Mathieu Lirzin <mthl@gnu.org> ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2014, 2016, 2019 Eric Bavier <bavier@member.fsf.org> -;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2015, 2016, 2017, 2018, 2019, 2020, 2021 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2015, 2018, 2020 Kyle Meyer <kyle@kyleam.com> ;;; Copyright © 2015, 2017, 2018, 2020 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name> ;;; Copyright © 2016, 2017, 2018 Nikita <nikita@n0.is> -;;; Copyright © 2017, 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com> ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2017, 2020 EuAndreh <eu@euandre.org> @@ -1683,14 +1683,14 @@ history. It implements the changeset evolution concept for Mercurial.") (define-public neon (package (name "neon") - (version "0.30.2") + (version "0.31.2") (source (origin (method url-fetch) - (uri (string-append "http://www.webdav.org/neon/neon-" + (uri (string-append "https://notroj.github.io/neon/neon-" version ".tar.gz")) (sha256 (base32 - "1jpvczcx658vimqm7c8my2q41fnmjaf1j03g7bsli6rjxk6xh2yv")))) + "0y46dbhiblcvg8k41bdydr3fivghwk73z040ki5825d24ynf67ng")))) (build-system gnu-build-system) (native-inputs `(("perl" ,perl) @@ -1704,11 +1704,12 @@ history. It implements the changeset evolution concept for Mercurial.") ;; https://sourceware.org/bugzilla/show_bug.cgi?id=16475 #:tests? #f #:configure-flags '("--enable-shared" + "--disable-static" ;; requires libgnutils-config, deprecated ;; in gnutls 2.8. ; "--with-ssl=gnutls"))) "--with-ssl=openssl"))) - (home-page "http://www.webdav.org/neon/") + (home-page "https://notroj.github.io/neon/") (synopsis "HTTP and WebDAV client library") (description "Neon is an HTTP and WebDAV client library, with a C interface and the @@ -1937,7 +1938,7 @@ standards-compliant ChangeLog entries based on the changes that it detects.") (define-public diffstat (package (name "diffstat") - (version "1.63") + (version "1.64") (source (origin (method url-fetch) (uri @@ -1948,7 +1949,7 @@ standards-compliant ChangeLog entries based on the changes that it detects.") "diffstat-" version ".tgz"))) (sha256 (base32 - "0vyw200s5dv1257pmrh6c6fdkmw3slyz5szpqfx916xr04sdbpby")))) + "1z7pwcv48fjnhxrjcsjdy83x8b9ckl582mbbds90a79fkn6y7bmq")))) (build-system gnu-build-system) (home-page "https://invisible-island.net/diffstat/") (synopsis "Make histograms from the output of @command{diff}") diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 824ea62273..cebb70d28e 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -41,7 +41,7 @@ ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Guillaume Le Vaillant <glv@posteo.net> ;;; Copyright © 2020 Alex McGrath <amk@amk.ie> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Vinicius Monego <monego@posteo.net> ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Alexandru-Sergiu Marton <brown121407@posteo.ro> @@ -885,14 +885,14 @@ H.264 (MPEG-4 AVC) video streams.") (define-public mkvtoolnix (package (name "mkvtoolnix") - (version "51.0.0") + (version "52.0.0") (source (origin (method url-fetch) (uri (string-append "https://mkvtoolnix.download/sources/" "mkvtoolnix-" version ".tar.xz")) (sha256 - (base32 "0w2crz6wnfw18m9m4zrij1yplcq5drzhz8n58w9kp51wl48a0yn1")) + (base32 "15y7ahlifsclnkl70wn5w34dil8nwcwcjnw3k2ydqc6dz4vb0j5s")) (modules '((guix build utils))) (snippet '(begin ;; Delete bundled libraries. @@ -914,6 +914,7 @@ H.264 (MPEG-4 AVC) video streams.") ("file" ,file) ("flac" ,flac) ("fmt" ,fmt) + ("libdvdread" ,libdvdread) ("libmatroska" ,libmatroska) ("libogg" ,libogg) ("libvorbis" ,libvorbis) @@ -1765,7 +1766,7 @@ videoformats depend on the configuration flags of ffmpeg.") (define-public vlc (package (name "vlc") - (version "3.0.11.1") + (version "3.0.12") (source (origin (method url-fetch) (uri (string-append @@ -1775,7 +1776,7 @@ videoformats depend on the configuration flags of ffmpeg.") (patches (search-patches "vlc-qt-5.15.patch")) (sha256 (base32 - "1f46h0hv7fk35zg4iczlp7ib7h2jmh8m4r5klw3g2558ib9134qq")))) + "0ygqihw2c5vvzv8950dlf7rdwz1cpz1668jgyja604ljibrmix7g")))) (build-system gnu-build-system) (native-inputs `(("flex" ,flex) @@ -2193,14 +2194,14 @@ To load this plugin, specify the following option when starting mpv: (define-public youtube-dl (package (name "youtube-dl") - (version "2021.01.08") + (version "2021.01.16") (source (origin (method url-fetch) (uri (string-append "https://youtube-dl.org/downloads/latest/" "youtube-dl-" version ".tar.gz")) (sha256 (base32 - "1k870v9xc7g16nvixa272sdjnmc7pl49ymmnn6rdz0mcj2548h3k")) + "1q8pvw5j45k8nvr3d9rvnhi6xaj1mdqlkrg7q7qq6zciq5r54fhi")) (snippet '(begin ;; Delete the pre-generated files, except for the man page @@ -3074,7 +3075,7 @@ be used for realtime video capture via Linux-specific APIs.") (define-public obs (package (name "obs") - (version "26.1.1") + (version "26.1.2") (source (origin (method git-fetch) (uri (git-reference @@ -3083,7 +3084,7 @@ be used for realtime video capture via Linux-specific APIs.") (file-name (git-file-name name version)) (sha256 (base32 - "18b40ayww5isjqnjz63l05fi5xwzrcc64jvwxwq8nqsydn0b14ng")))) + "1k1asqiqw757v59ayx0w029ril947hs0lcp8n91knzjl891fr4nc")))) (build-system cmake-build-system) (arguments `(#:configure-flags @@ -4156,7 +4157,7 @@ It counts more than 100 plugins.") (define-public motion (package (name "motion") - (version "4.2.2") + (version "4.3.2") (home-page "https://motion-project.github.io/") (source (origin (method git-fetch) @@ -4165,7 +4166,7 @@ It counts more than 100 plugins.") (commit (string-append "release-" version)))) (sha256 (base32 - "05c1gx75xy2hw49x6vkydvwxbr80kipsc3nr906k3hq8735svx6f")) + "09xs815jsivcilpmnrx2jkcxirj4lg5kp99fkr0p2sdxw03myi95")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (native-inputs @@ -4182,7 +4183,7 @@ It counts more than 100 plugins.") '(#:phases (modify-phases %standard-phases (replace 'bootstrap (lambda _ - (patch-shebang "version.sh") + (patch-shebang "scripts/version.sh") (invoke "autoreconf" "-vfi")))) #:configure-flags '("--sysconfdir=/etc") #:make-flags (list (string-append "sysconfdir=" diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm index 10eae8ea7d..2262aa6197 100644 --- a/gnu/packages/virtualization.scm +++ b/gnu/packages/virtualization.scm @@ -137,13 +137,28 @@ (method url-fetch) (uri (string-append "https://download.qemu.org/qemu-" version ".tar.xz")) - (sha256 - (base32 - "1rd41wwlvp0vpialjp2czs6i3lsc338xc72l3zkbb7ixjfslw5y9")) - (patches (search-patches "qemu-build-info-manual.patch")))) - (outputs '("out" "doc")) ;4.7 MiB of HTML docs - (build-system gnu-build-system) - (arguments + (sha256 + (base32 + "1rd41wwlvp0vpialjp2czs6i3lsc338xc72l3zkbb7ixjfslw5y9")) + (patches (search-patches "qemu-build-info-manual.patch")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Fix a bug in the do_ioctl_ifconf() function of qemu to + ;; make ioctl(…, SIOCGIFCONF, …) work for emulated 64 bit + ;; architectures. The size of struct ifreq is handled + ;; incorrectly. + ;; https://lists.nongnu.org/archive/html/qemu-devel/2021-01/msg01545.html + (substitute* '("linux-user/syscall.c") + (("^([[:blank:]]*)const argtype ifreq_arg_type.*$" line indent) + (string-append line indent + "const argtype ifreq_max_type[] = { MK_STRUCT(STRUCT_ifmap_ifreq) };\n")) + (("^([[:blank:]]*)target_ifreq_size[[:blank:]]=.