diff options
| author | Marius Bakke <mbakke@fastmail.com> | 2019-07-12 01:03:53 +0200 |
|---|---|---|
| committer | Marius Bakke <mbakke@fastmail.com> | 2019-07-12 01:03:53 +0200 |
| commit | fb9a23a3f3ad3d7b5b7f03b2007baf27684d6bbd (patch) | |
| tree | afbd3f4f33771c61254b0c3d977092542fbe8009 /gnu | |
| parent | 1c4b72cb34640638e40c5190676e5c8c352d292d (diff) | |
| parent | 5a836ce38c9c29e9c2bd306007347486b90c5064 (diff) | |
| download | guix-fb9a23a3f3ad3d7b5b7f03b2007baf27684d6bbd.tar.gz | |
Merge branch 'master' into core-updates
Conflicts: gnu/local.mk gnu/packages/python-xyz.scm gnu/packages/xml.scm guix/gexp.scm po/guix/POTFILES.in
Diffstat (limited to 'gnu')
66 files changed, 2513 insertions, 674 deletions
diff --git a/gnu/build/linux-container.scm b/gnu/build/linux-container.scm index e86ac606c0..6ccb924861 100644 --- a/gnu/build/linux-container.scm +++ b/gnu/build/linux-container.scm @@ -130,9 +130,14 @@ for the process." "/dev/random" "/dev/urandom" "/dev/tty" - "/dev/ptmx" "/dev/fuse")) + ;; Mount a new devpts instance on /dev/pts. + (when (file-exists? "/dev/ptmx") + (mount* "none" (scope "/dev/pts") "devpts" 0 + "newinstance,mode=0620") + (symlink "/dev/pts/ptmx" (scope "/dev/ptmx"))) + ;; Setup the container's /dev/console by bind mounting the pseudo-terminal ;; associated with standard input when there is one. (let* ((in (current-input-port)) diff --git a/gnu/ci.scm b/gnu/ci.scm index e108b4b15b..4885870e16 100644 --- a/gnu/ci.scm +++ b/gnu/ci.scm @@ -193,9 +193,11 @@ system.") (define channel-build-system ;; Build system used to "convert" a channel instance to a package. (let* ((build (lambda* (store name inputs - #:key instance #:allow-other-keys) + #:key instance system + #:allow-other-keys) (run-with-store store - (channel-instances->derivation (list instance))))) + (channel-instances->derivation (list instance)) + #:system system))) (lower (lambda* (name #:key system instance #:allow-other-keys) (bag (name name) diff --git a/gnu/local.mk b/gnu/local.mk index c8fa44d1cc..b9575ad201 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -299,6 +299,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/llvm.scm \ %D%/packages/lout.scm \ %D%/packages/logging.scm \ + %D%/packages/logo.scm \ %D%/packages/lolcode.scm \ %D%/packages/lsof.scm \ %D%/packages/lua.scm \ @@ -489,6 +490,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/wget.scm \ %D%/packages/wicd.scm \ %D%/packages/wine.scm \ + %D%/packages/wireservice.scm \ %D%/packages/wm.scm \ %D%/packages/wordnet.scm \ %D%/packages/wv.scm \ @@ -564,6 +566,9 @@ GNU_SYSTEM_MODULES = \ %D%/system/uuid.scm \ %D%/system/vm.scm \ \ + %D%/machine.scm \ + %D%/machine/ssh.scm \ + \ %D%/build/accounts.scm \ %D%/build/activation.scm \ %D%/build/bootloader.scm \ @@ -629,7 +634,7 @@ INSTALLER_MODULES = \ %D%/installer/newt/user.scm \ %D%/installer/newt/utils.scm \ %D%/installer/newt/welcome.scm \ - %D%/installer/newt/wifi.scm + %D%/installer/newt/wifi.scm # Always ship the installer modules but compile them only when # ENABLE_INSTALLER is true. @@ -655,6 +660,7 @@ dist_patch_DATA = \ %D%/packages/patches/4store-unset-preprocessor-directive.patch \ %D%/packages/patches/a2ps-CVE-2001-1593.patch \ %D%/packages/patches/a2ps-CVE-2014-0466.patch \ + %D%/packages/patches/a2ps-CVE-2015-8107.patch \ %D%/packages/patches/abiword-explictly-cast-bools.patch \ %D%/packages/patches/abiword-black-drawing-with-gtk322.patch \ %D%/packages/patches/adb-add-libraries.patch \ @@ -728,7 +734,6 @@ dist_patch_DATA = \ %D%/packages/patches/clementine-use-openssl.patch \ %D%/packages/patches/clisp-remove-failing-test.patch \ %D%/packages/patches/clucene-pkgconfig.patch \ - %D%/packages/patches/clx-remove-demo.patch \ %D%/packages/patches/coda-use-system-libs.patch \ %D%/packages/patches/combinatorial-blas-awpm.patch \ %D%/packages/patches/combinatorial-blas-io-fix.patch \ @@ -736,10 +741,11 @@ dist_patch_DATA = \ %D%/packages/patches/cpufrequtils-fix-aclocal.patch \ %D%/packages/patches/crawl-upgrade-saves.patch \ %D%/packages/patches/crda-optional-gcrypt.patch \ + %D%/packages/patches/csvkit-fix-tests.patch \ %D%/packages/patches/clucene-contribs-lib.patch \ %D%/packages/patches/cube-nocheck.patch \ %D%/packages/patches/cursynth-wave-rand.patch \ - %D%/packages/patches/cvs-2017-12836.patch \ + %D%/packages/patches/cvs-CVE-2017-12836.patch \ %D%/packages/patches/dbus-helper-search-path.patch \ %D%/packages/patches/dealii-mpi-deprecations.patch \ %D%/packages/patches/deja-dup-use-ref-keyword-for-iter.patch \ @@ -775,6 +781,7 @@ dist_patch_DATA = \ %D%/packages/patches/evilwm-lost-focus-bug.patch \ %D%/packages/patches/exiv2-CVE-2017-14860.patch \ %D%/packages/patches/exiv2-CVE-2017-14859-14862-14864.patch \ + %D%/packages/patches/expat-CVE-2018-20843.patch \ %D%/packages/patches/extundelete-e2fsprogs-1.44.patch \ %D%/packages/patches/fastcap-mulGlobal.patch \ %D%/packages/patches/fastcap-mulSetup.patch \ @@ -893,8 +900,6 @@ dist_patch_DATA = \ %D%/packages/patches/gpsbabel-qstring.patch \ %D%/packages/patches/grep-timing-sensitive-test.patch \ %D%/packages/patches/groovy-add-exceptionutilsgenerator.patch \ - %D%/packages/patches/grub-binutils-compat.patch \ - %D%/packages/patches/grub-check-error-efibootmgr.patch \ %D%/packages/patches/grub-efi-fat-serial-number.patch \ %D%/packages/patches/gsl-test-i686.patch \ %D%/packages/patches/gspell-dash-test.patch \ @@ -1003,11 +1008,12 @@ dist_patch_DATA = \ %D%/packages/patches/libdrm-symbol-check.patch \ %D%/packages/patches/libexif-CVE-2016-6328.patch \ %D%/packages/patches/libexif-CVE-2017-7544.patch \ - %D%/packages/patches/libgpg-error-gawk-compat.patch \ + %D%/packages/patches/libexif-CVE-2018-20030.patch \ %D%/packages/patches/libgit2-avoid-python.patch \ %D%/packages/patches/libgit2-mtime-0.patch \ %D%/packages/patches/libgnome-encoding.patch \ %D%/packages/patches/libgnomeui-utf8.patch \ + %D%/packages/patches/libgpg-error-gawk-compat.patch \ %D%/packages/patches/libffi-3.2.1-complex-alpha.patch \ %D%/packages/patches/libjxr-fix-function-signature.patch \ %D%/packages/patches/libjxr-fix-typos.patch \ @@ -1178,6 +1184,8 @@ dist_patch_DATA = \ %D%/packages/patches/pixman-CVE-2016-5296.patch \ %D%/packages/patches/plink-1.07-unclobber-i.patch \ %D%/packages/patches/plink-endian-detection.patch \ + %D%/packages/patches/plib-CVE-2011-4620.patch \ + %D%/packages/patches/plib-CVE-2012-4552.patch \ %D%/packages/patches/plotutils-libpng-jmpbuf.patch \ %D%/packages/patches/podofo-cmake-3.12.patch \ %D%/packages/patches/portaudio-audacity-compat.patch \ @@ -1224,6 +1232,7 @@ dist_patch_DATA = \ %D%/packages/patches/python2-pygobject-2-gi-info-type-error-domain.patch \ %D%/packages/patches/python-pygpgme-fix-pinentry-tests.patch \ %D%/packages/patches/python-robotframework-honor-source-date-epoch.patch \ + %D%/packages/patches/python-slugify-depend-on-unidecode.patch \ %D%/packages/patches/python2-subprocess32-disable-input-test.patch \ %D%/packages/patches/python-unittest2-python3-compat.patch \ %D%/packages/patches/python-unittest2-remove-argparse.patch \ diff --git a/gnu/machine.scm b/gnu/machine.scm new file mode 100644 index 0000000000..0b79402b0a --- /dev/null +++ b/gnu/machine.scm @@ -0,0 +1,107 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 David Thompson <davet@gnu.org> +;;; Copyright © 2019 Jakob L. Kreuze <zerodaysfordays@sdf.lonestar.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu machine) + #:use-module (gnu system) + #:use-module (guix derivations) + #:use-module (guix monads) + #:use-module (guix records) + #:use-module (guix store) + #:use-module ((guix utils) #:select (source-properties->location)) + #:export (environment-type + environment-type? + environment-type-name + environment-type-description + environment-type-location + + machine + machine? + this-machine + + machine-system + machine-environment + machine-configuration + machine-display-name + + deploy-machine + machine-remote-eval)) + +;;; Commentary: +;;; +;;; This module provides the types used to declare individual machines in a +;;; heterogeneous Guix deployment. The interface allows users of specify system +;;; configurations and the means by which resources should be provisioned on a +;;; per-host basis. +;;; +;;; Code: + + +;;; +;;; Declarations for resources that can be provisioned. +;;; + +(define-record-type* <environment-type> environment-type + make-environment-type + environment-type? + + ;; Interface to the environment type's deployment code. Each procedure + ;; should take the same arguments as the top-level procedure of this file + ;; that shares the same name. For example, 'machine-remote-eval' should be + ;; of the form '(machine-remote-eval machine exp)'. + (machine-remote-eval environment-type-machine-remote-eval) ; procedure + (deploy-machine environment-type-deploy-machine) ; procedure + + ;; Metadata. + (name environment-type-name) ; symbol + (description environment-type-description ; string + (default #f)) + (location environment-type-location ; <location> + (default (and=> (current-source-location) + source-properties->location)) + (innate))) + + +;;; +;;; Declarations for machines in a deployment. +;;; + +(define-record-type* <machine> machine + make-machine + machine? + this-machine + (system machine-system) ; <operating-system> + (environment machine-environment) ; symbol + (configuration machine-configuration ; configuration object + (default #f))) ; specific to environment + +(define (machine-display-name machine) + "Return the host-name identifying MACHINE." + (operating-system-host-name (machine-system machine))) + +(define (machine-remote-eval machine exp) + "Evaluate EXP, a gexp, on MACHINE. Ensure that all the elements EXP refers to +are built and deployed to MACHINE beforehand." + (let ((environment (machine-environment machine))) + ((environment-type-machine-remote-eval environment) machine exp))) + +(define (deploy-machine machine) + "Monadic procedure transferring the new system's OS closure to the remote +MACHINE, activating it on MACHINE and switching MACHINE to the new generation." + (let ((environment (machine-environment machine))) + ((environment-type-deploy-machine environment) machine))) diff --git a/gnu/machine/ssh.scm b/gnu/machine/ssh.scm new file mode 100644 index 0000000000..a7d1a967ae --- /dev/null +++ b/gnu/machine/ssh.scm @@ -0,0 +1,369 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Jakob L. Kreuze <zerodaysfordays@sdf.lonestar.org> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu machine ssh) + #:use-module (gnu bootloader) + #:use-module (gnu machine) + #:autoload (gnu packages gnupg) (guile-gcrypt) + #:use-module (gnu services) + #:use-module (gnu services shepherd) + #:use-module (gnu system) + #:use-module (guix derivations) + #:use-module (guix gexp) + #:use-module (guix i18n) + #:use-module (guix modules) + #:use-module (guix monads) + #:use-module (guix records) + #:use-module (guix remote) + #:use-module (guix ssh) + #:use-module (guix store) + #:use-module (ice-9 match) + #:use-module (srfi srfi-19) + #:use-module (srfi srfi-35) + #:export (managed-host-environment-type + + machine-ssh-configuration + machine-ssh-configuration? + machine-ssh-configuration + + machine-ssh-configuration-host-name + machine-ssh-configuration-port + machine-ssh-configuration-user + machine-ssh-configuration-session)) + +;;; Commentary: +;;; +;;; This module implements remote evaluation and system deployment for +;;; machines that are accessable over SSH and have a known host-name. In the +;;; sense of the broader "machine" interface, we describe the environment for +;;; such machines as 'managed-host. +;;; +;;; Code: + + +;;; +;;; Parameters for the SSH client. +;;; + +(define-record-type* <machine-ssh-configuration> machine-ssh-configuration + make-machine-ssh-configuration + machine-ssh-configuration? + this-machine-ssh-configuration + (host-name machine-ssh-configuration-host-name) ; string + (port machine-ssh-configuration-port ; integer + (default 22)) + (user machine-ssh-configuration-user ; string + (default "root")) + (identity machine-ssh-configuration-identity ; path to a private key + (default #f)) + (session machine-ssh-configuration-session ; session + (default #f))) + +(define (machine-ssh-session machine) + "Return the SSH session that was given in MACHINE's configuration, or create +one from the configuration's parameters if one was not provided." + (maybe-raise-unsupported-configuration-error machine) + (let ((config (machine-configuration