*$" _ indent) + (string-append indent "target_ifreq_size = thunk_type_size(ifreq_max_type, 0);"))) + #t)))) + (outputs '("out" "doc")) ;4.7 MiB of HTML docs + (build-system gnu-build-system) + (arguments `(;; FIXME: Disable tests on i686 to work around ;; <https://bugs.gnu.org/40527>. #:tests? ,(or (%current-target-system) @@ -952,7 +967,7 @@ all common programming languages. Vala bindings are also provided.") (define-public lxc (package (name "lxc") - (version "4.0.5") + (version "4.0.6") (source (origin (method url-fetch) (uri (string-append @@ -960,7 +975,7 @@ all common programming languages. Vala bindings are also provided.") version ".tar.gz")) (sha256 (base32 - "1976l9308rx1ria1gazasypk5rmmf5jiqdh54dfrws5bslbdcb5g")))) + "0qz4l7mlhq7hx53q606qgvkyzyr01glsw290v8ppzvxn1fydlrci")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -1604,7 +1619,7 @@ Open Container Initiative (OCI) image layout and its tagged images.") (define-public skopeo (package (name "skopeo") - (version "1.2.0") + (version "1.2.1") (source (origin (method git-fetch) (uri (git-reference @@ -1613,7 +1628,7 @@ Open Container Initiative (OCI) image layout and its tagged images.") (file-name (git-file-name name version)) (sha256 (base32 - "1v7k3ki10i6082r7zswblyirx6zck674y6bw3plssw4p1l2611rd")))) + "1y9pmijazbgxzriymrm7zrifmkd1x1wad9b3zjcj7zwr6c999dhg")))) (build-system go-build-system) (native-inputs `(("pkg-config" ,pkg-config) diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 632a925c64..a42913250c 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -45,7 +45,7 @@ ;;; Copyright © 2018, 2019, 2020 Björn Höfling <bjoern.hoefling@bjoernhoefling.de> ;;; Copyright © 2020, 2021 Paul Garlick <pgarlick@tourbillion-technology.com> ;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> -;;; Copyright © 2020 Ryan Prior <rprior@protonmail.com> +;;; Copyright © 2020, 2021 Ryan Prior <rprior@protonmail.com> ;;; Copyright © 2020 Alexandru-Sergiu Marton <brown121407@posteo.ro> ;;; ;;; This file is part of GNU Guix. @@ -1478,7 +1478,7 @@ used to validate and fix HTML data.") (define-public esbuild (package (name "esbuild") - (version "0.8.29") + (version "0.8.32") (source (origin (method git-fetch) @@ -1487,7 +1487,7 @@ used to validate and fix HTML data.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "142gc21aaqmx0d01vmqsg7zi85pjgi3higr4ba0m52qf3mvxd6as")) + (base32 "17aa269dq0gsm4nlhh1q2mj6k8mw6v8ig3nygwk3s07l2xl5gqvn")) (modules '((guix build utils))) (snippet '(begin @@ -3995,7 +3995,7 @@ is limited to http and https.") (define-public perl-net-http (package (name "perl-net-http") - (version "6.19") + (version "6.20") (source (origin (method url-fetch) (uri (string-append @@ -4003,7 +4003,7 @@ is limited to http and https.") "Net-HTTP-" version ".tar.gz")) (sha256 (base32 - "1i1gbcwdzx74whn5vn6xbr2cp7frldfz2rfrcjp2qljr770nxdsj")))) + "07lzfycza7qqxli18xgsnqwiwxapl0b64z33wfw62aai4hm7nllj")))) (build-system perl-build-system) (propagated-inputs `(("perl-io-socket-ssl" ,perl-io-socket-ssl) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index e1359c8539..084822f2c7 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -15,7 +15,7 @@ ;;; Copyright © 2017 Mekeor Melire <mekeor.melire@gmail.com> ;;; Copyright © 2017, 2019, 2020 Marius Bakke <marius@gnu.org> ;;; Copyright © 2017, 2020 Oleg Pykhalov <go.wigust@gmail.com> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Pierre-Antoine Rouby <contact@parouby.fr> ;;; Copyright © 2018, 2019 Meiyo Peng <meiyo@riseup.net> ;;; Copyright © 2019 Rutger Helling <rhelling@mykolab.com> @@ -1301,14 +1301,14 @@ its size (define-public polybar (package (name "polybar") - (version "3.5.3") + (version "3.5.4") (source (origin (method url-fetch) (uri (string-append "https://github.com/polybar/polybar/releases/" "download/" version "/polybar-" version ".tar.gz")) (sha256 - (base32 "1016g4b981c4hl2pr0m09b4wy0ln1zf3mfp09wrxs73zgfdbngyj")))) + (base32 "0awwjp3l0y9yhmrl914710ipawp2xr43jxrvmnanahlznblg8fhk")))) (build-system cmake-build-system) (arguments ;; Test is disabled because it requires downloading googletest from the diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index 1c91068b25..79ba61b344 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -2265,7 +2265,7 @@ Xwrits hides itself until you should take another break.") (define-public xsettingsd (package (name "xsettingsd") - (version "1.0.0") + (version "1.0.2") (source (origin (method git-fetch) @@ -2274,8 +2274,7 @@ Xwrits hides itself until you should take another break.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 - "05m4jlw0mgwp24cvyklncpziq1prr2lg0cq9c055sh4n9d93d07v")))) + (base32 "14gnkz18dipsa2v24f4nm9syxaa7g21iqjm7y65jn849ka2jr1h8")))) (build-system scons-build-system) (inputs `(("libx11" ,libx11))) diff --git a/gnu/packages/xfce.scm b/gnu/packages/xfce.scm index 2192f61dc7..c8dd66b2e0 100644 --- a/gnu/packages/xfce.scm +++ b/gnu/packages/xfce.scm @@ -7,13 +7,13 @@ ;;; Copyright © 2017, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Petter <petter@mykolab.ch> ;;; Copyright © 2017 Nikita <nikita@n0.is> -;;; Copyright © 2018, 2019, 2020 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018–2021 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019 Pkill -9 <pkill9@runbox.com> ;;; Copyright © 2019 L p R n d n <guix@lprndn.info> ;;; Copyright © 2019 Ingo Ruhnke <grumbel@gmail.com> ;;; Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> ;;; Copyright © 2020 Jonathan Brielmaier <jonathan.brielmaier@web.de> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; ;;; This file is part of GNU Guix. ;;; @@ -54,6 +54,7 @@ #:use-module (gnu packages pkg-config) #:use-module (gnu packages polkit) #:use-module (gnu packages popt) + #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) #:use-module (gnu packages pulseaudio) #:use-module (gnu packages search) @@ -100,7 +101,7 @@ (define-public libxfce4util (package (name "libxfce4util") - (version "4.14.0") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -108,7 +109,7 @@ "/" name "-" version ".tar.bz2")) (sha256 (base32 - "093338faqqsrlc8dkmzr7qv411ysxczg1wlg7s3gvhrfk6vpkb9j")))) + "10svnpc8ggasym1pfgh24bfr0ndqs6lc7v1wmpsizj0zbms8snb0")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -126,7 +127,7 @@ Xfce Desktop Environment.") (define-public xfconf (package (name "xfconf") - (version "4.14.4") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -134,12 +135,17 @@ Xfce Desktop Environment.") "xfconf-" version ".tar.bz2")) (sha256 (base32 - "0wszp93z64112jq5wm4133s64in2ndvnzbgsbn8dh7p5xhp64dyc")))) + "09al5bkq89b8pb3xyxnw0cnz6crxj8678ymwq2k9nzf60y812ak5")))) (build-system gnu-build-system) (arguments '(#:phases ;; Run check after install phase to test dbus activation. (modify-phases %standard-phases + ;; tests-end seems to hang forever + (add-before 'configure 'patchout-tests-end + (lambda _ + (substitute* "tests/Makefile.in" + (("tests-end") "")))) (add-after 'install 'custom-check (lambda _ (setenv "HOME" (getenv "TMPDIR")) ; xfconfd requires a writable HOME @@ -147,8 +153,15 @@ Xfce Desktop Environment.") (setenv "XDG_DATA_DIRS" ; for finding org.xfce.Xfconf.service (string-append %output "/share")) ;; For the missing '/etc/machine-id'. - (setenv "DBUS_FATAL_WARNINGS" "0"); + (setenv "DBUS_FATAL_WARNINGS" "0") (invoke "dbus-launch" "make" "check"))) + (add-after 'custom-check 'install-shell-completions + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (etc (string-append out "/etc"))) + (with-directory-excursion "completions" + (install-file "xfconf-query" + (string-append etc "/bash_completion.d")))))) (delete 'check)))) (native-inputs `(("pkg-config" ,pkg-config) @@ -172,7 +185,7 @@ storage system.") (define-public libxfce4ui (package (name "libxfce4ui") - (version "4.14.1") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -180,7 +193,7 @@ storage system.") name "-" version ".tar.bz2")) (sha256 (base32 - "1npjhznmnckhnylsv3l7p1zvhckhmp9d7vifs8w12kdfmrg0fjf4")))) + "1anfj3n28abv9kbcpybs7q3k5g3c3d0r4xf4hyfqms2b9zlwj1lb")))) (build-system gnu-build-system) (arguments `(#:configure-flags @@ -191,14 +204,11 @@ storage system.") ("gobject-introspection" ,gobject-introspection))) (propagated-inputs `(("gtk+-3" ,gtk+) ; required by libxfce4ui-2.pc - ;; libxfce4kbd-private-2.pc refers to all these. + ;; libxfce4kbd-private-3.pc refers to all these. ("libxfce4util" ,libxfce4util) ("xfconf" ,xfconf))) (inputs `(("libsm" ,libsm) ("libice" ,libice) - ;; FIXME: required by libxfce4ui-1.pc, so should be propagated, - ;; but will lead to a conflict with gtk+. - ("gtk+-2" ,gtk+-2) ("startup-notification" ,startup-notification))) (home-page "https://www.xfce.org/") (synopsis "Widgets library for Xfce") @@ -268,7 +278,7 @@ it to your needs by using several command line options.") (define-public elementary-xfce-icon-theme (package (name "elementary-xfce-icon-theme") - (version "0.15.1") + (version "0.15.2") (source (origin (method git-fetch) (uri @@ -278,7 +288,7 @@ it to your needs by using several command line options.") (file-name (git-file-name name version)) (sha256 (base32 - "1rl15kh9c7qxw4pvwmw44fb4v3vwh6zin4wpx55bnvm5j76y6p3f")))) + "1g6vndqvp11c2kl5vkpzb1wxvr2pfb3hvqxjjdgx6qzq9x8zmiqk")))) (build-system gnu-build-system) (arguments '(#:tests? #f ; no check target @@ -303,7 +313,7 @@ upstream occasionally.") (define-public exo (package (name "exo") - (version "0.12.11") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -311,21 +321,8 @@ upstream occasionally.") "exo-" version ".tar.bz2")) (sha256 (base32 - "1dp5s64g6572h9zvx9js7qc72s728qsd9y7hl7hg6rwaq0cjb2gc")))) + "1k5sfm9cmg8k5zzzv0wb2cciqwwklnpfzcpak7wa32lsxl7b0x8r")))) (build-system gnu-build-system) - (arguments - `(#:phases - (modify-phases %standard-phases - ;; exo won't find URI::Escape otherwise - (add-after 'install 'wrap-exo-compose-mail - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (perl5lib (getenv "PERL5LIB"))) - (wrap-program (string-append out "/lib/xfce4/exo/exo-compose-mail") - `("PERL5LIB" ":" prefix - (,(string-append perl5lib ":" out - "/lib/perl5/site_perl"))))) - #t))))) (native-inputs `(("pkg-config" ,pkg-config) ("intltool" ,intltool))) @@ -334,10 +331,7 @@ upstream occasionally.") `(("gtk+-3" ,gtk+) ("libxfce4util" ,libxfce4util))) (inputs - `(;; FIXME Referred to in exo-1.pc but conflict with gtk+-3. - ("gtk+-2" ,gtk+-2) - ("libxfce4ui" ,libxfce4ui) - ("perl-uri" ,perl-uri))) + `(("libxfce4ui" ,libxfce4ui))) (home-page "https://www.xfce.org/") (synopsis "Extension library for Xfce") (description @@ -350,7 +344,7 @@ development.") (define-public garcon (package (name "garcon") - (version "0.7.0") + (version "4.16.1") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -358,14 +352,13 @@ development.") "garcon-" version ".tar.bz2")) (sha256 (base32 - "08r4dfvdvl178cjajm7ww16lwb7jsfqh3yz614mn84c0a0dvdhw2")))) + "07fjsgdjqxbcm84ga3cl495782k381k6mwksyrks3zf1l8klk4c4")))) (build-system gnu-build-system) (native-inputs - `(("pkg-config" ,pkg-config) + `(("glib:bin" ,glib "bin") + ("gobject-introspection" ,gobject-introspection) ("intltool" ,intltool) - ("glib:bin" ,glib "bin"))) - (inputs - `(("gtk+-2" ,gtk+-2))) ; required by garcon-gtk2-1.pc + ("pkg-config" ,pkg-config))) (propagated-inputs `(("gtk+-3" ,gtk+) ; required by garcon-gtk3-1.pc ("libxfce4ui" ,libxfce4ui))) ; required by garcon-gtk3-1.pc @@ -381,7 +374,7 @@ merging features essential for loading menus modified with menu editors.") (define-public tumbler (package (name "tumbler") - (version "0.2.9") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -389,7 +382,7 @@ merging features essential for loading menus modified with menu editors.") "tumbler-" version ".tar.bz2")) (sha256 (base32 - "1dh7h0jcbf8brvv9vwq4amnk6zgldl2ipdq3clzsx9p50dpr0235")))) + "0rmga1l7da0pjrs6jlyq1nfn513r543v7cchshrif1341knpy2wv")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -420,7 +413,7 @@ management D-Bus specification.") (define-public xfce4-panel (package (name "xfce4-panel") - (version "4.14.0") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -428,7 +421,7 @@ management D-Bus specification.") name "-" version ".tar.bz2")) (sha256 (base32 - "1x3flv86jh9vqah7mr5mmfx2991mc6icsqjygsc3j88lgsyz7y6m")) + "0gf57hgx6v44bc2hj570inkafbi291scc6wbhmr6sc3xngp9m5sy")) (patches (search-patches "xfce4-panel-plugins.patch")))) (build-system gnu-build-system) (arguments @@ -577,7 +570,7 @@ keys for controlling the audio volume.") (define-public xfce4-whiskermenu-plugin (package (name "xfce4-whiskermenu-plugin") - (version "2.5.1") + (version "2.5.2") (source (origin (method url-fetch) @@ -585,7 +578,7 @@ keys for controlling the audio volume.") "xfce4-whiskermenu-plugin/" (version-major+minor version) "/" "xfce4-whiskermenu-plugin-" version ".tar.bz2")) (sha256 - (base32 "09b9i68pf5ghq6dj55s4h3fj07jd5zpn1fghjwnnwxmakj54y1xj")))) + (base32 "05f53ycbszvw23g76pbdszfnqfk4f8w4imwfgljj140wzl50gxx6")))) (build-system cmake-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -659,15 +652,16 @@ per window.") (define-public xfce4-appfinder (package (name "xfce4-appfinder") - (version "4.14.0") + (version "4.16.1") (source (origin (method url-fetch) - (uri (string-append "http://archive.xfce.org/xfce/" + (uri (string-append "https://archive.xfce.org/src/xfce/" + name "/" (version-major+minor version) - "/src/" name "-" version ".tar.bz2")) + "/" name "-" version ".tar.bz2")) (sha256 (base32 - "162dibl6ipp72x0s35yhk7kkzxd4qimagg5zdkkv5kjgjpa7bhby")))) + "1v77h5634n49idci2jiw0k7jjk0vzpsvgyx2fkp18l39jayykqxz")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -686,7 +680,7 @@ your system in categories, so you can quickly find and launch them.") (define-public xfce4-session (package (name "xfce4-session") - (version "4.14.2") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -694,7 +688,7 @@ your system in categories, so you can quickly find and launch them.") "xfce4-session-" version ".tar.bz2")) (sha256 (base32 - "1bwpylcn7x9i301yz45wvkzah9bncv9b44nf4hh9ln4i1jka9qzv")) + "1dqpgnq1hy9z170aapjglyp6jpyq1iqn5331nph727a82br77wi2")) (modules '((guix build utils))) (snippet '(begin @@ -731,7 +725,7 @@ allows you to shut down the computer from Xfce.") (define-public xfce4-settings (package (name "xfce4-settings") - (version "4.14.0") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -739,7 +733,7 @@ allows you to shut down the computer from Xfce.") name "-" version ".tar.bz2")) (sha256 (base32 - "0g0ipkg2fyg8r1z95ynx0xjr78bp49c2dwh4mli05nmb4gb40c70")) + "1hnx88a8xmi38mdf5gxdvx7n8yax1vzah8hy8g37bijlqx7l18b7")) (patches (search-patches "xfce4-settings-defaults.patch")))) (build-system gnu-build-system) (arguments @@ -758,7 +752,8 @@ allows you to shut down the computer from Xfce.") ("libxklavier" ,libxklavier) ("libxrandr" ,libxrandr) ("libxfce4ui" ,libxfce4ui) - ("upower" ,upower) + ("upower" ,upower) ;; TODO needs upower-glib + ("python" ,python) ;; for xfce4-compose-mail ("xf86-input-libinput" ,xf86-input-libinput))) (home-page "https://www.xfce.org/") (synopsis "Xfce settings manager") @@ -770,7 +765,7 @@ like appearance, display, keyboard and mouse settings.") (define-public thunar (package (name "thunar") - (version "1.8.16") + (version "4.16.2") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -778,13 +773,14 @@ like appearance, display, keyboard and mouse settings.") "thunar-" version ".tar.bz2")) (sha256 (base32 - "0k1w2zwa8z6sc8vi3frva74npks79x79n7q9p7ibwk7irfqkh4r2")))) + "1pbspa31q4kgydjzmssahq3k0wcy10ma466dlsd2y69nqjc0pab7")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) ("intltool" ,intltool))) (inputs `(("exo" ,exo) + ("gobject-introspection" ,gobject-introspection) ("libexif" ,libexif) ("libgudev" ,libgudev) ("libnotify" ,libnotify) @@ -802,7 +798,7 @@ fast.") (define-public thunar-volman (package (name "thunar-volman") - (version "0.9.5") + (version "4.16.0") (source (origin (method url-fetch) @@ -810,7 +806,7 @@ fast.") (version-major+minor version) "/" "thunar-volman-" version ".tar.bz2")) (sha256 - (base32 "0dqqkbhn43hhmhqyx1fnmawpvysdjzw6ln4ryf629wil6dlwd9vy")))) + (base32 "0zaliahfz9ci2md7g6w9mb7z5azi5n56gihbnwyzvds2n8cygh6j")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -833,7 +829,7 @@ and import the new pictures from your camera.") (define-public xfwm4 (package (name "xfwm4") - (version "4.14.3") + (version "4.16.1") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -841,7 +837,7 @@ and import the new pictures from your camera.") "xfwm4-" version ".tar.bz2")) (sha256 (base32 - "1gw3fbiwraylarl1bqbvfh7nxlss5w8w0im5ahfg3a9mkrdfr6w2")))) + "133ip28v6j3x4l413d81ixsisf32sa0xzd54n0nn8g6p9fh4rcmm")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -863,7 +859,7 @@ on the screen.") (define-public xfdesktop (package (name "xfdesktop") - (version "4.14.3") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -871,7 +867,7 @@ on the screen.") "xfdesktop-" version ".tar.bz2")) (sha256 (base32 - "14sp5a4n21prwmh2l5mjq5fjaq7r2pbjxddfx4wzaix8867x1mq6")) + "1bjv2mpkv7zmpzssbvvzh0x4pn8cqm8dvhgsv5i1xwngzspsajwk")) (modules '((guix build utils))) (snippet #~(begin @@ -1007,7 +1003,7 @@ system resources, while still being visually appealing and user friendly.") (define-public xfce4-power-manager (package (name "xfce4-power-manager") - (version "1.7.1") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/xfce/" @@ -1015,7 +1011,7 @@ system resources, while still being visually appealing and user friendly.") "xfce4-power-manager-" version ".tar.bz2")) (sha256 (base32 - "1ki088iyr266cfyq9bmmhhd27wrsrmbhsblyf4yqby03hlvqif3k")))) + "1wrvqiifaxsgcn1kh4vm2hwxi9lgm6mw4zrfld2zl0mm05y5i77b")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config) @@ -1285,7 +1281,7 @@ A plugin for the Xfce panel is also available.") (define-public xfce4-screensaver (package (name "xfce4-screensaver") - (version "0.1.11") + (version "4.16.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/apps/" @@ -1295,7 +1291,7 @@ A plugin for the Xfce panel is also available.") version ".tar.bz2")) (sha256 (base32 - "0xxcvvcch8bqd35ksq8l88a46xnidp59iq4ssyygki0a2vd20h41")))) + "13962rkc7nn3yigv1km8w0z7g41kj2bxmrrwx2f6gnv27qz18kbd")))) (build-system gnu-build-system) (arguments `(#:phases @@ -1505,7 +1501,7 @@ precedence rules, and the following functions and common constants.") (define-public xfce4-cpufreq-plugin (package (name "xfce4-cpufreq-plugin") - (version "1.2.2") + (version "1.2.3") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/panel-plugins/" @@ -1514,7 +1510,7 @@ precedence rules, and the following functions and common constants.") "/xfce4-cpufreq-plugin-" version ".tar.bz2")) (sha256 (base32 - "16748wxy8aa5cxga0dbfrq7kv40alg5yx967r2l6vjapv2w083sh")))) + "1g07rpbq61dbdz0zvvb0xz6ipympxadwknn5y5q3v85k0nr9qfbx")))) (build-system gnu-build-system) (native-inputs `(("intltool" ,intltool) @@ -1922,7 +1918,7 @@ freedesktop.org specification.") (define-public xfce4-stopwatch-plugin (package (name "xfce4-stopwatch-plugin") - (version "0.4.0") + (version "0.5.0") (source (origin (method url-fetch) (uri (string-append "https://archive.xfce.org/src/panel-plugins/" @@ -1931,7 +1927,7 @@ freedesktop.org specification.") "/xfce4-stopwatch-plugin-" version ".tar.bz2")) (sha256 (base32 - "0jfr0ykn97hfngh0hd2wrs9rxswzxaxjv93g6csdp8hnij649nm3")))) + "1q840298jzdqlhc9lw49q32xzdhnbzcgvv69qq5slkc704s5w6vw")))) (build-system gnu-build-system) (native-inputs `(("intltool" ,intltool) diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 3648aeed03..472dfedbb8 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -26,6 +26,8 @@ ;;; Copyright © 2020 Edouard Klein <edk@beaver-labs.com> ;;; Copyright © 2020 Brett Gilio <brettg@gnu.org> ;;; Copyright © 2020 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2021 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2021 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -51,6 +53,7 @@ #:use-module (gnu packages curl) #:use-module (gnu packages docbook) #:use-module (gnu packages documentation) + #:use-module (gnu packages gettext) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) @@ -139,14 +142,14 @@ things the parser might find in the XML document (like start tags).") (define-public libebml (package (name "libebml") - (version "1.4.0") + (version "1.4.1") (source (origin (method url-fetch) (uri (string-append "https://dl.matroska.org/downloads/libebml/" "libebml-" version ".tar.xz")) (sha256 - (base32 "1cy4hbk8qbxn4c6pwvlsvr1rp8vhfach9rwfg4c50qa94nlckaw0")))) + (base32 "0ckhf7wcfwik1c8ilwipdr9p7b58pvqvj8x54l6slqah81lwd53f")))) (build-system cmake-build-system) (arguments `(#:configure-flags @@ -358,6 +361,86 @@ It uses libxml2 to access the XML files.") based on libxml for XML parsing, tree manipulation and XPath support.") (license license:x11))) +(define-public openjade + (package + (name "openjade") + (version "1.3.2") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/openjade/openjade/" + version "/" name "-" version ".tar.gz")) + (sha256 + (base32 + "1l92sfvx1f0wmkbvzv1385y1gb3hh010xksi1iyviyclrjb7jb8x")))) + (build-system gnu-build-system) + (arguments + `(#:configure-flags + (list (string-append "--enable-spincludedir=" + (assoc-ref %build-inputs "opensp") + "/include/OpenSP") + (string-append "--enable-splibdir=" + (assoc-ref %build-inputs "opensp") "/lib") + ;; Workaround segfaults in OpenJade (see: + ;; https://bugs.launchpad.net/ubuntu/+source/openjade/+bug/1869734). + "CXXFLAGS=-O0") + #:parallel-build? #f ;build fails otherwise + ;; The test suite fails with diff errors between the actual and + ;; expected results, like: (char<? #\a #\A) returning #t rather than + ;; #f (see: https://sourceforge.net/p/openjade/bugs/150/). + #:tests? #f + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'replace-deprecated-getopt + ;; See: https://sourceforge.net/p/openjade/bugs/140/. + (lambda _ + (substitute* "msggen.pl" + (("use POSIX;") "use POSIX;\nuse Getopt::Std;") + (("do 'getopts.pl';") "") + (("&Getopts") "getopts")) + #t)) + (add-after 'replace-deprecated-getopt 'fix-locale-lookup + ;; See: https://sourceforge.net/p/openjade/bugs/149/. + (lambda _ + (substitute* "testsuite/expr-lang.dsl" + (("\\(language \"EN\" \"US\"\\)") + "(language \"EN\" \"US.UTF-8\")")) + #t)) + (add-after 'install 'install-doc + (lambda* (#:key outputs #:allow-other-keys) + ;; TODO: Generate the manpage from source, with + ;; openjade-bootstrap and jadetex. See the file docsrc/Makefile. + (let* ((out (assoc-ref outputs "out")) + (man1 (string-append out "/share/man/man1"))) + (install-file "docsrc/openjade.1" man1) + #t))) + (add-after 'install-doc 'install-dtds + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (dtd (string-append out "/sgml/dtd"))) + (mkdir-p dtd) + (copy-recursively "dsssl" dtd) + #t))) + (delete 'check) + (add-after 'install 'check + (lambda* (#:key tests? out #:allow-other-keys) + (if tests? + (with-directory-excursion "testsuite" + (invoke "make")) + (format #t "test suite not run~%")) + #t))))) + (inputs + `(("opensp" ,opensp))) + (native-inputs + `(("perl" ,perl))) + (home-page "http://openjade.sourceforge.net/") + (synopsis "ISO/IEC 10179:1996 standard DSSSL language implementation") + (description "OpenJade is an implementation of Document Style Semantics +and Specification Language (DSSSL), a style language to format SGML or XML +documents. It contains backends for various