machine))) + (or (machine-ssh-configuration-session config) + (let ((host-name (machine-ssh-configuration-host-name config)) + (user (machine-ssh-configuration-user config)) + (port (machine-ssh-configuration-port config)) + (identity (machine-ssh-configuration-identity config))) + (open-ssh-session host-name + #:user user + #:port port + #:identity identity))))) + + +;;; +;;; Remote evaluation. +;;; + +(define (managed-host-remote-eval machine exp) + "Internal implementation of 'machine-remote-eval' for MACHINE instances with +an environment type of 'managed-host." + (maybe-raise-unsupported-configuration-error machine) + (remote-eval exp (machine-ssh-session machine))) + + +;;; +;;; System deployment. +;;; + +(define (switch-to-system machine) + "Monadic procedure creating a new generation on MACHINE and execute the +activation script for the new system configuration." + (define (remote-exp drv script) + (with-extensions (list guile-gcrypt) + (with-imported-modules (source-module-closure '((guix config) + (guix profiles) + (guix utils))) + #~(begin + (use-modules (guix config) + (guix profiles) + (guix utils)) + + (define %system-profile + (string-append %state-directory "/profiles/system")) + + (let* ((system #$drv) + (number (1+ (generation-number %system-profile))) + (generation (generation-file-name %system-profile number))) + (switch-symlinks generation system) + (switch-symlinks %system-profile generation) + ;; The implementation of 'guix system reconfigure' saves the + ;; load path and environment here. This is unnecessary here + ;; because each invocation of 'remote-eval' runs in a distinct + ;; Guile REPL. + (setenv "GUIX_NEW_SYSTEM" system) + ;; The activation script may write to stdout, which confuses + ;; 'remote-eval' when it attempts to read a result from the + ;; remote REPL. We work around this by forcing the output to a + ;; string. + (with-output-to-string + (lambda () + (primitive-load #$script)))))))) + + (let* ((os (machine-system machine)) + (script (operating-system-activation-script os))) + (mlet* %store-monad ((drv (operating-system-derivation os))) + (machine-remote-eval machine (remote-exp drv script))))) + +;; XXX: Currently, this does NOT attempt to restart running services. This is +;; also the case with 'guix system reconfigure'. +;; +;; See <https://issues.guix.info/issue/33508>. +(define (upgrade-shepherd-services machine) + "Monadic procedure unloading and starting services on the remote as needed +to realize the MACHINE's system configuration." + (define target-services + ;; Monadic expression evaluating to a list of (name output-path) pairs for + ;; all of MACHINE's services. + (mapm %store-monad + (lambda (service) + (mlet %store-monad ((file ((compose lower-object + shepherd-service-file) + service))) + (return (list (shepherd-service-canonical-name service) + (derivation->output-path file))))) + (service-value + (fold-services (operating-system-services (machine-system machine)) + #:target-type shepherd-root-service-type)))) + + (define (remote-exp target-services) + (with-imported-modules '((gnu services herd)) + #~(begin + (use-modules (gnu services herd) + (srfi srfi-1)) + + (define running + (filter live-service-running (current-services))) + + (define (essential? service) + ;; Return #t if SERVICE is essential and should not be unloaded + ;; under any circumstance. + (memq (first (live-service-provision service)) + '(root shepherd))) + + (define (obsolete? service) + ;; Return #t if SERVICE can be safely unloaded. + (and (not (essential? service)) + (every (lambda (requirements) + (not (memq (first (live-service-provision service)) + requirements))) + (map live-service-requirement running)))) + + (define to-unload + (filter obsolete? + (remove (lambda (service) + (memq (first (live-service-provision service)) + (map first '#$target-services))) + running))) + + (define to-start + (remove (lambda (service-pair) + (memq (first service-pair) + (map (compose first live-service-provision) + running))) + '#$target-services)) + + ;; Unload obsolete services. + (for-each (lambda (service) + (false-if-exception + (unload-service service))) + to-unload) + + ;; Load the service files for any new services and start them. + (load-services/safe (map second to-start)) + (for-each start-service (map first to-start)) + + #t))) + + (mlet %store-monad ((target-services target-services)) + (machine-remote-eval machine (remote-exp target-services)))) + +(define (machine-boot-parameters machine) + "Monadic procedure returning a list of 'boot-parameters' for the generations +of MACHINE's system profile, ordered from most recent to oldest." + (define bootable-kernel-arguments + (@@ (gnu system) bootable-kernel-arguments)) + + (define remote-exp + (with-extensions (list guile-gcrypt) + (with-imported-modules (source-module-closure '((guix config) + (guix profiles))) + #~(begin + (use-modules (guix config) + (guix profiles) + (ice-9 textual-ports)) + + (define %system-profile + (string-append %state-directory "/profiles/system")) + + (define (read-file path) + (call-with-input-file path + (lambda (port) + (get-string-all port)))) + + (map (lambda (generation) + (let* ((system-path (generation-file-name %system-profile + generation)) + (boot-parameters-path (string-append system-path + "/parameters")) + (time (stat:mtime (lstat system-path)))) + (list generation + system-path + time + (read-file boot-parameters-path)))) + (reverse (generation-numbers %system-profile))))))) + + (mlet* %store-monad ((generations (machine-remote-eval machine remote-exp))) + (return + (map (lambda (generation) + (match generation + ((generation system-path time serialized-params) + (let* ((params (call-with-input-string serialized-params + read-boot-parameters)) + (root (boot-parameters-root-device params)) + (label (boot-parameters-label params))) + (boot-parameters + (inherit params) + (label + (string-append label " (#" + (number->string generation) ", " + (let ((time (make-time time-utc 0 time))) + (date->string (time-utc->date time) + "~Y-~m-~d ~H:~M")) + ")")) + (kernel-arguments + (append (bootable-kernel-arguments system-path root) + (boot-parameters-kernel-arguments params)))))))) + generations)))) + +(define (install-bootloader machine) + "Create a bootloader entry for the new system generation on MACHINE, and +configure the bootloader to boot that generation by default." + (define bootloader-installer-script + (@@ (guix scripts system) bootloader-installer-script)) + + (define (remote-exp installer bootcfg bootcfg-file) + (with-extensions (list guile-gcrypt) + (with-imported-modules (source-module-closure '((gnu build install) + (guix store) + (guix utils))) + #~(begin + (use-modules (gnu build install) + (guix store) + (guix utils)) + (let* ((gc-root (string-append "/" %gc-roots-directory "/bootcfg")) + (temp-gc-root (string-append gc-root ".new"))) + + (switch-symlinks temp-gc-root gc-root) + + (unless (false-if-exception + (begin + ;; The implementation of 'guix system reconfigure' + ;; saves the load path here. This is unnecessary here + ;; because each invocation of 'remote-eval' runs in a + ;; distinct Guile REPL. + (install-boot-config #$bootcfg #$bootcfg-file "/") + ;; The installation script may write to stdout, which + ;; confuses 'remote-eval' when it attempts to read a + ;; result from the remote REPL. We work around this + ;; by forcing the output to a string. + (with-output-to-string + (lambda () + (primitive-load #$installer))))) + (delete-file temp-gc-root) + (error "failed to install bootloader")) + + (rename-file temp-gc-root gc-root) + #t))))) + + (mlet* %store-monad ((boot-parameters (machine-boot-parameters machine))) + (let* ((os (machine-system machine)) + (bootloader ((compose bootloader-configuration-bootloader + operating-system-bootloader) + os)) + (bootloader-target (bootloader-configuration-target + (operating-system-bootloader os))) + (installer (bootloader-installer-script + (bootloader-installer bootloader) + (bootloader-package bootloader) + bootloader-target + "/")) + (menu-entries (map boot-parameters->menu-entry boot-parameters)) + (bootcfg (operating-system-bootcfg os menu-entries)) + (bootcfg-file (bootloader-configuration-file bootloader))) + (machine-remote-eval machine (remote-exp installer bootcfg bootcfg-file))))) + +(define (deploy-managed-host machine) + "Internal implementation of 'deploy-machine' for MACHINE instances with an +environment type of 'managed-host." + (maybe-raise-unsupported-configuration-error machine) + (mbegin %store-monad + (switch-to-system machine) + (upgrade-shepherd-services machine) + (install-bootloader machine))) + + +;;; +;;; Environment type. +;;; + +(define managed-host-environment-type + (environment-type + (machine-remote-eval managed-host-remote-eval) + (deploy-machine deploy-managed-host) + (name 'managed-host-environment-type) + (description "Provisioning for machines that are accessable over SSH +and have a known host-name. This entails little more than maintaining an SSH +connection to the host."))) + +(define (maybe-raise-unsupported-configuration-error machine) + "Raise an error if MACHINE's configuration is not an instance of +<machine-ssh-configuration>." + (let ((config (machine-configuration machine)) + (environment (environment-type-name (machine-environment machine)))) + (unless (and config (machine-ssh-configuration? config)) + (raise (condition + (&message + (message (format #f (G_ "unsupported machine configuration '~a' +for environment of type '~a'") + config + environment)))))))) diff --git a/gnu/packages/admin.scm b/gnu/packages/admin.scm index 411be40f5b..1c49e4565e 100644 --- a/gnu/packages/admin.scm +++ b/gnu/packages/admin.scm @@ -371,7 +371,7 @@ application (for console or X terminals) and requires ncurses.") (define-public pies (package (name "pies") - (version "1.3") + (version "1.4") (source (origin (method url-fetch) @@ -379,7 +379,7 @@ application (for console or X terminals) and requires ncurses.") version ".tar.bz2")) (sha256 (base32 - "12r7rjjyibjdj08dvwbp0iflfpzl4s0zhn6cr6zj3hwf9gbzgl1g")))) + "14jb4pa4zs26d5j2skxbaypnwhsx2lw8jgj1irrgs03c2dnf7gp6")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases @@ -388,7 +388,7 @@ application (for console or X terminals) and requires ncurses.") ;; Use the right shell when executing user-provided ;; shell commands. (let ((bash (assoc-ref inputs "bash"))) - (substitute* "src/progman.c" + (substitute* '("src/progman.c" "src/comp.c") (("\"/bin/sh\"") (string-append "\"" bash "/bin/sh\""))) #t)))))) @@ -1422,7 +1422,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") (define-public acpica (package (name "acpica") - (version "20190509") + (version "20190703") (source (origin (method url-fetch) (uri (string-append @@ -1430,7 +1430,7 @@ module slots, and the list of I/O ports (e.g. serial, parallel, USB).") version ".tar.gz")) (sha256 (base32 - "17cf5jhcy9wqla5c9s08khqg0pxhar2nmwdcja2jf2srl2a5y2w6")))) + "0kp3ian3lffx9709ajrr3bp6b9cb6c6v1crjziyr8j8pp639jlwz")))) (build-system gnu-build-system) (native-inputs `(("flex" ,flex) ("bison" ,bison))) @@ -1517,20 +1517,20 @@ characters can be replaced as well, as can UTF-8 characters.") (define-public testdisk (package (name "testdisk") - (version "7.0") + (version "7.1") (source (origin (method url-fetch) - (uri (string-append "http://www.cgsecurity.org/testdisk-" + (uri (string-append "https://www.cgsecurity.org/testdisk-" version ".tar.bz2")) (sha256 (base32 - "0ba4wfz2qrf60vwvb1qsq9l6j0pgg81qgf7fh22siaz649mkpfq0")))) + "1zlh44w67py416hkvw6nrfmjickc2d43v51vcli5p374d5sw84ql")))) (build-system gnu-build-system) (inputs `(("ntfs-3g" ,ntfs-3g) ("util-linux" ,util-linux) ("openssl" ,openssl) - ;; FIXME: add reiserfs + ;; FIXME: add reiserfs. ("zlib" ,zlib) ("e2fsprogs" ,e2fsprogs) ("libjpeg" ,libjpeg) @@ -2462,7 +2462,7 @@ in order to be able to find it. (define-public sedsed (package (name "sedsed") - (version "1.0") + (version "1.1") (source (origin (method git-fetch) @@ -2471,11 +2471,10 @@ in order to be able to find it. (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0009lsjsxhqmgaklpwq15hhd94hpiy7r4va69yy0ig3mxi6zbg2z")))) + (base32 "05cl35mwljdb9ynbbsfa8zx6ig8r0xncbg2cir9vwn5manndjj18")))) (build-system python-build-system) (arguments `(#:tests? #f ; no tests - #:python ,python-2 #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-sed-in @@ -2492,29 +2491,30 @@ in order to be able to find it. ;; Just one file to copy around (install-file "sedsed.py" bin) #t))) - (add-after 'install 'symlink + (add-after 'wrap 'symlink ;; Create 'sedsed' symlink to "sedsed.py". (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) (sed (string-append bin "/sedsed")) (sedpy (string-append bin "/sedsed.py"))) - (symlink sedpy sed) + (symlink sedpy sed) #t)))))) - (home-page "http://aurelio.net/projects/sedsed") + (home-page "https://aurelio.net/projects/sedsed") (synopsis "Sed sed scripts") (description - "@code{sedsed} can debug, indent, tokenize and HTMLize your sed(1) script. + "@code{sedsed} can debug, indent, tokenize and HTMLize your @command{sed} +script. -In debug mode it reads your script and add extra commands to it. When +In debug mode, it reads your script and adds extra commands to it. When executed you can see the data flow between the commands, revealing all the -magic sed does on its internal buffers. +magic sed performs on its internal buffers. -In indent mode your script is reformatted with standard spacing. +In indent mode, your script is reformatted with standard spacing. -In tokenize mode you can see the elements of every command you use. +In tokenize mode, you can see the elements of every command you use. -In HTMLize mode your script is converted to a beautiful colored HTML file, +In HTMLize mode, your script is converted to a beautiful colored HTML file, with all the commands and parameters identified for your viewing pleasure. With sedsed you can master any sed script. No more secrets, no more hidden diff --git a/gnu/packages/algebra.scm b/gnu/packages/algebra.scm index 7e66e42f0a..87eadf0338 100644 --- a/gnu/packages/algebra.scm +++ b/gnu/packages/algebra.scm @@ -298,6 +298,20 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.") (license license:gpl2) (home-page "https://pari.math.u-bordeaux.fr/"))) +(define fplll-4-cmh + (package + (inherit fplll) + (name "fplll") + (version "4.0.4") + (source + (origin + (method url-fetch) + (uri (string-append + "http://perso.ens-lyon.fr/damien.stehle/fplll/libfplll-" + version ".tar.gz")) + (sha256 + (base32 "1cbiby7ykis4z84swclpysrljmqhfcllpkcbll1m08rzskgb1a6b")))))) + (define-public cmh (package (name "cmh") @@ -316,7 +330,7 @@ GP2C, the GP to C compiler, translates GP scripts to PARI programs.") ("mpfr" ,mpfr) ("mpc" ,mpc) ("mpfrcx" ,mpfrcx) - ("fplll" ,fplll) + ("fplll" ,fplll-4-cmh) ("pari-gp" ,pari-gp))) (synopsis "Igusa class polynomial computations") (description diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 29dac5b0f1..e5a2d66b2d 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1,7 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016, 2017, 2018 Roel Janssen <roel@gnu.org> -;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; ;;; This file is part of GNU Guix. ;;; @@ -652,7 +652,7 @@ database is exposed as a @code{TxDb} object.") (define-public r-txdb-mmusculus-ucsc-mm10-knowngene (package (name "r-txdb-mmusculus-ucsc-mm10-knowngene") - (version "3.4.4") + (version "3.4.7") (source (origin (method url-fetch) ;; We cannot use bioconductor-uri here because this tarball is @@ -663,7 +663,7 @@ database is exposed as a @code{TxDb} object.") version ".tar.gz")) (sha256 (base32 - "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39")))) + "04impkl8zh1gpwwrpbf19jqznsjrq2306yyhm6cmx6hr1401bd6b")))) (properties `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene"))) (build-system r-build-system) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 719ede495b..92bc532196 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7237,25 +7237,6 @@ BLAST, KEGG, GenBank, MEDLINE and GO.") ;; (LGPLv2.1+) and scripts in samples (which have GPL2 and GPL2+) (license (list license:ruby license:lgpl2.1+ license:gpl2+ )))) -(define-public r-biocinstaller - (package - (name "r-biocinstaller") - (version "1.32.1") - (source (origin - (method url-fetch) - (uri (bioconductor-uri "BiocInstaller" version)) - (sha256 - (base32 - "1s1f9qhyf3mc73ir25x2zlgi9hf45a37lg4z8fbva4i21hqisgsl")))) - (properties - `((upstream-name . "BiocInstaller"))) - (build-system r-build-system) - (home-page "https://bioconductor.org/packages/BiocInstaller") - (synopsis "Install Bioconductor packages") - (description "This package is used to install and update R packages from -Bioconductor, CRAN, and Github.") - (license license:artistic2.0))) - (define-public r-biocviews (package (name "r-biocviews") @@ -13622,10 +13603,10 @@ sequencing data.") (define-public r-xbioc (let ((revision "1") - (commit "f798c187e376fd1ba27abd559f47bbae7e3e466b")) + (commit "6ff0670a37ab3036aaf1d94aa4b208310946b0b5")) (package (name "r-xbioc") - (version (git-version "0.1.15" revision commit)) + (version (git-version "0.1.16" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -13634,13 +13615,13 @@ sequencing data.") (file-name (git-file-name name version)) (sha256 (base32 - "03hffh2f6z71y6l6dqpa5cql3hdaw7zigdi8sm2dzgx379k9rgrr")))) + "0w8bsq5myiwkfhh83nm6is5ichiyvwa1axx2szvxnzq39x6knf66")))) (build-system r-build-system) (propagated-inputs `(("r-annotationdbi" ,r-annotationdbi) ("r-assertthat" ,r-assertthat) ("r-biobase" ,r-biobase) - ("r-biocinstaller" ,r-biocinstaller) + ("r-biocmanager" ,r-biocmanager) ("r-digest" ,r-digest) ("r-pkgmaker" ,r-pkgmaker) ("r-plyr" ,r-plyr) @@ -14067,11 +14048,11 @@ choosing which reads pass the filter.") ;; <https://github.com/jts/nanopolish#installing-a-particular-release>. ;; Also, the differences between release and current version seem to be ;; significant. - (let ((commit "50e8b5cc62f9b46f5445f5c5e8c5ab7263ea6d9d") + (let ((commit "6331dc4f15b9dfabb954ba3fae9d76b6c3ca6377") (revision "1")) (package (name "nanopolish") - (version (git-version "0.10.2" revision commit)) + (version (git-version "0.11.1" revision commit)) (source (origin (method git-fetch) @@ -14081,7 +14062,7 @@ choosing which reads pass the filter.") (recursive? #t))) (file-name (git-file-name name version)) (sha256 - (base32 "09j5gz57yr9i34a27vbl72i4g8syv2zzgmsfyjq02yshmnrvkjs6")) + (base32 "15ikl3d37y49pwd7vx36xksgsqajhf24q7qqsnpl15dqqyy5qgbc")) (modules '((guix build utils))) (snippet '(begin diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm index 6e6e69ff3b..dda258a52e 100644 --- a/gnu/packages/bootloaders.scm +++ b/gnu/packages/bootloaders.scm @@ -82,19 +82,22 @@ (define-public grub (package (name "grub") - (version "2.02") + (version "2.04") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/grub/grub-" version ".tar.xz")) (sha256 (base32 - "03vvdfhdmf16121v7xs8is2krwnv15wpkhkf16a4yf8nsfc3f2w1")) - (patches (search-patches "grub-check-error-efibootmgr.patch" - "grub-binutils-compat.patch" - "grub-efi-fat-serial-number.patch")))) + "0zgp5m3hmc9jh8wpjx6czzkh5id2y8n1k823x2mjvm2sk6b28ag5")) + (patches (search-patches "grub-efi-fat-serial-number.patch")))) (build-system gnu-build-system) (arguments - `(#:phases (modify-phases %standard-phases + `(#:configure-flags + ;; Counterintuitively, this *disables* a spurious Python dependency by + ;; calling the ‘true’ binary instead. Python is only needed during + ;; bootstrapping (for genptl.py), not when building from a release. + (list "PYTHON=true") + #:phases (modify-phases %standard-phases (add-after 'unpack 'patch-stuff (lambda* (#:key inputs #:allow-other-keys) (substitute* "grub-core/Makefile.in" @@ -127,6 +130,14 @@ (substitute* "Makefile.in" (("grub_cmd_date grub_cmd_set_date grub_cmd_sleep") "grub_cmd_date grub_cmd_sleep")) + #t)) + (add-before 'check 'disable-pixel-perfect-test + (lambda _ + ;; This test compares many screenshots rendered with an + ;; older Unifont (9.0.06) than that packaged in Guix. + (substitute* "Makefile.in" + (("test_unset grub_func_test") + "test_unset")) #t))) ;; Disable tests on ARM and AARCH64 platforms. #:tests? ,(not (any (cute string-prefix? <> (or (%current-target-system) @@ -147,9 +158,12 @@ ;; for generating alternative keyboard layouts. ("console-setup" ,console-setup) + ;; Needed for ‘grub-mount’, the only reliable way to tell whether a given + ;; file system will be readable by GRUB without rebooting. + ("fuse" ,fuse) + ("freetype" ,freetype) ;; ("libusb" ,libusb) - ;; ("fuse" ,fuse) ("ncurses" ,ncurses))) (native-inputs `(("pkg-config" ,pkg-config) diff --git a/gnu/packages/chromium.scm b/gnu/packages/chromium.scm index e357556956..70b66ee824 100644 --- a/gnu/packages/chromium.scm +++ b/gnu/packages/chromium.scm @@ -756,9 +756,9 @@ from forcing GEXP-PROMISE." ("valgrind" ,valgrind) ("vulkan-headers" ,vulkan-headers))) - ;; Building Chromium with a single core takes around 6 hours on an x86_64 - ;; system. Give some leeway for slower or busy machines. - (properties '((timeout . 64800))) ;18 hours + ;; Building Chromium takes ... a very long time. On a single core, a busy + ;; mid-end x86 system may need more than 24 hours to complete the build. + (properties '((timeout . 144000))) ;40 hours (home-page "https://github.com/Eloston/ungoogled-chromium") (description diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 578670e3c1..6bfeaad9a2 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -36,6 +36,7 @@ ;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us> ;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2019 Gábor Boskovits <boskovits@gmail.com> +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -92,6 +93,7 @@ #:use-module (gnu packages popt) #:use-module (gnu packages python) #:use-module (gnu packages python-crypto) + #:use-module (gnu packages python-web) #:use-module (gnu packages python-xyz) #:use-module (gnu packages rdf) #:use-module (gnu packages readline) @@ -864,14 +866,14 @@ pictures, sounds, or video.") (package (inherit postgresql) (name "postgresql") - (version "9.6.13") + (version "9.6.14") (source (origin (method url-fetch) (uri (string-append "https://ftp.postgresql.org/pub/source/v" version "/postgresql-" version ".tar.bz2")) (sha256 (base32 - "197964wb5pc5fx81a6mh9hlcrr9sgr3nqlpmljv6asi9aq0d5gpc")))))) + "08hsqczy1ixkjyf2vr3s9x69agfz9yr8lh31fir4z0dfr5jw421z")))))) (define-public python-pymysql (package @@ -3080,3 +3082,24 @@ NumPy, and other traditional Python scientific computing packages.") (define-public python2-pyarrow (package-with-python2 python-pyarrow)) + +(define-public python-crate + (package + (name "python-crate") + (version "0.23.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "crate" version)) + (sha256 + (base32 + "0s3s7yg4m2zflg9q96aibwb5hizsn10ql63fsj6h5z624qkavnlp")))) + (build-system python-build-system) + (propagated-inputs + `(("python-urllib3" ,python-urllib3))) + (home-page "https://github.com/crate/crate-python") + (synopsis "CrateDB Python client") + (description + "This package provides a Python client library for CrateDB. +It implements the Python DB API 2.0 specification and includes support for +SQLAlchemy.") + (license license:asl2.0))) diff --git a/gnu/packages/dictionaries.scm b/gnu/packages/dictionaries.scm index 9f4dc59cc8..d3a3f8d832 100644 --- a/gnu/packages/dictionaries.scm +++ b/gnu/packages/dictionaries.scm @@ -218,7 +218,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.") (define-public grammalecte (package (name "grammalecte") - (version "1.1.1") + (version "1.2") (source (origin (method url-fetch/zipbomb) @@ -226,7 +226,7 @@ It comes with a German-English dictionary with approximately 270,000 entries.") "Grammalecte-fr-v" version ".zip")) (sha256 (base32 - "1al4c3976wgxijxghxqb1banarj82hwad51kln87xj2r5kwcfm05")))) + "0dwizai6w9yn617y7cnqdiwv77vn22p18s9sypypbl1bl695cnma")))) (build-system python-build-system) (home-page "https://grammalecte.net") (synopsis "French spelling and grammar checker") diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm index 06f4430b2d..187ef74b4e 100644 --- a/gnu/packages/disk.scm +++ b/gnu/packages/disk.scm @@ -14,6 +14,7 @@ ;;; Copyright © 2018 Rutger Helling <rhelling@mykolab.com> ;;; Copyright © 2018, 2019 Pierre Neidhardt <mail@ambrevar.xyz> ;;; Copyright © 2019 Leo Famulari <leo@famulari.name> +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -236,7 +237,8 @@ to recover data more efficiently by only reading the necessary blocks.") "0wy13i3i4x2bw1hf5m4fd0myh61f9bcrs035fdlf6gyc1jksrcp6")))) (build-system gnu-build-system) (arguments - `(#:make-flags (list (string-append "PREFIX=" %output) + `(#:configure-flags (list "--enable-compat-symlinks") + #:make-flags (list (string-append "PREFIX=" %output) "CC=gcc"))) (native-inputs `(("xxd" ,xxd))) ; for tests diff --git a/gnu/packages/education.scm b/gnu/packages/education.scm index 2bb61a744a..f3d8907583 100644 --- a/gnu/packages/education.scm +++ b/gnu/packages/education.scm @@ -250,7 +250,7 @@ easy.") (define-public snap (package (name "snap") - (version "5") + (version "5.0.1") (source (origin (method git-fetch) @@ -260,7 +260,7 @@ easy.") (file-name (git-file-name name version)) (sha256 (base32 - "0bh52n7nklaaq02qb56v7bvrslf047my6irl7g8h6xfjgw04yf20")))) + "0ic0xgal19yazbd1kffmbjhiicvvlw5clj48lj80mksa2lgvnzna")))) (build-system trivial-build-system) (arguments `(#:modules ((guix build utils)) diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm index d78025e0a9..f592f1618f 100644 --- a/gnu/packages/emacs-xyz.scm +++ b/gnu/packages/emacs-xyz.scm @@ -2225,18 +2225,20 @@ display and behaviour is easily customisable.") (define-public emacs-git-timemachine (package (name "emacs-git-timemachine") - (version "4.5") + (version "4.10") (source (origin - (method url-fetch) - (uri (string-append "https://gitlab.com/pidu/git-timemachine" - "/-/archive/" version - "/git-timemachine-" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/pidu/git-timemachine.