formats such as RTF, HTML, TeX, +MIF, SGML2SGML, and FOT.") + (license (license:non-copyleft "file://COPYING" + "See COPYING in the distribution.")))) + (define-public perl-graph-readwrite (package (name "perl-graph-readwrite") @@ -2210,6 +2293,95 @@ server using HTTP, and gets back the response as XML. This library provides a modular implementation of XML-RPC for C and C++.") (license (list license:psfl license:expat)))) +(define-public opensp + (package + (name "opensp") + (version "1.5.2") + (source (origin + (method url-fetch) + (uri (string-append "mirror://sourceforge/openjade/opensp/" + version "/OpenSP-" version ".tar.gz")) + (sha256 + (base32 + "1khpasr6l0a8nfz6kcf3s81vgdab8fm2dj291n5r2s53k228kx2p")))) + (outputs '("out" "doc")) + (build-system gnu-build-system) + (native-inputs + `(("docbook-xml" ,docbook-xml-4.1.2) + ("docbook-xsl" ,docbook-xsl) + ("libxml2" ,libxml2) ;for XML_CATALOG_DIR + ("xmlto" ,xmlto) + ;; Dependencies to regenerate the 'configure' script. + ("autoconf" ,autoconf) + ("automake" ,automake) + ("gettext" ,gettext-minimal) + ("libtool" ,libtool))) + (arguments + `( ;; Note: we cannot use '--enable-full-doc-build' as this would require + ;; Openjade, which in turn requires this package. + + ;; Skip the tests that are known to fail (see: + ;; https://sourceforge.net/p/openjade/mailman/message/6182316/) + #:make-flags '("TESTS_THAT_FAIL=") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-docbook-paths + (lambda* (#:key inputs #:allow-other-keys) + (let ((xmldoc (string-append (assoc-ref inputs "docbook-xml") + "/xml/dtd/docbook")) + (xsldoc (string-append (assoc-ref inputs "docbook-xsl") + "/xml/xsl/docbook-xsl-" + ,(package-version docbook-xsl)))) + (substitute* (find-files "docsrc" "\\.xml$") + (("/usr/share/sgml/docbook/xml-dtd-4.1.2") xmldoc) + (("http://.*/docbookx\\.dtd") + (string-append xmldoc "/docbookx.dtd"))) + #t))) + (add-after 'patch-docbook-paths 'delete-configure + ;; The configure script in the release was made with an older + ;; Autoconf and lacks support for the `--docdir' option. + (lambda _ + (delete-file "configure") + #t)) + (add-after 'delete-configure 'honor-docdir + ;; docdir is not honored due to being hardcoded in the various + ;; Makefile.am (see: https://sourceforge.net/p/openjade/bugs/147/). + (lambda _ + (substitute* '("Makefile.am" "doc/Makefile.am" "docsrc/Makefile.am") + (("^docdir = .*") "docdir = @docdir@\n")) + #t)) + (add-after 'delete-configure 'fix-tests-makefile.am + ;; Remove the trailing $(SHELL) from the TESTS_ENVIRONMENT variable + ;; definition. Otherwise, when targets are built using + ;; "$(am__check_pre) $(LOG_DRIVER) [...]", there would be two + ;; $(SHELL) expansion which fails the build. + (lambda _ + (substitute* "tests/Makefile.am" + (("^\tOSGMLNORM=`echo osgmlnorm\\|sed '\\$\\(transform\\)'`\\\\") + "\tOSGMLNORM=`echo osgmlnorm|sed '$(transform)'`") + (("^\t\\$\\(SHELL\\)\n") "")) + #t))))) + ;; $SGML_CATALOG_FILES lists 'catalog' or 'CATALOG' or '*.cat' files found + ;; under the 'sgml' sub-directory of any given package. + (native-search-paths (list (search-path-specification + (variable "SGML_CATALOG_FILES") + (separator ":") + (files '("sgml")) + (file-pattern "^catalog$|^CATALOG$|^.*\\.cat$") + (file-type 'regular)))) + (home-page "http://openjade.sourceforge.net/") + (synopsis "Suite of SGML/XML processing tools") + (description "OpenSP is an object-oriented toolkit for SGML parsing and +entity management. It is a fork of James Clark's SP suite. The tools it +contains can be used to parse, validate, and normalize SGML and XML files. +The central program included in this package is @code{onsgmls}, which replaces +@code{sgmls}, @code{ospam}, @code{ospent}, @code{osgmlnorm}, and @code{osx}.") + (license + ;; expat license with added clause regarding advertising + (license:non-copyleft + "file://COPYING" + "See COPYING in the distribution.")))) + (define-public python-elementpath (package (name "python-elementpath") diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm index 91bd915f71..ed98d1acd3 100644 --- a/gnu/packages/xorg.scm +++ b/gnu/packages/xorg.scm @@ -23,7 +23,7 @@ ;;; Copyright © 2019 Mathieu Othacehe <m.othacehe@gmail.com> ;;; Copyright © 2020 Leo Prikler <leo.prikler@student.tugraz.at> ;;; Copyright © 2020 Florian Pelz <pelzflorian@pelzflorian.de> -;;; Copyright © 2020 Michael Rohleder <mike@rohleder.de> +;;; Copyright © 2020, 2021 Michael Rohleder <mike@rohleder.de> ;;; Copyright © 2020 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2020 Jean-Baptiste Note <jean-baptiste.note@m4x.org> ;;; @@ -6252,14 +6252,14 @@ basic eye-candy effects.") (define-public xpra (package (name "xpra") - (version "4.0.5") + (version "4.0.6") (source (origin (method url-fetch) (uri (string-append "https://www.xpra.org/src/xpra-" version ".tar.xz")) (sha256 - (base32 "11ml66z8vbc0fa567kkmp2j20l5l60aflnkrz5ay8arw3w92nmnz")) + (base32 "1s49y2s75a8a70vj0micnmpic5zv1n32yjxy8fkxsqa6j5njyrww")) (patches (search-patches "xpra-4.0.1-systemd-run.patch")))) (build-system python-build-system) ;; see also http://xpra.org/trac/wiki/Dependencies @@ -6286,6 +6286,9 @@ basic eye-candy effects.") ("xf86-input-keyboard" ,xf86-input-keyboard) ("python-pillow" ,python-pillow) ;; Optional dependencies. + ("libx264" ,libx264) + ("x265" ,x265) + ("libvpx" ,libvpx) ("python-rencode" ,python-rencode) ; For speed. ("python-numpy" ,python-numpy) ("python-pyopengl" ,python-pyopengl) ; Drawing acceleration. diff --git a/gnu/services/base.scm b/gnu/services/base.scm index 945b546607..f6a490f712 100644 --- a/gnu/services/base.scm +++ b/gnu/services/base.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015, 2016 Alex Kost <alezost@gmail.com> ;;; Copyright © 2015, 2016, 2020 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2015 Sou Bunnbu <iyzsong@gmail.com> @@ -279,7 +279,9 @@ system objects."))) (define root-file-system-service-type (shepherd-service-type 'root-file-system - (const %root-file-system-shepherd-service))) + (const %root-file-system-shepherd-service) + (description "Take care of syncing the root file +system and of remounting it read-only when the system shuts down."))) (define (root-file-system-service) "Return a service whose sole purpose is to re-mount read-only the root file @@ -570,7 +572,9 @@ down."))) (requirement '(udev)) (provision '(trng)) (start #~(make-forkexec-constructor '#$rngd-command)) - (stop #~(make-kill-destructor)))))) + (stop #~(make-kill-destructor)))) + (description "Run the @command{rngd} random number generation daemon to +supply entropy to the kernel's pool."))) (define* (rngd-service #:key (rng-tools rng-tools) @@ -597,7 +601,8 @@ to add @var{device} to the kernel's entropy pool. The service will fail if (provision '(host-name)) (start #~(lambda _ (sethostname #$name))) - (one-shot? #t))))) + (one-shot? #t))) + (description "Initialize the machine's host name."))) (define (host-name-service name) "Return a service that sets the host name to @var{name}." @@ -626,7 +631,8 @@ to add @var{device} to the kernel's entropy pool. The service will fail if (display 1 port)))) #t)) (stop #~(const #f))))) - #t)) ;default to UTF-8 + #t ;default to UTF-8 + (description "Ensure the Linux virtual terminals run in UTF-8 mode."))) (define console-keymap-service-type (shepherd-service-type @@ -638,7 +644,10 @@ to add @var{device} to the kernel's entropy pool. The service will fail if (start #~(lambda _ (zero? (system* #$(file-append kbd "/bin/loadkeys") #$@files)))) - (respawn? #f))))) + (respawn? #f))) + (description "@emph{This service is deprecated in favor of the +@code{keyboard-layout} field of @code{operating-system}.