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0ii40qcincasg7s1yrvqcxkqcqzb4sfs7gcxscn6m4x4ans165zy")))) + "08zsn3lsnnf01wkv5ls38jga02s5dnf0j3gigy4qd6im3j3d04m1")))) (build-system emacs-build-system) + (propagated-inputs + `(("emacs-transient" ,emacs-transient))) (home-page "https://gitlab.com/pidu/git-timemachine") (synopsis "Step through historic versions of Git-controlled files") (description "This package enables you to step through historic versions @@ -2575,7 +2577,7 @@ as horizontal rules.") (define-public emacs-simple-httpd (package (name "emacs-simple-httpd") - (version "1.4.6") + (version "1.5.1") (source (origin (method git-fetch) @@ -2584,9 +2586,9 @@ as horizontal rules.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "1qmkc0w28l53zzf5yd2grrk1sq222g5qnsm35ph25s1cfvc1qb2g")))) + (base32 "0dpn92rg813c4pq7a1vzj3znyxzp2lmvxqz6pzcqi0l2xn5r3wvb")))) (build-system emacs-build-system) - (home-page "https://github.com/skeeto/emacs-http-server") + (home-page "https://github.com/skeeto/emacs-web-server") (synopsis "HTTP server in pure Emacs Lisp") (description "This package provides a simple HTTP server written in Emacs Lisp to @@ -2596,7 +2598,7 @@ serve files and directory listings.") (define-public emacs-skewer-mode (package (name "emacs-skewer-mode") - (version "1.6.2") + (version "1.8.0") (source (origin (method git-fetch) @@ -2605,7 +2607,7 @@ serve files and directory listings.") (commit version))) (file-name (git-file-name name version)) (sha256 - (base32 "05jndz0c26q60s416vqgvr66axdmxb7qsr2g70fvl5iqavnayhpv")))) + (base32 "1ha7jl7776pk1bki5zj2q0jy66450mn8xr3aqjc0m9kj3gc9qxgw")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-simple-httpd" ,emacs-simple-httpd) @@ -4075,6 +4077,30 @@ organizer.") It is built on top of the custom theme support in Emacs 24 or later.") (license license:gpl3+))) +(define-public emacs-moe-theme-el + (let ((commit "6e086d855d6bb446bbd1090742815589a81a915f") + (version "1.0") + (revision "1")) + (package + (name "emacs-moe-theme-el") + (version (git-version version revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kuanyui/moe-theme.el") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 "0xj4wfd7h4jqnr193pizm9frf6lmwjr0dsdv2l9mqh9k691z1dnc")))) + (build-system emacs-build-system) + (home-page "https://github.com/kuanyui/moe-theme.el") + (synopsis "Anime-inspired color themes") + (description + "This package provides vibrant color schemes with light and dark +variants.") + (license license:gpl3+)))) + (define-public emacs-solarized-theme (package (name "emacs-solarized-theme") @@ -4523,7 +4549,7 @@ fully-functional one.") (define-public emacs-hydra (package (name "emacs-hydra") - (version "0.14.0") + (version "0.15.0") (source (origin (method git-fetch) @@ -4533,7 +4559,7 @@ fully-functional one.") (file-name (git-file-name name version)) (sha256 (base32 - "0ln4z2796ycy33g5jcxkqvm7638qxy4sipsab7d2864hh700cikg")))) + "0fapvhmhgc9kppf3bvkgry0cd7gyilg7sfvlscfrfjxpx4xvwsfy")))) (build-system emacs-build-system) (home-page "https://github.com/abo-abo/hydra") (synopsis "Make Emacs bindings that stick around") @@ -4757,25 +4783,26 @@ a temporary @code{keep-lines} or @code{occur}.") (license license:gpl3+))) (define-public emacs-zoutline - (let ((commit "b3ee0f0e0b916838c2d2c249beba74ffdb8d5699") - (revision "0")) - (package - (name "emacs-zoutline") - (version (git-version "0.1" revision commit)) - (home-page "https://github.com/abo-abo/zoutline") - (source (origin - (method git-fetch) - (uri (git-reference (url home-page) (commit commit))) - (sha256 - (base32 - "0sd0017piw0dis6dhpq5dkqd3acisxqgipl7dj8gmc1vnswhdwr8")) - (file-name (git-file-name name version)))) - (build-system emacs-build-system) - (synopsis "Simple outline library") - (description - "This library provides helpers for outlines. Outlines allow users to + (package + (name "emacs-zoutline") + (version "0.2.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/abo-abo/zoutline") + (commit version))) + (sha256 + (base32 + "1w0zh6vs7klgivq5r030a82mcfg1zwic4x3fimyiqyg5n8p67hyx")) + (file-name (git-file-name name version)))) + (build-system emacs-build-system) + (home-page "https://github.com/abo-abo/zoutline") + (synopsis "Simple outline library") + (description + "This library provides helpers for outlines. Outlines allow users to navigate code in a tree-like fashion.") - (license license:gpl3+)))) + (license license:gpl3+))) (define-public emacs-lispy (package @@ -4835,6 +4862,36 @@ keybinding style. The provided commands allow for editing Lisp in normal state and will work even without lispy being enabled.") (license license:gpl3+)))) +(define-public emacs-lpy + (let ((commit "553d28f7b6523ae5d44d34852ab770b871b0b0ad") + (version "0.1.0") + (revision "1")) + (package + (name "emacs-lpy") + (version (git-version version revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/abo-abo/lpy") + (commit commit))) + (sha256 + (base32 + "0kl9b3gga18cwv5cq4db8i6b7waj6mp3h2l7qjnp7wq6dpvwhn0i")) + (file-name (git-file-name name version)))) + (propagated-inputs + `(("emacs-zoutline" ,emacs-zoutline) + ("emacs-lispy" ,emacs-lispy))) + (build-system emacs-build-system) + (home-page "https://github.com/abo-abo/lpy") + (synopsis "Modal editing for Python") + (description + "This package provides a minor mode for Python that binds useful +commands to unprefixed keys, such as @code{j} or @code{e}, under certain +circumstances, and leaves the keys untouched outside of those situations, +allowing unprefixed keys to insert their respective characters as expected.") + (license license:gpl3+)))) + (define-public emacs-clojure-mode (package (name "emacs-clojure-mode") @@ -6103,28 +6160,33 @@ Emacs that Evil does not cover properly by default, such as @code{help-mode}, (license license:gpl3+)))) (define-public emacs-goto-chg - (package - (name "emacs-goto-chg") - (version "1.6") - (source - (origin - (method url-fetch) - ;; There is no versioned source. - (uri "https://www.emacswiki.org/emacs/download/goto-chg.el") - (file-name (string-append "goto-chg-" version ".el")) - (sha256 - (base32 - "078d6p4br5vips7b9x4v6cy0wxf6m5ij9gpqd4g33bryn22gnpij")))) - (build-system emacs-build-system) - ;; There is no other home page. - (home-page "https://www.emacswiki.org/emacs/goto-chg.el") - (synopsis "Go to the last change in the Emacs buffer") - (description - "This package provides @code{M-x goto-last-change} command that goes to + (let ((commit "1829a13026c597e358f716d2c7793202458120b5") + (version "1.7.3") + (revision "1")) + (package + (name "emacs-goto-chg") + (version (git-version version revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/emacs-evil/goto-chg") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1y603maw9xwdj3qiarmf1bp13461f9f5ackzicsbynl0i9la3qki")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-undo-tree" ,emacs-undo-tree))) + (home-page "https://github.com/emacs-evil/goto-chg") + (synopsis "Go to the last change in the Emacs buffer") + (description + "This package provides @code{M-x goto-last-change} command that goes to the point of the most recent edit in the current Emacs buffer. When repeated, go to the second most recent edit, etc. Negative argument, @kbd{C-u -}, is used for reverse direction.") - (license license:gpl2+))) + (license license:gpl2+)))) (define-public emacs-janpath-evil-numbers (let ((commit "d988041c1fe6e941dc8d591390750b237f71f524") @@ -8321,13 +8383,13 @@ highlighting.") (license license:gpl3+))) (define-public emacs-restclient - (let ((commit "07a3888bb36d0e29608142ebe743b4362b800f40") - (revision "1")) ;Guix package revision, + (let ((commit "422ee8d8b077dffe65706a0f027ed700b84746bc") + (version "0") + (revision "2")) ;Guix package revision, ;upstream doesn't have official releases (package (name "emacs-restclient") - (version (string-append revision "." - (string-take commit 7))) + (version (git-version version revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -8335,7 +8397,7 @@ highlighting.") (commit commit))) (sha256 (base32 - "00lmjhb5im1kgrp54yipf1h9pshxzgjlg71yf2rq5n973gvb0w0q")) + "067nin7vxkdpffxa0q61ybv7szihhvpdinivmci9qkbb86rs9kkz")) (file-name (git-file-name name version)))) (build-system emacs-build-system) (propagated-inputs @@ -9168,33 +9230,25 @@ contexts. (define-public emacs-polymode (package (name "emacs-polymode") - (version "0.1.5") + (version "0.2") (source (origin (method git-fetch) (uri (git-reference - (url "https://github.com/vspinu/polymode.git") + (url "https://github.com/polymode/polymode.git") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 (base32 - "0wwphs54jx48a3ca6x1qaz56j3j9bg4mv8g2akkffrzbdcb8sbc7")))) + "04v0gnzfsjb50bgly6kvpryx8cyzwjaq2llw4qv9ijw1l6ixmq3b")))) (build-system emacs-build-system) - (arguments - `(#:include (cons* "^modes/.*\\.el$" %default-include) - #:phases - (modify-phases %standard-phases - (add-after 'set-emacs-load-path 'add-modes-subdir-to-load-path - (lambda _ - (setenv "EMACSLOADPATH" - (string-append (getenv "EMACSLOADPATH") - ":" (getcwd) "/modes" ":"))))))) - (home-page "https://github.com/vspinu/polymode") + (home-page "https://github.com/polymode/polymode") (synopsis "Framework for multiple Emacs modes based on indirect buffers") - (description "Polymode is an Emacs package that offers generic support -for multiple major modes inside a single Emacs buffer. It is lightweight, -object oriented and highly extensible. Creating a new polymode typically -takes only a few lines of code. Polymode also provides extensible facilities -for external literate programming tools for exporting, weaving and tangling.") + (description + "Polymode is an Emacs package that offers generic support for multiple +major modes inside a single Emacs buffer. It is lightweight, object oriented +and highly extensible. Creating a new polymode typically takes only a few +lines of code. Polymode also provides extensible facilities for external +literate programming tools for exporting, weaving and tangling.") (license license:gpl3+))) (define-public emacs-polymode-ansible @@ -9226,6 +9280,33 @@ for external literate programming tools for exporting, weaving and tangling.") "Edit YAML files for Ansible containing embedded Jinja2 templating.") (license license:gpl3+)))) +(define-public emacs-polymode-org + (package + (name "emacs-polymode-org") + (version "0.2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/polymode/poly-org.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "04x6apjad4kg30456z1j4ipp64yjgkcaim6hqr6bb0rmrianqhck")))) + (build-system emacs-build-system) + (propagated-inputs + `(("emacs-polymode" ,emacs-polymode))) + (properties '((upstream-name . "poly-org"))) + (home-page "https://github.com/polymode/poly-org") + (synopsis "Polymode definitions for Org mode buffers") + (description + "Provides definitions for @code{emacs-polymode} to support +@code{emacs-org} buffers. Edit source blocks in an Org mode buffer using the +native modes of the blocks' languages while remaining inside the primary Org +buffer.") + (license license:gpl3+))) + (define-public eless (package (name "eless") @@ -10675,33 +10756,30 @@ navigate and display hierarchy structures.") (license license:gpl3+)))) (define-public emacs-md4rd - (let ((commit "c55512c2f7680db2a1e73db6bdf93adecaf40fec") - (revision "1")) - (package - (name "emacs-md4rd") - (version (string-append "0.0.2" "-" revision "." - (string-take commit 7))) - (source (origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/ahungry/md4rd.git") - (commit commit))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "0mvv1mvsrpkrmikcpfqf2zbawnzgq33j6zjdrlv48mcw57xb2ak9")))) - (propagated-inputs - `(("emacs-hierarchy" ,emacs-hierarchy) - ("emacs-request" ,emacs-request) - ("emacs-dash" ,emacs-dash) - ("emacs-s" ,emacs-s) - ("emacs-tree-mode" ,emacs-tree-mode))) - (build-system emacs-build-system) - (home-page "https://github.com/ahungry/md4rd") - (synopsis "Emacs Mode for Reddit") - (description - "This package allows to read Reddit from within Emacs interactively.") - (license license:gpl3+)))) + (package + (name "emacs-md4rd") + (version "0.3.