} Load the given list +of console keymaps with @command{loadkeys}."))) (define-deprecated (console-keymap-service #:rest files) #f @@ -1341,7 +1350,9 @@ Service Switch}, for an example." (pid (spawn))) (umask mask) pid)))) - (stop #~(make-kill-destructor)))))) + (stop #~(make-kill-destructor)))) + (description "Run the syslog daemon, @command{syslogd}, which is +responsible for logging system messages."))) ;; Snippet adapted from the GNU inetutils manual. (define %default-syslog.conf @@ -2207,7 +2218,8 @@ instance." (when device (restart-on-EINTR (swapoff device))) #f))) - (respawn? #f)))))) + (respawn? #f)))) + (description "Turn on the virtual memory swap area."))) (define (swap-service device) "Return a service that uses @var{device} as a swap device." @@ -2321,7 +2333,9 @@ This service is not part of @var{%base-services}." (requirement '(user-processes udev dbus-system)) (provision (list (symbol-append 'term- (string->symbol virtual-terminal)))) (start #~(make-forkexec-constructor #$kmscon-command)) - (stop #~(make-kill-destructor))))))) + (stop #~(make-kill-destructor))))) + (description "Start the @command{kmscon} virtual terminal emulator for the +Linux @dfn{kernel mode setting} (KMS)."))) (define-record-type* <static-networking> static-networking make-static-networking diff --git a/gnu/services/cups.scm b/gnu/services/cups.scm index e8957c6859..17ed04e58b 100644 --- a/gnu/services/cups.scm +++ b/gnu/services/cups.scm @@ -32,7 +32,7 @@ #:use-module (guix records) #:use-module (guix gexp) #:use-module (ice-9 match) - #:use-module ((srfi srfi-1) #:select (append-map)) + #:use-module ((srfi srfi-1) #:select (append-map find)) #:export (cups-service-type cups-configuration opaque-cups-configuration @@ -50,7 +50,13 @@ ;;; Code: (define %cups-accounts - (list (user-group (name "lp") (system? #t)) + (list (or + ;; The "lp" group should already exist; try to reuse it. + (find (lambda (group) + (and (user-group? group) + (string=? (user-group-name group) "lp"))) + %base-groups) + (user-group (name "lp") (system? #t))) (user-group (name "lpadmin") (system? #t)) (user-account (name "lp") @@ -482,7 +488,7 @@ programs.") (package cups) "The CUPS package.") (extensions - (package-list (list cups-filters epson-inkjet-printer-escpr + (package-list (list brlaser cups-filters epson-inkjet-printer-escpr foomatic-filters hplip-minimal splix)) "Drivers and other extensions to the CUPS package.") (files-configuration diff --git a/gnu/services/networking.scm b/gnu/services/networking.scm index 9ec0f6a9ca..a4d4ac0646 100644 --- a/gnu/services/networking.scm +++ b/gnu/services/networking.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2018, 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 John Darrington <jmd@gnu.org> @@ -14,6 +14,7 @@ ;;; Copyright © 2019 Sou Bunnbu <iyzsong@member.fsf.org> ;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2020 Brice Waegeneire <brice@waegenei.re> +;;; Copyright © 2021 Oleg Pykhalov <go.wigust@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -42,6 +43,7 @@ #:use-module (gnu packages admin) #:use-module (gnu packages base) #:use-module (gnu packages bash) + #:use-module (gnu packages cluster) #:use-module (gnu packages connman) #:use-module (gnu packages freedesktop) #:use-module (gnu packages linux) @@ -192,7 +194,11 @@ yggdrasil-configuration-log-level yggdrasil-configuration-log-to yggdrasil-configuration-json-config - yggdrasil-configuration-package)) + yggdrasil-configuration-package + + keepalived-configuration + keepalived-configuration? + keepalived-service-type)) ;;; Commentary: ;;; @@ -277,7 +283,9 @@ fe80::1%lo0 apps.facebook.com\n") (and (zero? (cdr (waitpid pid))) (read-pid-file #$pid-file))))) (stop #~(make-kill-destructor)))) - isc-dhcp)) + isc-dhcp + (description "Run @command{dhcp}, a Dynamic Host Configuration +Protocol (DHCP) client, on all the non-loopback network interfaces."))) (define-deprecated (dhcp-client-service #:key (dhcp isc-dhcp)) dhcp-client-service-type @@ -552,9 +560,7 @@ make an initial adjustment of more than 1,000 seconds." (constraint-from openntpd-constraint-from (default '())) (constraints-from openntpd-constraints-from - (default '())) - (allow-large-adjustment? openntpd-allow-large-adjustment? - (default #f))) ; upstream default + (default '()))) (define (openntpd-configuration->string config) @@ -586,8 +592,7 @@ make an initial adjustment of more than 1,000 seconds." "\n"))) ;add a trailing newline (define (openntpd-shepherd-service config) - (let ((openntpd (openntpd-configuration-openntpd config)) - (allow-large-adjustment? (openntpd-allow-large-adjustment? config))) + (let ((openntpd (openntpd-configuration-openntpd config))) (define ntpd.conf (plain-file "ntpd.conf" (openntpd-configuration->string config))) @@ -599,10 +604,7 @@ make an initial adjustment of more than 1,000 seconds." (start #~(make-forkexec-constructor (list (string-append #$openntpd "/sbin/ntpd") "-f" #$ntpd.conf - "-d" ;; don't daemonize - #$@(if allow-large-adjustment? - '("-s") - '())) + "-d") ;; don't daemonize ;; When ntpd is daemonized it repeatedly tries to respawn ;; while running, leading shepherd to disable it. To ;; prevent spamming stderr, redirect output to logfile. @@ -1865,4 +1867,43 @@ See yggdrasil -genconf for config options.") (service-extension profile-service-type (compose list yggdrasil-configuration-package)))))) + +;;; +;;; Keepalived +;;; + +(define-record-type* <keepalived-configuration> + keepalived-configuration make-keepalived-configuration + keepalived-configuration? + (keepalived keepalived-configuration-keepalived ;<package> + (default keepalived)) + (config-file keepalived-configuration-config-file ;file-like + (default #f))) + +(define keepalived-shepherd-service + (match-lambda + (($ <keepalived-configuration> keepalived config-file) + (list + (shepherd-service + (provision '(keepalived)) + (documentation "Run keepalived.") + (requirement '(loopback)) + (start #~(make-forkexec-constructor + (list (string-append #$keepalived "/sbin/keepalived") + "--dont-fork" "--log-console" "--log-detail" + "--pid=/var/run/keepalived.pid" + (string-append "--use-file=" #$config-file)) + #:pid-file "/var/run/keepalived.pid" + #:log-file "/var/log/keepalived.log")) + (respawn? #f) + (stop #~(make-kill-destructor))))))) + +(define keepalived-service-type + (service-type (name 'keepalived) + (extensions (list (service-extension shepherd-root-service-type + keepalived-shepherd-service))) + (description + "Run @uref{https://www.keepalived.org/, Keepalived} +routing software."))) + ;;; networking.scm ends here diff --git a/gnu/services/shepherd.scm b/gnu/services/shepherd.scm index 1faeb350df..d2f9776288 100644 --- a/gnu/services/shepherd.scm +++ b/gnu/services/shepherd.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2017 Clément Lassieur <clement@lassieur.org> ;;; Copyright © 2018 Carlo Zancanaro <carlo@zancanaro.id.au> ;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> @@ -119,23 +119,25 @@ ensuring they are started and stopped in the right order."))) (service shepherd-root-service-type '())) (define-syntax shepherd-service-type - (syntax-rules () + (syntax-rules (description) "Return a <service-type> denoting a simple shepherd service--i.e., the type for a service that extends SHEPHERD-ROOT-SERVICE-TYPE and nothing else. When DEFAULT is given, use it as the service's default value." - ((_ service-name proc default) + ((_ service-name proc default (description text)) (service-type (name service-name) (extensions (list (service-extension shepherd-root-service-type (compose list proc)))) - (default-value default))) - ((_ service-name proc) + (default-value default) + (description text))) + ((_ service-name proc (description text)) (service-type (name service-name) (extensions (list (service-extension shepherd-root-service-type - (compose list proc)))))))) + (compose list proc)))) + (description text))))) (define %default-imported-modules ;; Default set of modules imported for a service's consumption. diff --git a/gnu/services/syncthing.scm b/gnu/services/syncthing.scm new file mode 100644 index 0000000000..12ebe7c107 --- /dev/null +++ b/gnu/services/syncthing.scm @@ -0,0 +1,89 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2021 Oleg Pykhalov <go.wigust@gmail.com> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu services syncthing) + #:use-module (gnu packages syncthing) + #:use-module (gnu services) + #:use-module (gnu services shepherd) + #:use-module (guix gexp) + #:use-module (guix records) + #:use-module (ice-9 match) + #:use-module (srfi srfi-1) + #:export (syncthing-configuration + syncthing-configuration? + syncthing-service-type)) + +;;; Commentary: +;;; +;;; This module provides a service definition for the syncthing service. +;;; +;;; Code: + +(define-record-type* <syncthing-configuration> + syncthing-configuration make-syncthing-configuration + syncthing-configuration? + (syncthing syncthing-configuration-syncthing ;<package> + (default syncthing)) + (arguments syncthing-configuration-arguments ;list of strings + (default '())) + (logflags syncthing-configuration-logflags ;number + (default 0)) + (user syncthing-configuration-user ;string + (default #f)) + (group syncthing-configuration-group ;string + (default "users")) + (home syncthing-configuration-home ;string + (default #f))) + +(define syncthing-shepherd-service + (match-lambda + (($ <syncthing-configuration> syncthing arguments logflags user group home) + (list + (shepherd-service + (provision (list (string->symbol (string-append "syncthing-" user)))) + (documentation "Run syncthing.") + (requirement '(loopback)) + (start #~(make-forkexec-constructor + (append (list (string-append #$syncthing "/bin/syncthing") + "-no-browser" + "-no-restart" + (string-append "-logflags=" (number->string #$logflags))) + '#$arguments) + #:user #$user + #:group #$group + #:environment-variables + (append (list (string-append "HOME=" (or #$home (passwd:dir (getpw #$user)))) + "SSL_CERT_DIR=/etc/ssl/certs" + "SSL_CERT_FILE=/etc/ssl/certs/ca-certificates.crt") + (remove (lambda (str) + (or (string-prefix? "HOME=" str) + (string-prefix? "SSL_CERT_DIR=" str) + (string-prefix? "SSL_CERT_FILE=" str))) + (environ))))) + (respawn? #f) + (stop #~(make-kill-destructor))))))) + +(define syncthing-service-type + (service-type (name 'syncthing) + (extensions (list (service-extension shepherd-root-service-type + syncthing-shepherd-service))) + (description + "Run @uref{https://github.com/syncthing/syncthing, Syncthing} +decentralized continuous file system synchronization."))) + +;;; syncthing.scm ends here diff --git a/gnu/services/virtualization.scm b/gnu/services/virtualization.scm index f435630faf..a45da14a80 100644 --- a/gnu/services/virtualization.scm +++ b/gnu/services/virtualization.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2017 Ryan Moe <ryan.moe@gmail.com> ;;; Copyright © 2018, 2020 Ludovic Courtès <ludo@gnu.org> -;;; Copyright © 2020 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2020,2021 Jan (janneke) Nieuwenhuizen <janneke@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -717,7 +717,7 @@ potential infinite waits blocking libvirt.")) (platforms qemu-binfmt-configuration-platforms (default '())) ;safest default (guix-support? qemu-binfmt-configuration-guix-support? - (default #f))) + (default #t))) (define (qemu-platform->binfmt qemu platform) "Return a gexp that evaluates to a binfmt string for PLATFORM, using the @@ -917,7 +917,9 @@ is added to the OS specified in CONFIG." (disk-size (hurd-vm-configuration-disk-size config)) (type (lookup-image-type-by-name 'hurd-qcow2)) (os->image (image-type-constructor type))) - (system-image (os->image os)))) + (system-image + (image (inherit (os->image os)) + (size disk-size))))) (define (hurd-vm-port config base) "Return the forwarded vm port for this childhurd config." diff --git a/gnu/services/web.scm b/gnu/services/web.scm index 855f4e649b..ff7b262b6a 100644 --- a/gnu/services/web.scm +++ b/gnu/services/web.scm @@ -922,19 +922,20 @@ of index files." (define php-fpm-accounts (match-lambda (($ <php-fpm-configuration> php socket user group socket-user socket-group _ _ _ _ _ _) - (list - (user-group (name "php-fpm") (system? #t)) - (user-group - (name group) - (system? #t)) - (user-account - (name user) - (group group) - (supplementary-groups '("php-fpm")) - (system? #t) - (comment "php-fpm daemon user") - (home-directory "/var/empty") - (shell (file-append shadow "/sbin/nologin"))))))) + `(,@(if (equal? group "php-fpm") + '() + (list (user-group (name "php-fpm") (system? #t)))) + ,(user-group + (name group) + (system? #t)) + ,(user-account + (name user) + (group group) + (supplementary-groups '("php-fpm")) + (system? #t) + (comment "php-fpm daemon user") + (home-directory "/var/empty") + (shell (file-append shadow "/sbin/nologin"))))))) (define (default-php-fpm-config socket user group socket-user socket-group pid-file log-file pm display-errors timezone workers-log-file) diff --git a/gnu/system.scm b/gnu/system.scm index c284a18379..90ad368664 100644 --- a/gnu/system.scm +++ b/gnu/system.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2015, 2016 Alex Kost <alezost@gmail.com> ;;; Copyright © 2016 Chris Marusich <cmmarusich@gmail.com> @@ -858,8 +858,8 @@ syntactically correct." (copy-file #$file #$output))))) (define* (operating-system-etc-service os) - "Return a <service> that builds containing the static part of the /etc -directory." + "Return a <service> that builds a directory containing the static part of +the /etc directory." (let* ((login.defs (plain-file "login.defs" (string-append diff --git a/gnu/system/examples/bare-hurd.tmpl b/gnu/system/examples/bare-hurd.tmpl index e4b795ff27..135ed23cb6 100644 --- a/gnu/system/examples/bare-hurd.tmpl +++ b/gnu/system/examples/bare-hurd.tmpl @@ -5,7 +5,7 @@ ;; To build a disk image for a virtual machine, do ;; -;; ./pre-inst-env guix system disk-image --target=i586-pc-gnu \ +;; ./pre-inst-env guix system image --target=i586-pc-gnu \ ;; gnu/system/examples/bare-hurd.tmpl ;; ;; You may run it like so diff --git a/gnu/system/image.scm b/gnu/system/image.scm index 67930750d5..1012fa6158 100644 --- a/gnu/system/image.scm +++ b/gnu/system/image.scm @@ -70,7 +70,7 @@ arm64-disk-image image-with-os - raw-image-type + efi-raw-image-type qcow2-image-type iso-image-type uncompressed-iso-image-type @@ -128,21 +128,21 @@ (label "GUIX_IMAGE") (flags '(boot))))))) -(define arm32-disk-image +(define* (arm32-disk-image #:optional (offset root-offset)) (image (format 'disk-image) (target "arm-linux-gnueabihf") (partitions (list (partition (inherit root-partition) - (offset root-offset)))) + (offset offset)))) ;; FIXME: Deleting and creating "/var/run" and "/tmp" on the overlayfs ;; fails. (volatile-root? #f))) -(define arm64-disk-image +(define* (arm64-disk-image #:optional (offset root-offset)) (image - (inherit arm32-disk-image) + (inherit (arm32-disk-image offset)) (target "aarch64-linux-gnu"))) @@ -157,9 +157,9 @@ set to the given OS." (inherit base-image) (operating-system os))) -(define raw-image-type +(define efi-raw-image-type (image-type - (name 'raw) + (name 'efi-raw) (constructor (cut image-with-os efi-disk-image <>)))) (define qcow2-image-type @@ -189,12 +189,12 @@ set to the given OS." (define arm32-image-type (image-type (name 'arm32-raw) - (constructor (cut image-with-os arm32-disk-image <>)))) + (constructor (cut image-with-os (arm32-disk-image) <>)))) (define arm64-image-type (image-type (name 'arm64-raw) - (constructor (cut image-with-os arm64-disk-image <>)))) + (constructor (cut image-with-os (arm64-disk-image) <>)))) ;; diff --git a/gnu/system/images/novena.scm b/gnu/system/images/novena.scm index c4d25e850e..dfaf2c60ee 100644 --- a/gnu/system/images/novena.scm +++ b/gnu/system/images/novena.scm @@ -52,7 +52,7 @@ (define novena-image-type (image-type (name 'novena-raw) - (constructor (cut image-with-os arm32-disk-image <>)))) + (constructor (cut image-with-os (arm32-disk-image) <>)))) (define novena-barebones-raw-image (image diff --git a/gnu/system/images/pine64.scm b/gnu/system/images/pine64.scm index f0b0c3f50d..63b31399a5 100644 --- a/gnu/system/images/pine64.scm +++ b/gnu/system/images/pine64.scm @@ -57,7 +57,7 @@ (define pine64-image-type (image-type (name 'pine64-raw) - (constructor (cut image-with-os arm64-disk-image <>)))) + (constructor (cut image-with-os (arm64-disk-image) <>)))) (define pine64-barebones-raw-image (image diff --git a/gnu/system/images/pinebook-pro.scm b/gnu/system/images/pinebook-pro.scm index b038e262cb..22997fd742 100644 --- a/gnu/system/images/pinebook-pro.scm +++ b/gnu/system/images/pinebook-pro.scm @@ -51,13 +51,15 @@ (extra-options '("-L")) ; no carrier detect (baud-rate "115200") (term "vt100") - (tty "ttyS0"))) + (tty "ttyS2"))) %base-services)))) (define pinebook-pro-image-type (image-type (name 'pinebook-pro-raw) - (constructor (cut image-with-os arm64-disk-image <>)))) + (constructor (cut image-with-os + (arm64-disk-image (* 9 (expt 2 20))) ;9MiB + <>)))) (define pinebook-pro-barebones-raw-image (image diff --git a/gnu/system/install.scm b/gnu/system/install.scm index e753463473..7fa5c15324 100644 --- a/gnu/system/install.scm +++ b/gnu/system/install.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> @@ -212,7 +212,9 @@ the given target.") ;; 'user-processes' doesn't depend on us. The 'user-file-systems' ;; service will unmount TARGET eventually. (delete-file-recursively - (string-append target #$%backing-directory)))))))) + (string-append target #$%backing-directory)))))) + (description "Make the store copy-on-write, with writes going to \ +the given target."))) (define (cow-store-service) "Return a service that makes the store copy-on-write, such that writes go to diff --git a/gnu/system/linux-container.scm b/gnu/system/linux-container.scm index 4a9cd0efe2..e6fd0f1315 100644 --- a/gnu/system/linux-container.scm +++ b/gnu/system/linux-container.scm @@ -1,6 +1,6 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015 David Thompson <davet@gnu.org> -;;; Copyright © 2016, 2017, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2016, 2017, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2019 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2020 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2020 Google LLC @@ -76,7 +76,10 @@ from OS that are needed on the bare metal and not in a container." doing anything.") (provision '(loopback networking)) (start #~(const #t)))) - #f)) + #f + (description "Provide loopback and networking without actually doing +anything. This service is used by guest systems running in containers, where +networking support is provided by the host."))) (define %nscd-container-caches ;; Similar to %nscd-default-caches but with smaller cache sizes. This allows diff --git a/gnu/system/mapped-devices.scm b/gnu/system/mapped-devices.scm index 559c27bb28..518dbc4fe8 100644 --- a/gnu/system/mapped-devices.scm +++ b/gnu/system/mapped-devices.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019, 2020, 2021 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2017, 2018 Mark H Weaver <mhw@netris.org> ;;; @@ -130,7 +130,8 @@ specifications to 'targets'." (documentation "Map a device node using Linux's device mapper.") (start #~(lambda () #$(open source targets))) (stop #~(lambda _ (not #$(close source targets)))) - (respawn? #f)))))) + (respawn? #f)))) + (description "Map a device node using Linux's device mapper."))) (define (device-mapping-service mapped-device) "Return a service that sets up @var{mapped-device}." diff --git a/gnu/system/shadow.scm b/gnu/system/shadow.scm index a69339bc07..7c57222716 100644 --- a/gnu/system/shadow.scm +++ b/gnu/system/shadow.scm @@ -20,6 +20,7 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu system shadow) + #:use-module ((guix diagnostics) #:select (formatted-message)) #:use-module (guix records) #:use-module (guix gexp) #:use-module (guix store) @@ -34,6 +35,7 @@ #:use-module ((gnu packages admin) #:select (shadow)) #:use-module (gnu packages bash) + #:use-module (ice-9 match) #:use-module (srfi srfi-1) #:use-module (srfi srfi-26) #:use-module (srfi srfi-34) @@ -222,6 +224,44 @@ for a colorful Guile experience.\\n\\n\"))))\n")) (rename-file ".nanorc" ".config/nano/nanorc")) #t)))) +(define (find-duplicates list) + "Find duplicate entries in @var{list}. +Two entries are considered duplicates, if they are @code{equal?} to each other. +This implementation is made asymptotically faster than @code{delete-duplicates} +through the internal use of hash tables." + (let loop ((list list) + ;; We actually modify table in-place, but still allocate it here + ;; so that we only need one level of indentation. + (table (make-hash-table))) + (match list + (() + (hash-fold (lambda (key value seed) + (if (> value 1) + (cons key seed) + seed)) + '() + table)) + ((first . rest) + (hash-set! table first + (1+ (hash-ref table first 0))) + (loop rest table))))) + +(define (assert-unique-account-names users) + (match (find-duplicates (map user-account-name users)) + (() *unspecified*) + (duplicates + (warning + (G_ "the following accounts appear more than once:~{ ~a~}~%") + duplicates)))) + +(define (assert-unique-group-names groups) + (match (find-duplicates (map user-group-name groups)) + (() *unspecified*) + (duplicates + (warning + (G_ "the following groups appear more than once:~{ ~a~}~%") + duplicates)))) + (define (assert-valid-users/groups users groups) "Raise an error if USERS refer to groups not listed in GROUPS." (let ((groups (list->set (map user-group-name groups)))) @@ -281,17 +321,19 @@ of user '~a' is undeclared") <user-group> objects. Raise an error if a user account refers to a undefined group." (define accounts - (filter user-account? accounts+groups)) + (delete-duplicates (filter user-account? accounts+groups) eq?)) (define user-specs (map user-account->gexp accounts)) (define groups - (filter user-group? accounts+groups)) + (delete-duplicates (filter user-group? accounts+groups) eq?)) (define group-specs (map user-group->gexp groups)) + (assert-unique-account-names accounts) + (assert-unique-group-names groups) (assert-valid-users/groups accounts groups) ;; Add users and user groups. diff --git a/gnu/tests/install.scm b/gnu/tests/install.scm index bf94e97c2a..9dbe63f1e4 100644 --- a/gnu/tests/install.scm +++ b/gnu/tests/install.scm @@ -222,7 +222,7 @@ reboot\n") #:imported-modules '((gnu services herd) (gnu installer tests) (guix combinators)))) - (installation-image-type 'raw) + (installation-image-type 'efi-raw) (install-size 'guess) (target-size (* 2200 MiB))) "Run SCRIPT (a shell script following the system installation procedure) in @@ -272,7 +272,7 @@ packages defined in installation-os." "-no-reboot" "-m" "1200" #$@(cond - ((eq? 'raw installation-image-type) + ((eq? 'efi-raw installation-image-type) #~("-drive" ,(string-append "file=" #$image ",if=virtio,readonly"))) |