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/ahungry/md4rd.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1n6g6k4adzkkn1g7z4j27s35xy12c1fg2r08gv345ddr3wplq4ri")))) + (propagated-inputs + `(("emacs-hierarchy" ,emacs-hierarchy) + ("emacs-request" ,emacs-request) + ("emacs-dash" ,emacs-dash) + ("emacs-s" ,emacs-s) + ("emacs-tree-mode" ,emacs-tree-mode))) + (build-system emacs-build-system) + (home-page "https://github.com/ahungry/md4rd") + (synopsis "Emacs Mode for Reddit") + (description + "This package allows to read Reddit from within Emacs interactively.") + (license license:gpl3+))) (define-public emacs-pulseaudio-control (let ((commit "7e1a87068379075a5e9ce36c64c686c03d20d379") @@ -12265,12 +12343,10 @@ bookmarks and history.") (license license:gpl3+))) (define-public emacs-stumpwm-mode - (let ((commit "8fbe071d2c6c040794060a354eb377218dc10b35") - (revision "1")) + (let ((commit "5328f85fbf6a8b08c758c17b9435368bf7a68f39")) (package (name "emacs-stumpwm-mode") - (version (string-append "0.0.1-" revision "." - (string-take commit 7))) + (version (git-version "0.0.1" "1" commit)) (source (origin (method git-fetch) (uri (git-reference @@ -12279,7 +12355,7 @@ bookmarks and history.") (file-name (git-file-name name version)) (sha256 (base32 - "1dfwsvz1c8w6j4jp0kzaz78ml3f5dp0a5pvf090kwpbpg176r7iq")))) + "00kf4k8bqadi5s667wb96sn549v2kvw01zwszjrg7nhd805m1ng6")))) (build-system emacs-build-system) (arguments `(#:phases @@ -12552,7 +12628,7 @@ the current upstream.") (define-public emacs-company-restclient (package (name "emacs-company-restclient") - (version "0.1.0") + (version "0.3.0") (source (origin (method git-fetch) @@ -12561,7 +12637,7 @@ the current upstream.") (commit (string-append "v" version)))) (file-name (git-file-name name version)) (sha256 - (base32 "0i1fh5lvqwlgn3g3fzh0xacxyljx6gkryipn133vfkv4jbns51n4")))) + (base32 "0yp0hlrgcr6yy1xkjvfckys2k24x9xg7y6336ma61bdwn5lpv0x0")))) (build-system emacs-build-system) (propagated-inputs `(("emacs-company" ,emacs-company) @@ -13051,14 +13127,14 @@ cohesion with the Emacs Way.") (version "1.1") (source (origin - (method url-fetch) - (uri (string-append - "https://gitlab.com/Ambrevar/emacs-fish-completion/repository/" - "archive.tar.gz?ref=" - version)) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/Ambrevar/emacs-fish-completion.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0bpvifv6c2a65nks6kvarw0hhm37fnyy74wikwf9qq1i20va0fpv")))) + "1pjqnbyjmj64q5nwq1mrdxcls4fp5y0b6zqs785i0s6wdvrm4021")))) (build-system emacs-build-system) (inputs `(("fish" ,fish))) (arguments @@ -13069,6 +13145,7 @@ cohesion with the Emacs Way.") (let ((fish (assoc-ref inputs "fish"))) ;; Specify the absolute file names of the various ;; programs so that everything works out-of-the-box. + (make-file-writable "fish-completion.el") (emacs-substitute-variables "fish-completion.el" ("fish-completion-command" @@ -14912,18 +14989,18 @@ opposed to character-based).") (package (name "emacs-disk-usage") (version "1.3.3") - (home-page "https://gitlab.com/Ambrevar/emacs-disk-usage") (source (origin - (method url-fetch) - (uri (string-append - "https://elpa.gnu.org/packages/disk-usage-" - version - ".el")) + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/Ambrevar/emacs-disk-usage.git") + (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "0h1jwznd41gi0vg830ilfgm01q05zknikzahwasm9cizwm2wyizj")))) + "0hv2gsd8k5fbjgckgiyisq4rn1i7y4rchbjy8kmixjv6mx563bll")))) (build-system emacs-build-system) + (home-page "https://gitlab.com/Ambrevar/emacs-disk-usage") (synopsis "Sort and browse disk usage listings with Emacs") (description "Disk Usage is a file system analyzer: it offers a tabulated view of file listings sorted by size. Directory sizes are computed diff --git a/gnu/packages/game-development.scm b/gnu/packages/game-development.scm index 05a68b717a..7eac935a69 100644 --- a/gnu/packages/game-development.scm +++ b/gnu/packages/game-development.scm @@ -1434,7 +1434,9 @@ joystick support."))) "plib-" version ".tar.gz")) (sha256 (base32 - "0cha71mflpa10vh2l7ipyqk67dq2y0k5xbafwdks03fwdyzj4ns8")))) + "0cha71mflpa10vh2l7ipyqk67dq2y0k5xbafwdks03fwdyzj4ns8")) + (patches (search-patches "plib-CVE-2011-4620.patch" + "plib-CVE-2012-4552.patch")))) (build-system gnu-build-system) (inputs `(("mesa" ,mesa) diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm index 8d4143e1da..92f5abc292 100644 --- a/gnu/packages/gnome.scm +++ b/gnu/packages/gnome.scm @@ -5012,7 +5012,6 @@ to display dialog boxes from the commandline and shell scripts.") ("cairo" ,cairo) ("gdk-pixbuf" ,gdk-pixbuf) ("glib" ,glib) - ("gtk+" ,gtk+) ("json-glib" ,json-glib) ("libinput" ,libinput) ("libx11" ,libx11) @@ -7206,7 +7205,7 @@ is suitable as a default application in a Desktop environment.") ("intltool" ,intltool) ("pkg-config" ,pkg-config))) (inputs - `(("gtksourceview" ,gtksourceview) + `(("gtksourceview" ,gtksourceview-3) ("libsm" ,libsm))) (home-page "https://wiki.gnome.org/Apps/Xpad") (synopsis "Virtual sticky note") @@ -7572,16 +7571,16 @@ views can be printed as PDF or PostScript files, or exported to HTML.") (define-public lollypop (package (name "lollypop") - (version "0.9.521") + (version "1.1.3.1") (source (origin (method url-fetch) (uri (string-append "https://gitlab.gnome.org/World/lollypop/uploads/" - "e4df2ed75c5ed71d64afcc668e579b2a/" + "5a7cd7c72b6d83ae08d0c54c4691f9df/" name "-" version ".tar.xz")) (sha256 (base32 - "0knsqh24siyw98vmiq6b1hzq4y4cazs9f1hq1js9c96hqqj9rvdx")))) + "1r5wn0bja9psz6nr1rcaysdkkwz84rbyzpdfw66cxa6wiy52pkjm")))) (build-system meson-build-system) (arguments `(#:imported-modules ((guix build python-build-system) @@ -7614,6 +7613,7 @@ views can be printed as PDF or PostScript files, or exported to HTML.") ("python" ,python) ("python-beautifulsoup4" ,python-beautifulsoup4) ("python-gst" ,python-gst) + ("python-pil" ,python-pillow) ("python-pycairo" ,python-pycairo) ("python-pygobject" ,python-pygobject) ("python-pylast" ,python-pylast) diff --git a/gnu/packages/gnunet.scm b/gnu/packages/gnunet.scm index f2f8647730..2653645c5d 100644 --- a/gnu/packages/gnunet.scm +++ b/gnu/packages/gnunet.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2016, 2017, 2018, 2019 ng0 <ng0@n0.is> -;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; ;;; This file is part of GNU Guix. @@ -146,14 +146,14 @@ tool to extract metadata from a file and print the results.") (define-public libmicrohttpd (package (name "libmicrohttpd") - (version "0.9.64") + (version "0.9.65") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/libmicrohttpd/libmicrohttpd-" version ".tar.gz")) (sha256 (base32 - "03imzkd1hl2mkkpi84vg5xq9x6b58gwsv86ym85km0lhb7nxi4p7")))) + "1jdk6wigvnkh5bi9if4rik8i9sbvdql61lm8ipgpypyxqmcpjipj")))) (build-system gnu-build-system) (inputs `(("curl" ,curl) diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm index 00608c2c8b..ca5a87997c 100644 --- a/gnu/packages/gnupg.scm +++ b/gnu/packages/gnupg.scm @@ -227,19 +227,21 @@ threads implementation. In contrast to GNU Pth is is based on the system's standard threads implementation. This allows the use of libraries which are not compatible to GNU Pth.") - (license (list license:lgpl3+ license:gpl2+)))) ; dual license + (license (list license:lgpl3+ license:gpl2+)) ; dual license + (properties '((ftp-server . "ftp.gnupg.org") + (ftp-directory . "/gcrypt/npth"))))) (define-public gnupg (package (name "gnupg") - (version "2.2.16") + (version "2.2.17") (source (origin (method url-fetch) (uri (string-append "mirror://gnupg/gnupg/gnupg-" version ".tar.bz2")) (sha256 (base32 - "1jqlzp9b3kpfp1dkjqskm67jjrhvf9nh3lzf45321p7m9d2qvgkc")))) + "056mgy09lvsi03531a437qj58la1j2x1y1scvfi53diris3658mg")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -404,7 +406,9 @@ Because the direct use of GnuPG from an application can be a complicated programming task, it is suggested that all software should try to use GPGME instead. This way bug fixes or improvements can be done at a central place and every application benefits from this.") - (license license:lgpl2.1+))) + (license license:lgpl2.1+) + (properties '((ftp-server . "ftp.gnupg.org") + (ftp-directory . "/gcrypt/gpgme"))))) (define-public qgpgme (package @@ -550,14 +554,14 @@ decrypt messages using the OpenPGP format by making use of GPGME.") (define-public python-gnupg (package (name "python-gnupg") - (version "0.4.3") + (version "0.4.4") (source (origin (method url-fetch) (uri (pypi-uri "python-gnupg" version)) (sha256 (base32 - "03dc8whhvk7ccspbk8vzfhkxli8cd9zfbss5p597g4jldgy8s59d")))) + "03pvjyp6q9pr8qa22i38az06ddzhvzy5kj192hxa3gbhnchg1nj5")))) (build-system python-build-system) (arguments `(#:phases @@ -915,14 +919,14 @@ them to transform your existing public key into a secret key.") (define-public gpa (package (name "gpa") - (version "0.9.10") + (version "0.10.0") (source (origin (method url-fetch) (uri (string-append "mirror://gnupg/gpa/" name "-" version ".tar.bz2")) (sha256 (base32 - "09xphbi2456qynwqq5n0yh0zdmdi2ggrj3wk4hsyh5lrzlvcrff3")))) + "1cbpc45f8qbdkd62p12s3q2rdq6fa5xdzwmcwd3xrj55bzkspnwm")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -938,7 +942,9 @@ them to transform your existing public key into a secret key.") "GPA, the GNU Privacy Assistant, is a graphical user interface for @uref{https://gnupg.org, GnuPG}. It can be used to encrypt, decrypt, and sign files, to verify signatures, and to manage the private and public keys.") - (license license:gpl3+))) + (license license:gpl3+) + (properties '((ftp-server . "ftp.gnupg.org") + (ftp-directory . "/gcrypt/gpa"))))) (define-public parcimonie (package diff --git a/gnu/packages/gnuzilla.scm b/gnu/packages/gnuzilla.scm index 3e556d0b04..7bc29f91af 100644 --- a/gnu/packages/gnuzilla.scm +++ b/gnu/packages/gnuzilla.scm @@ -426,7 +426,7 @@ from forcing GEXP-PROMISE." #:system system #:guile-for-build guile))) -(define %icecat-version "60.7.2-guix1") +(define %icecat-version "60.8.0-guix1") ;; 'icecat-source' is a "computed" origin that generates an IceCat tarball ;; from the corresponding upstream Firefox ESR tarball, using the 'makeicecat' @@ -448,7 +448,7 @@ from forcing GEXP-PROMISE." "firefox-" upstream-firefox-version ".source.tar.xz")) (sha256 (base32 - "1hkaq8mavmn2wphfbrlq3v56jvmvfi2nyvrkjgr28rc01jkqx4ca")))) + "1gkz90clarbhgfxhq91s0is6lw6bfymyjb0xbyyswdg68kcqfcy1")))) (upstream-icecat-base-version "60.7.0") ; maybe older than base-version (upstream-icecat-gnu-version "1") @@ -627,7 +627,7 @@ from forcing GEXP-PROMISE." ("mesa" ,mesa) ("mit-krb5" ,mit-krb5) ;; See <https://bugs.gnu.org/32833> - ;; and related comments in the 'snippet' above. + ;; and related comments in the 'remove-bundled-libraries' phase. ;; UNBUNDLE-ME! ("nspr" ,nspr) ;; UNBUNDLE-ME! ("nss" ,nss) ("sqlite" ,sqlite) @@ -720,7 +720,8 @@ from forcing GEXP-PROMISE." "--with-system-icu" ;; See <https://bugs.gnu.org/32833> - ;; and related comments in the 'snippet' above. + ;; and related comments in the + ;; 'remove-bundled-libraries' phase below. ;; UNBUNDLE-ME! "--with-system-nspr" ;; UNBUNDLE-ME! "--with-system-nss" diff --git a/gnu/packages/gps.scm b/gnu/packages/gps.scm index 75212ed60e..852d095300 100644 --- a/gnu/packages/gps.scm +++ b/gnu/packages/gps.scm @@ -147,7 +147,7 @@ between two other data points.") (define-public gama (package (name "gama") - (version "2.03") + (version "2.06") (source (origin (method url-fetch) @@ -155,7 +155,7 @@ between two other data points.") version ".tar.gz")) (sha256 (base32 - "0d33yyasnx54c6i40rkr9by4qv92rqb8wkmp5r46nz7bbp9kpymv")))) + "06xp3kj099b6m2fsmgcbzgj7xk4j0drsps52m4fr8vc6fglsh44p")))) (build-system gnu-build-system) (arguments '(#:parallel-tests? #f)) ; race condition (native-inputs diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm index f652a94d2e..d479fb6ea9 100644 --- a/gnu/packages/guile-xyz.scm +++ b/gnu/packages/guile-xyz.scm @@ -2348,7 +2348,7 @@ more expressive and flexible than the traditional @code{format} procedure.") ("perl" ,perl) ("pkg-config" ,pkg-config) ("texinfo" ,texinfo) - ("texlive" ,texlive))) + ("texlive" ,(texlive-union (list texlive-generic-epsf))))) (propagated-inputs `(("dbus-glib" ,dbus-glib) ("guile" ,guile-2.2) diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 0e5631bbe3..262bcd31dc 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2017 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2017, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2013, 2015, 2016 Andreas Enge <andreas@enge.fr> ;;; Copyright © 2014, 2015, 2016 Mark H Weaver <mhw@netris.org> ;;; Copyright © 2014, 2015 Alex Kost <alezost@gmail.com> @@ -1032,6 +1032,34 @@ and XMP metadata of images in various formats.") ;; <https://launchpad.net/ubuntu/precise/+source/exiv2/+copyright>. (license license:gpl2+))) +(define-public exiv2-0.26 + (package + (inherit exiv2) + (version "0.26") + (source (origin + (method url-fetch) + (uri (list (string-append "https://www.exiv2.org/builds/exiv2-" + version "-trunk.tar.gz") + (string-append "https://www.exiv2.org/exiv2-" + version ".tar.gz") + (string-append "https://fossies.org/linux/misc/exiv2-" + version ".tar.gz"))) + (patches (search-patches "exiv2-CVE-2017-14860.patch" + "exiv2-CVE-2017-14859-14862-14864.patch")) + (sha256 + (base32 + "1yza317qxd8yshvqnay164imm0ks7cvij8y8j86p1gqi1153qpn7")))) + (build-system gnu-build-system) + (arguments '(#:tests? #f)) ; no `check' target + (propagated-inputs + `(("expat" ,expat) + ("zlib" ,zlib))) + (native-inputs + `(("intltool" ,intltool))) + + ;; People should rely on the newer version, so don't expose it. + (properties `((hidden? . #t))))) + (define-public devil (package (name "devil") diff --git a/gnu/packages/javascript.scm b/gnu/packages/javascript.scm index e7dcd7962d..9e1818dfaf 100644 --- a/gnu/packages/javascript.scm +++ b/gnu/packages/javascript.scm @@ -2,7 +2,7 @@ ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr> -;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; ;;; This file is part of GNU Guix. @@ -417,32 +417,28 @@ external server.") (define-public mujs (package (name "mujs") - (version "1.0.5") + (version "1.0.6") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://git.ghostscript.com/mujs.git") - (commit version))) - (file-name (string-append name "-" version "-checkout")) + (method url-fetch) + (uri (string-append "https://mujs.com/downloads/mujs-" + version ".tar.xz")) (sha256 (base32 - "0pkv26jxwgv5ax0ylfmi4h96h79hj4gvr95218ns8wngnmgr1ny6")))) + "1q9w2dcspfp580pzx7sw7x9gbn8j0ak6dvj75wd1ml3f3q3i43df")))) (build-system gnu-build-system) (arguments '(#:phases (modify-phases %standard-phases (delete 'configure) ; no configure (add-after 'install 'install-shared-library - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (install-file "build/release/libmujs.so" - (string-append out "/lib")))))) + (lambda* (#:key (make-flags '()) #:allow-other-keys) + (apply invoke "make" "install-shared" make-flags)))) #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")) (string-append "CC=gcc")) #:tests? #f)) ; no tests (inputs `(("readline" ,readline))) - (home-page "https://artifex.com/mujs/") + (home-page "https://mujs.com/") (synopsis "JavaScript interpreter written in C") (description "MuJS is a lightweight Javascript interpreter designed for embedding in other software to extend them with scripting capabilities. MuJS diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm index 3da3fd9910..5f2c86b21d 100644 --- a/gnu/packages/linux.scm +++ b/gnu/packages/linux.scm @@ -421,8 +421,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration." It has been modified to remove all non-free binary blobs.") (license license:gpl2))) -(define %linux-libre-version "5.1.16") -(define %linux-libre-hash "055vs2g6z6wx34qvi0aw952x9q3drbj7z27s7g7pks6w730xkga8") +(define %linux-libre-version "5.1.17") +(define %linux-libre-hash "049mij4z1iilrggw6plfdpcj1lnc1vqz5z445ix9677cq1fmiwlh") (define %linux-libre-5.1-patches (list %boot-logo-patch @@ -439,8 +439,8 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre-headers %linux-libre-version %linux-libre-hash)) -(define %linux-libre-4.19-version "4.19.57") -(define %linux-libre-4.19-hash "0p9b27hfbzppxgad9q2g7nvfzv0phzdsk16sqy87q3dglc8wqrqq") +(define %linux-libre-4.19-version "4.19.58") +(define %linux-libre-4.19-hash "0i2mh0zk1h1niba1bpd49bn938sdn3qrwzkqpqzimxnj31xcjhyz") (define %linux-libre-4.19-patches (list %boot-logo-patch @@ -457,8 +457,8 @@ It has been modified to remove all non-free binary blobs.") (make-linux-libre-headers %linux-libre-4.19-version %linux-libre-4.19-hash)) -(define %linux-libre-4.14-version "4.14.132") -(define %linux-libre-4.14-hash "0mvp4izw21f8w5kkk8qm8m8b7qjxbp8hshgffdlh1aik41zvcnyq") +(define %linux-libre-4.14-version "4.14.133") +(define %linux-libre-4.14-hash "16ay2x0r5i96lg4rgcg151352igvwxa7wh98kwdsjbckiw7fhn08") (define-public linux-libre-4.14 (make-linux-libre %linux-libre-4.14-version @@ -471,14 +471,14 @@ It has been modified to remove all non-free binary blobs.") %linux-libre-4.14-hash)) (define-public linux-libre-4.9 - (make-linux-libre "4.9.184" - "0q3ggndwf0rwsb3xv33zl9awkd1803h2l9b4g6d6ps3f2sjxwxwa" + (make-linux-libre "4.9.185" + "1byz9cxvslm45nv01abhzvrm2isdskx5k11gi5rpa39r7lx6bmjp" '("x86_64-linux" "i686-linux") #:configuration-file kernel-config)) (define-public linux-libre-4.4 - (make-linux-libre "4.4.184" - "05v295wk9fid17n5plkx6p9nwz6dvpcn2r7khwsq30sy3pg0vxv5" + (make-linux-libre "4.4.185" + "0df22wqj1nwqp60v8341qcmjhwmdr0hgfraishpc7hic8aqdr4p7" '("x86_64-linux" "i686-linux") #:configuration-file kernel-config #:extra-options @@ -1402,7 +1402,7 @@ that the Ethernet protocol is much simpler than the IP protocol.") (define-public iproute (package (name "iproute2") - (version "5.1.0") + (version "5.2.0") (source (origin (method url-fetch) (uri (string-append @@ -1410,7 +1410,7 @@ that the Ethernet protocol is much simpler than the IP protocol.") version ".tar.xz")) (sha256 (base32 - "1kvvrz5mlpjxqcm7vl6i8w6l1cb2amp6p5xyq006pgzafc49hnnw")))) + "1a2dywa2kam24951byv9pl32mb9z6klh7d4vp8fwfgrm4vn5vfd5")))) (build-system gnu-build-system) (arguments `( ;; There is a test suite, but it wants network namespaces and sudo. diff --git a/gnu/packages/lisp.scm b/gnu/packages/lisp.scm index 8250340467..884d00d935 100644 --- a/gnu/packages/lisp.scm +++ b/gnu/packages/lisp.scm @@ -11,7 +11,7 @@ ;;; Copyright © 2018 Benjamin Slade <slade@jnanam.net> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> -;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2018, 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; Copyright © 2019 Katherine Cox-Buday <cox.katherine.e@gmail.com> ;;; Copyright © 2019 Jesse Gildersleve <jessejohngildersleve@protonmail.com> ;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net> @@ -930,42 +930,30 @@ ANSI-compliant Common Lisp implementations.") (sbcl-package->cl-source-package sbcl-cl-unicode)) (define-public sbcl-clx - (let ((revision "1") - (commit "1c62774b03c1cf3fe6e5cb532df8b14b44c96b95")) - (package - (name "sbcl-clx") - (version (string-append "0.0.0-" revision "." (string-take commit 7))) - (source - (origin - (method git-fetch) - (uri - (git-reference - (url "https://github.com/sharplispers/clx.git") - (commit commit))) - (sha256 - (base32 "0qffag03ns52kwq9xjns2qg1yr0bf3ba507iwq5cmx5xz0b0rmjm")) - (file-name (string-append "clx-" version "-checkout")) - (patches - (list - (search-patch "clx-remove-demo.patch"))) - (modules '((guix build utils))) - (snippet - '(begin - ;; These removed files cause the compiled system to crash when - ;; loading. - (delete-file-recursively "demo") - (delete-file "test/trapezoid.lisp") - (substitute* "clx.asd" - (("\\(:file \"trapezoid\"\\)") "")) - #t)))) - (build-system asdf-build-system/sbcl) - (home-page "http://www.cliki.net/portable-clx") - (synopsis "X11 client library for Common Lisp") - (description "CLX is an X11 client library for Common Lisp. The code was + (package + (name "sbcl-clx") + (version "0.7.5") + (source + (origin + (method git-fetch) + (uri + (git-reference + (url "https://github.com/sharplispers/clx.git") + (commit version))) + (sha256 + (base32 + "1vi67z9hpj5rr4xcmfbfwzmlcc0ah7hzhrmfid6lqdkva238v2wf")) + (file-name (string-append "clx-" version)))) + (build-system asdf-build-system/sbcl) + (native-inputs + `(("fiasco" ,sbcl-fiasco))) + (home-page "http://www.cliki.net/portable-clx") + (synopsis "X11 client library for Common Lisp") + (description "CLX is an X11 client library for Common Lisp. The code was originally taken from a CMUCL distribution, was modified somewhat in order to make it compile and run under SBCL, then a selection of patches were added from other CLXes around the net.") - (license license:x11)))) + (license license:x11))) (define-public cl-clx (sbcl-package->cl-source-package sbcl-clx)) @@ -5863,11 +5851,12 @@ and @code{kqueue(2)}), a pathname library and file-system utilities.") `(("iolib.asdf" ,sbcl-iolib.asdf) ("iolib.conf" ,sbcl-iolib.conf) ("iolib.grovel" ,sbcl-iolib.grovel) - ("iolib.base", sbcl-iolib.base) - ("bordeaux-threads", sbcl-bordeaux-threads) - ("idna", sbcl-idna) - ("swap-bytes", sbcl-swap-bytes) - ("libfixposix", libfixposix))) + ("iolib.base" ,sbcl-iolib.base) + ("bordeaux-threads" ,sbcl-bordeaux-threads) + ("idna" ,sbcl-idna) + ("swap-bytes" ,sbcl-swap-bytes) + ("libfixposix" ,libfixposix) + ("cffi" ,sbcl-cffi))) (native-inputs `(("fiveam" ,sbcl-fiveam))) (arguments @@ -5953,12 +5942,12 @@ floating point values to IEEE 754 binary representation.") (name "sbcl-closure-common") (build-system asdf-build-system/sbcl) (version (git-version "20101006" revision commit)) - (home-page "https://github.com/sharplispers/closure-common") + (home-page "https://common-lisp.net/project/cxml/") (source (origin (method git-fetch) (uri (git-reference - (url home-page) + (url "https://github.com/sharplispers/closure-common") (commit commit))) (file-name (git-file-name name version)) (sha256 @@ -5973,6 +5962,111 @@ Closure is a reference to the web browser it was originally written for.") ;; TODO: License? (license #f)))) +(define-public sbcl-cxml+xml + (let ((commit "00b22bf4c4cf11c993d5866fae284f95ab18e6bf") + (revision "1")) + (package + (name "sbcl-cxml+xml") + (build-system asdf-build-system/sbcl) + (version (git-version "0.0.0" revision commit)) + (home-page "https://common-lisp.net/project/cxml/") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/sharplispers/cxml") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "13kif7rf3gqdycsk9zq0d7y0g9y81krkl0z87k0p2fkbjfgrph37")))) + (inputs + `(("closure-common" ,sbcl-closure-common) + ("puri" ,sbcl-puri) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams))) + (arguments + `(#:asd-file "cxml.asd" + #:asd-system-name "cxml/xml")) + (synopsis "Common Lisp XML parser") + (description "CXML implements a namespace-aware, validating XML 1.0 +parser as well as the DOM Level 2 Core interfaces. Two parser interfaces are +offered, one SAX-like, the other similar to StAX.") + (license license:llgpl)))) + +(define sbcl-cxml+dom + (package + (inherit sbcl-cxml+xml) + (name "sbcl-cxml+dom") + (inputs + `(("closure-common" ,sbcl-closure-common) + ("puri" ,sbcl-puri) + ("cxml+xml" ,sbcl-cxml+xml))) + (arguments + `(#:asd-file "cxml.asd" + #:asd-system-name "cxml/dom")))) + +(define sbcl-cxml+klacks + (package + (inherit sbcl-cxml+xml) + (name "sbcl-cxml+klacks") + (inputs + `(("closure-common" ,sbcl-closure-common) + ("puri" ,sbcl-puri) + ("cxml+xml" ,sbcl-cxml+xml))) + (arguments + `(#:asd-file "cxml.asd" + #:asd-system-name "cxml/klacks")))) + +(define sbcl-cxml+test + (package + (inherit sbcl-cxml+xml) + (name "sbcl-cxml+test") + (inputs + `(("closure-common" ,sbcl-closure-common) + ("puri" ,sbcl-puri) + ("cxml+xml" ,sbcl-cxml+xml))) + (arguments + `(#:asd-file "cxml.asd" + #:asd-system-name "cxml/test")))) + +(define-public sbcl-cxml + (package + (inherit sbcl-cxml+xml) + (name "sbcl-cxml") + (inputs + `(("closure-common" ,sbcl-closure-common) + ("puri" ,sbcl-puri) + ("trivial-gray-streams" ,sbcl-trivial-gray-streams) + ("cxml+dom" ,sbcl-cxml+dom) + ("cxml+klacks" ,sbcl-cxml+klacks) + ("cxml+test" ,sbcl-cxml+test))) + (arguments + `(#:asd-file "cxml.asd" + #:asd-system-name "cxml" + #:phases + (modify-phases %standard-phases + (add-after 'build 'install-dtd + (lambda* (#:key outputs #:allow-other-keys) + (install-file "catalog.dtd" + (string-append + (assoc-ref outputs "out") + "/lib/" (%lisp-type))))) + (add-after 'create-asd 'remove-component + ;; XXX: The original .asd has no components, but our build system + ;; creates an entry nonetheless. We need to remove it for the + ;; generated .asd to load properly. See trivia.trivial for a + ;; similar problem. + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (asd (string-append out "/lib/sbcl/cxml.asd"))) + (substitute* asd + ((" :components +") + "")) + (substitute* asd + ((" *\\(\\(:compiled-file \"cxml--system\"\\)\\)") + "")))))))))) + (define-public sbcl-cl-reexport (let ((commit "312f3661bbe187b5f28536cd7ec2956e91366c3b") (revision "1")) @@ -6092,3 +6186,384 @@ cookie headers, cookie creation, cookie jar creation and more.") (description "Dexador is yet another HTTP client for Common Lisp with neat APIs and connection-pooling. It is meant to supersede Drakma.") (license license:expat)))) + +(define-public sbcl-lisp-namespace + (let ((commit "28107cafe34e4c1c67490fde60c7f92dc610b2e0") + (revision "1")) + (package + (name "sbcl-lisp-namespace") + (build-system asdf-build-system/sbcl) + (version (git-version "0.1" revision commit)) + (home-page "https://github.com/guicho271828/lisp-namespace") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1jw2wykp06z2afb9nm1lgfzll5cjlj36pnknjx614057zkkxq4iy")))) + (inputs + `(("alexandria" ,sbcl-alexandria))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (arguments + `(#:test-asd-file "lisp-namespace.test.asd" + ;; XXX: Component LISP-NAMESPACE-ASD::LISP-NAMESPACE.TEST not found + #:tests? #f)) + (synopsis "LISP-N, or extensible namespaces in Common Lisp") + (description "Common Lisp already has major 2 namespaces, function +namespace and value namespace (or variable namespace), but there are actually +more — e.g., class namespace. +This library offers macros to deal with symbols from any namespace.") + (license license:llgpl)))) + +(define-public sbcl-trivial-cltl2 + (let ((commit "8eec8407df833e8f27df8a388bc10913f16d9e83") + (revision "1")) + (package + (name "sbcl-trivial-cltl2") + (build-system asdf-build-system/sbcl) + (version (git-version "0.1.1" revision commit)) + (home-page "https://github.com/Zulu-Inuoe/trivial-cltl2") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1dyyxz17vqv8hlfwq287gl8xxbvcnq798ajb7p5jdjz91wqf4bgk")))) + (synopsis "Simple CLtL2 compatibility layer for Common Lisp") + (description "This library is a portable compatibility layer around +\"Common Lisp the Language, 2nd +Edition\" (@url{https://www.cs.cmu.edu/Groups/AI/html/cltl/clm/node102.html}) +and it exports symbols from implementation-specific packages.") + (license license:llgpl)))) + +(define-public sbcl-introspect-environment + (let ((commit "fff42f8f8fd0d99db5ad6c5812e53de7d660020b") + (revision "1")) + (package + (name "sbcl-introspect-environment") + (build-system asdf-build-system/sbcl) + (version (git-version "0.1" revision commit)) + (home-page "https://github.com/Bike/introspect-environment") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1i305n0wfmpac63ni4i3vixnnkl8daw5ncxy0k3dv92krgx6qzhp")))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (synopsis "Common Lisp environment introspection portability layer") + (description "This library is a small interface to portable but +nonstandard introspection of Common Lisp environments. It is intended to +allow a bit more compile-time introspection of environments in Common Lisp. + +Quite a bit of information is available at the time a macro or compiler-macro +runs; inlining info, type declarations, that sort of thing. This information +is all standard - any Common Lisp program can @code{(declare (integer x))} and +such. + +This info ought to be accessible through the standard @code{&environment} +parameters, but it is not. Several implementations keep the information for +their own purposes but do not make it available to user programs, because +there is no standard mechanism to do so. + +This library uses implementation-specific hooks to make information available +to users. This is currently supported on SBCL, CCL, and CMUCL. Other +implementations have implementations of the functions that do as much as they +can and/or provide reasonable defaults.") + (license license:wtfpl2)))) + +(define-public sbcl-type-i + (let ((commit "dea233f45f94064105ec09f0767de338f67dcbe2") + (revision "1")) + (package + (name "sbcl-type-i") + (build-system asdf-build-system/sbcl) + (version (git-version "0.1" revision commit)) + (home-page "https://github.com/guicho271828/type-i") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "039g5pbrhh65s0bhr9314gmd2nwc2y5lp2377c5qrc2lxky89qs3")))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("introspect-environment" ,sbcl-introspect-environment) + ("trivia.trivial" ,sbcl-trivia.trivial))) + (native-inputs + `(("fiveam" ,sbcl-fiveam))) + (arguments + `(#:test-asd-file "type-i.test.asd")) + (synopsis "Type inference utility on unary predicates for Common Lisp") + (description "This library tries to provide a way to detect what kind of +type the given predicate is trying to check. This is different from inferring +the return type of a function.") + (license license:llgpl)))) + +(define-public sbcl-optima + (let ((commit "373b245b928c1a5cce91a6cb5bfe5dd77eb36195") + (revision "1")) + (package + (name "sbcl-optima") + (build-system asdf-build-system/sbcl) + (version (git-version "0.1" revision commit)) + (home-page "https://github.com/m2ym/optima") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1yw4ymq7ms89342kkvb3aqxgv0w38m9kd8ikdqxxzyybnkjhndal")))) + (inputs + `(("alexandria" ,sbcl-alexandria) + ("closer-mop" ,sbcl-closer-mop))) + (native-inputs + `(("eos" ,sbcl-eos))) + (arguments + ;; XXX: Circular dependencies: tests depend on optima.ppcre which depends on optima. + `(#:tests? #f + #:test-asd-file "optima.test.asd")) + (synopsis "Optimized pattern matching library for Common Lisp") + (description "Optima is a fast pattern matching library which uses +optimizing techniques widely used in the functional programming world.") + (license license:expat)))) + +(define-public sbcl-fare-quasiquote + (package + (name "sbcl-fare-quasiquote") + (build-system asdf-build-system/sbcl) + (version "20171130") + (home-page "http://common-lisp.net/project/fare-quasiquote") + (source + (origin + (method url-fetch) + (uri (string-append "http://beta.quicklisp.org/archive/fare-quasiquote/" + (date->string (string->date version "~Y~m~d") "~Y-~m-~d") + "/fare-quasiquote-" + version + "-git.tgz")) + (sha256 + (base32 + "00brmh7ndsi0c97nibi8cy10j3l4gmkyrfrr5jr5lzkfb7ngyfqa")))) + (inputs + `(("fare-utils" ,sbcl-fare-utils))) + (arguments + ;; XXX: Circular dependencies: Tests depend on subsystems, which depend on the main systems. + `(#:tests? #f + #:phases + (modify-phases %standard-phases + ;; XXX: Require 1.0.0 version of fare-utils, and we package some + ;; commits after 1.0.0.5, but ASDF fails to read the + ;; "-REVISION-COMMIT" part generated by Guix. + (add-after 'unpack 'patch-requirement + (lambda _ + (substitute* "fare-quasiquote.asd" + (("\\(:version \"fare-utils\" \"1.0.0\"\\)") "\"fare-utils\""))))))) + (synopsis "Pattern-matching friendly implementation of quasiquote for Common Lisp") + (description "The main purpose of this n+2nd reimplementation of +quasiquote is enable matching of quasiquoted patterns, using Optima or +Trivia.") + (license license:expat))) + +(define-public sbcl-fare-quasiquote-readtable + (package + (inherit sbcl-fare-quasiquote) + (name "sbcl-fare-quasiquote-readtable") + (inputs + `(("fare-quasiquote" ,sbcl-fare-quasiquote) + ("named-readtables" ,sbcl-named-readtables))) + (description "The main purpose of this n+2nd reimplementation of +quasiquote is enable matching of quasiquoted patterns, using Optima or +Trivia. + +This packages uses fare-quasiquote with named-readtable."))) + +(define-public sbcl-trivia.level0 + (let ((commit "902e0c65602bbfe96ae82e679330b3771ddc7603") + (revision "1")) + (package + (name "sbcl-trivia.level0") + (build-system asdf-build-system/sbcl) + (version (git-version "0.0.0" revision commit)) + (home-page "https://github.com/guicho271828/trivia") + (source + (origin + (method git-fetch) + (uri (git-reference + (url home-page) + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "11qbab30qqnfy9mx3x9fvgcw1jbvh1qn2cqv3p8xdn2m8981jvhr")))) + (inputs + `(("alexandria" ,sbcl-alexandria))) + (synopsis "Pattern matching in Common Lisp") + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima.") + (license license:llgpl)))) + +(define-public sbcl-trivia.level1 + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.level1") + (inputs + `(("trivia.level0" ,sbcl-trivia.level0))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the core patterns of Trivia."))) + +(define-public sbcl-trivia.level2 + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.level2") + (inputs + `(("trivia.level1" ,sbcl-trivia.level1) + ("lisp-namespace" ,sbcl-lisp-namespace) + ("trivial-cltl2" ,sbcl-trivial-cltl2) + ("closer-mop" ,sbcl-closer-mop))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains a non-optimized pattern matcher compatible with Optima, +with extensible optimizer interface."))) + +(define-public sbcl-trivia.trivial + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.trivial") + (inputs + `(("trivia.level2" ,sbcl-trivia.level2))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'create-asd-file + (lambda* (#:key outputs inputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (lib (string-append out "/lib/" (%lisp-type))) + (level2 (assoc-ref inputs "trivia.level2"))) + (mkdir-p lib) + (install-file "trivia.trivial.asd" lib) + ;; XXX: This .asd does not have any component and the build + ;; system fails to work in this case. We should update the + ;; build system to handle component-less .asd. + ;; TODO: How do we append to file in Guile? It seems that + ;; (open-file ... "a") gets a "Permission denied". + (substitute* (string-append lib "/trivia.trivial.asd") + (("\"\\)") + (string-append "\") + +(progn (asdf/source-registry:ensure-source-registry) + (setf (gethash + \"trivia.level2\" + asdf/source-registry:*source-registry*) + #p\"" + level2 + "/share/common-lisp/sbcl-bundle-systems/trivia.level2.asd\"))"))))))))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the base level system of Trivia with a trivial optimizer."))) + +(define-public sbcl-trivia.balland2006 + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.balland2006") + (inputs + `(("trivia.trivial" ,sbcl-trivia.trivial) + ("iterate" ,sbcl-iterate) + ("type-i" ,sbcl-type-i) + ("alexandria" ,sbcl-alexandria))) + (arguments + ;; Tests are done in trivia itself. + `(#:tests? #f)) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the base level system of Trivia with a trivial optimizer."))) + +(define-public sbcl-trivia.ppcre + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.ppcre") + (inputs + `(("trivia.trivial" ,sbcl-trivia.trivial) + ("cl-ppcre" ,sbcl-cl-ppcre))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the PPCRE extention."))) + +(define-public sbcl-trivia.quasiquote + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.quasiquote") + (inputs + `(("trivia.trivial" ,sbcl-trivia.trivial) + ("fare-quasiquote" ,sbcl-fare-quasiquote) + ("fare-quasiquote-readtable" ,sbcl-fare-quasiquote-readtable))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the fare-quasiquote extension."))) + +(define-public sbcl-trivia.cffi + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia.cffi") + (inputs + `(("cffi" ,sbcl-cffi) + ("trivia.trivial" ,sbcl-trivia.trivial))) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima. + +This system contains the CFFI foreign slot access extension."))) + +(define-public sbcl-trivia + (package + (inherit sbcl-trivia.level0) + (name "sbcl-trivia") + (inputs + `(("trivia.balland2006" ,sbcl-trivia.balland2006))) + (native-inputs + `(("fiveam" ,sbcl-fiveam) + ("trivia.ppcre" ,sbcl-trivia.ppcre) + ("trivia.quasiquote" ,sbcl-trivia.quasiquote) + ("trivia.cffi" ,sbcl-trivia.cffi) + ("optima" ,sbcl-optima))) + (arguments + `(#:test-asd-file "trivia.test.asd")) + (description "Trivia is a pattern matching compiler that is compatible +with Optima, another pattern matching library for Common Lisp. It is meant to +be faster and more extensible than Optima."))) diff --git a/gnu/packages/llvm.scm b/gnu/packages/llvm.scm index 0315740bcd..1fe9af38e0 100644 --- a/gnu/packages/llvm.scm +++ b/gnu/packages/llvm.scm @@ -6,7 +6,7 @@ ;;; Copyright © 2016, 2018, 2019 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2018, 2019 Marius Bakke <mbakke@fastmail.com> -;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2018 Tim Gesthuizen <tim.gesthuizen@yahoo.de> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> @@ -332,12 +332,12 @@ requirements according to version 1.1 of the OpenCL specification.") (version (package-version llvm)) (source (origin (method url-fetch) - (uri (string-append "http://releases.llvm.org/" + (uri (string-append "https://releases.llvm.org/" version "/openmp-" version ".src.tar.xz")) (sha256 (base32 - "030dkg5cypd7j9hq0mcqb5gs31lxwmzfq52j81l7v9ldcy5bf5mz")) + "1mf9cpgvix34xlpv0inkgl3qmdvgvp96f7sksqizri0n5xfp1cgp")) (file-name (string-append "libomp-" version ".tar.xz")))) (build-system cmake-build-system) ;; XXX: Note this gets built with GCC because building with Clang itself diff --git a/gnu/packages/logo.scm b/gnu/packages/logo.scm new file mode 100644 index 0000000000..17c3990a94 --- /dev/null +++ b/gnu/packages/logo.scm @@ -0,0 +1,71 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Arun Isaac <arunisaac@systemreboot.net> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages logo) + #:use-module (gnu packages qt) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix download) + #:use-module (guix packages) + #:use-module (guix build-system gnu)) + +(define-public qlogo + (package + (name "qlogo") + (version "0.92") + (source + (origin + (method url-fetch) + (uri (string-append "https://qlogo.org/assets/sources/QLogo-" + version ".tgz")) + (sha256 + (base32 + "0cpyj1ji6hjy7zzz05672f0j6fr0mwpc1y3sq36hhkv2fkpidw22")))) + (build-system gnu-build-system) + (inputs + `(("qtbase" ,qtbase))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "QLogo.pro" + (("target\\.path = /usr/bin") + (string-append "target.path = " + (assoc-ref outputs "out") "/bin"))) + (invoke "qmake" "QLogo.pro"))) + ;; The check phase rebuilds the source for tests. So, it needs to be + ;; run after the install phase has installed the outputs of the build + ;; phase. + (delete 'check) + (add-after 'install 'check + (lambda _ + ;; Clean files created by the build phase. + (invoke "make" "clean") + ;; QLogo tries to create its "dribble file" in the home + ;; directory. So, set HOME. + (setenv "HOME" "/tmp") + ;; Build and run tests. + (invoke "qmake" "TestQLogo.pro") + (invoke "make" "-j" (number->string (parallel-job-count))) + (invoke "./testqlogo")))))) + (home-page "https://qlogo.org") + (synopsis "Logo interpreter using Qt and OpenGL") + (description "QLogo is an interpreter for the Logo language written in C++ +using Qt and OpenGL. Specifically, it mimics, as reasonably as possible, the +UCBLogo interpreter.") + (license license:gpl2+))) diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 6ab0f9358e..8aab46aa20 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -1173,15 +1173,17 @@ which can add many functionalities to the base client.") "--with-tls=gnutls") #:phases (modify-phases %standard-phases - (add-after 'install 'install-msmtpq + (add-after 'install 'install-additional-files (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) (doc (string-append out "/share/doc/msmtp")) - (msmtpq (string-append "scripts/msmtpq"))) + (msmtpq "scripts/msmtpq") + (vimfiles (string-append out "/share/vim/vimfiles/plugin"))) (install-file (string-append msmtpq "/msmtpq") bin) (install-file (string-append msmtpq "/msmtp-queue") bin) (install-file (string-append msmtpq "/README.msmtpq") doc) + (install-file "scripts/vim/msmtp.vim" vimfiles) #t)))))) (synopsis "Simple and easy to use SMTP client with decent sendmail compatibility") @@ -2813,8 +2815,8 @@ replacement for the @code{urlview} program.") (license gpl2+))) (define-public mumi - (let ((commit "ea5a738010148284aed211da953ad670003aefea") - (revision "3")) + (let ((commit "ea0a28f8d5db5761765eb60043b8593901552e25") + (revision "4")) (package (name "mumi") (version (git-version "0.0.0" revision commit)) @@ -2826,7 +2828,7 @@ replacement for the @code{urlview} program.") (file-name (git-file-name name version)) (sha256 (base32 - "0ci5x8dqjmp74w33q2dbs5csxp4ilfmc1xxaa8q2jnh52d7597hl")))) + "0b6dmi41vhssyf983blgi8a2kj3zjccc9cz7b7kvwh781ldqcywh")))) (build-system gnu-build-system) (arguments `(#:phases diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm index 66ef122354..a2c2e01661 100644 --- a/gnu/packages/music.scm +++ b/gnu/packages/music.scm @@ -3739,7 +3739,7 @@ audio samples and various soft sythesizers. It can receive input from a MIDI ke (define-public musescore (package (name "musescore") - (version "3.2") + (version "3.2.3") (source (origin (method git-fetch) (uri (git-reference @@ -3748,7 +3748,7 @@ audio samples and various soft sythesizers. It can receive input from a MIDI ke (file-name (git-file-name name version)) (sha256 (base32 - "0719p4hjlq7skga8q4hvnd5w33vhrd1a1aygvqm9pn4na02zazy6")) + "17wx1wl8ns2k31qvrr888dxnrsa13vazg04zh2sn2q4vzd869a7v")) (modules '((guix build utils))) (snippet ;; Un-bundle OpenSSL and remove unused libraries. diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index 3281387253..53c11f6d95 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -1870,14 +1870,14 @@ displays the results in real time.") (define-public strongswan (package (name "strongswan") - (version "5.6.3") + (version "5.8.0") (source (origin (method url-fetch) (uri (string-append "https://download.strongswan.org/strongswan-" version ".tar.bz2")) (sha256 - (base32 "095zg7h7qwsc456sqgwb1lhhk29ac3mk5z9gm6xja1pl061driy3")))) + (base32 "0cq9m86ydd2i0awxkv4a256f4926p2f9pzlisyskl9fngl6f3c8m")))) (build-system gnu-build-system) (arguments `(#:phases @@ -2210,6 +2210,9 @@ widely used protocol for monitoring the health and welfare of network equipment (e.g. routers), computer equipment and even devices like UPSs. Net-SNMP is a suite of applications used to implement SNMP v1, SNMP v2c and SNMP v3 using both IPv4 and IPv6.") + ;; This only affects OpenBSD + ;; https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2015-8100 + (properties `((lint-hidden-cve . ("CVE-2015-8100")))) (license (list license:bsd-3 (license:non-copyleft "http://www.net-snmp.org/about/license.html" diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index d10c8f2742..bde4f4f553 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -563,16 +563,16 @@ transactions from C or Python.") (define-public diffoscope (package (name "diffoscope") - (version (git-version "115" "1" "7f3416ffd12572b42c814e43ac15cee44ef48155")) + (version "116") (source (origin (method git-fetch) (uri (git-reference (url "https://salsa.debian.org/reproducible-builds/diffoscope.git") - (commit "7f3416ffd12572b42c814e43ac15cee44ef48155"))) + (commit "116"))) (file-name (git-file-name name version)) (sha256 (base32 - "1pn2rwlz5shdx7s63798wx2v7029bl5if6dlq3i2r6zsnpp0laki")))) + "1anz2c112y0w21mh7xp6bs6z7v10dcy1i25nypkvqy3j929m0g28")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/patches/a2ps-CVE-2015-8107.patch b/gnu/packages/patches/a2ps-CVE-2015-8107.patch new file mode 100644 index 0000000000..5ea35d45da --- /dev/null +++ b/gnu/packages/patches/a2ps-CVE-2015-8107.patch @@ -0,0 +1,80 @@ +https://sources.debian.org/data/main/a/a2ps/1:4.14-2/debian/patches/fix-format-security.diff + +Index: b/lib/psgen.c +=================================================================== +--- a/lib/psgen.c ++++ b/lib/psgen.c +@@ -232,7 +232,7 @@ + default: + *buf = '\0'; + ps_escape_char (job, cp[i], buf); +- output (jdiv, (char *) buf); ++ output (jdiv, "%s", (char *) buf); + break; + } + } +Index: b/lib/output.c +=================================================================== +--- a/lib/output.c ++++ b/lib/output.c +@@ -525,7 +525,7 @@ + expand_user_string (job, FIRST_FILE (job), + (const uchar *) "Expand: requirement", + (const uchar *) token)); +- output (dest, expansion); ++ output (dest, "%s", expansion); + continue; + } + +Index: b/lib/parseppd.y +=================================================================== +--- a/lib/parseppd.y ++++ b/lib/parseppd.y +@@ -154,7 +154,7 @@ + void + yyerror (const char *msg) + { +- error_at_line (1, 0, ppdfilename, ppdlineno, msg); ++ error_at_line (1, 0, ppdfilename, ppdlineno, "%s", msg); + } + + /* +Index: b/src/parsessh.y +=================================================================== +--- a/src/parsessh.y ++++ b/src/parsessh.y +@@ -740,7 +740,7 @@ + void + yyerror (const char *msg) + { +- error_at_line (1, 0, sshfilename, sshlineno, msg); ++ error_at_line (1, 0, sshfilename, sshlineno, "%s", msg); + } + + /* +Index: b/lib/parseppd.c +=================================================================== +--- a/lib/parseppd.c ++++ b/lib/parseppd.c +@@ -1707,7 +1707,7 @@ + void + yyerror (const char *msg) + { +- error_at_line (1, 0, ppdfilename, ppdlineno, msg); ++ error_at_line (1, 0, ppdfilename, ppdlineno, "%s", msg); + } + + /* +Index: b/src/parsessh.c +=================================================================== +--- a/src/parsessh.c ++++ b/src/parsessh.c +@@ -2639,7 +2639,7 @@ + void + yyerror (const char *msg) + { +- error_at_line (1, 0, sshfilename, sshlineno, msg); ++ error_at_line (1, 0, sshfilename, sshlineno, "%s", msg); + } + + /* diff --git a/gnu/packages/patches/clx-remove-demo.patch b/gnu/packages/patches/clx-remove-demo.patch deleted file mode 100644 index c5fffea0d0..0000000000 --- a/gnu/packages/patches/clx-remove-demo.patch +++ /dev/null @@ -1,27 +0,0 @@ ---- a/clx.asd 2016-02-16 00:06:48.161596976 -0500 -+++ b/clx.asd 2016-02-16 00:06:54.793774658 -0500 -@@ -79,24 +79,6 @@ - (:file "xtest") - (:file "screensaver") - (:file "xinerama"))) -- (:module demo -- :default-component-class example-source-file -- :components -- ((:file "bezier") -- ;; KLUDGE: this requires "bezier" for proper operation, -- ;; but we don't declare that dependency here, because -- ;; asdf doesn't load example files anyway. -- (:file "beziertest") -- (:file "clclock") -- (:file "clipboard") -- (:file "clx-demos") -- (:file "gl-test") -- ;; FIXME: compiling this generates 30-odd spurious code -- ;; deletion notes. Find out why, and either fix or -- ;; workaround the problem. -- (:file "mandel") -- (:file "menu") -- (:file "zoid"))) - (:module test - :default-component-class example-source-file - :components diff --git a/gnu/packages/patches/csvkit-fix-tests.patch b/gnu/packages/patches/csvkit-fix-tests.patch new file mode 100644 index 0000000000..cb9ec39cb0 --- /dev/null +++ b/gnu/packages/patches/csvkit-fix-tests.patch @@ -0,0 +1,45 @@ +diff --git a/tests/test_utilities/test_csvsql.py b/tests/test_utilities/test_csvsql.py +index e6ec4af..4f47980 100644 +--- a/tests/test_utilities/test_csvsql.py ++++ b/tests/test_utilities/test_csvsql.py +@@ -197,7 +197,7 @@ class TestCSVSQL(CSVKitTestCase, EmptyFileTests): + utility.run() + output = output_file.getvalue() + output_file.close() +- self.assertEqual(output, 'a,b,c\n1,2,3\n0,5,6\n') ++ self.assertEqual(output, 'a,b,c\n1,2.0,3.0\n0,5.0,6.0\n') + + def test_no_prefix_unique_constraint(self): + self.get_output(['--db', 'sqlite:///' + self.db_file, '--insert', 'examples/dummy.csv', '--unique-constraint', 'a']) +diff --git a/tests/test_utilities/test_sql2csv.py b/tests/test_utilities/test_sql2csv.py +index a0c3d3e..babcfd6 100644 +--- a/tests/test_utilities/test_sql2csv.py ++++ b/tests/test_utilities/test_sql2csv.py +@@ -121,23 +121,23 @@ class TestSQL2CSV(CSVKitTestCase, EmptyFileTests): + input_file.close() + + def test_unicode(self): +- expected = self.csvsql('examples/test_utf8.csv') ++ self.csvsql('examples/test_utf8.csv') + csv = self.get_output(['--db', 'sqlite:///' + self.db_file, '--query', 'select * from foo']) +- self.assertEqual(csv.strip(), expected) ++ self.assertEqual(csv.strip(), 'foo,bar,baz\n1.0,2.0,3\n4.0,5.0,ʤ') + + def test_no_header_row(self): + self.csvsql('examples/dummy.csv') + csv = self.get_output(['--db', 'sqlite:///' + self.db_file, '--no-header-row', '--query', 'select * from foo']) + + self.assertTrue('a,b,c' not in csv) +- self.assertTrue('1,2,3' in csv) ++ self.assertTrue('1,2.0,3.0' in csv) + + def test_linenumbers(self): + self.csvsql('examples/dummy.csv') + csv = self.get_output(['--db', 'sqlite:///' + self.db_file, '--linenumbers', '--query', 'select * from foo']) + + self.assertTrue('line_number,a,b,c' in csv) +- self.assertTrue('1,1,2,3' in csv) ++ self.assertTrue('1,1,2.0,3.0' in csv) + + def test_wildcard_on_sqlite(self): + self.csvsql('examples/iris.csv') diff --git a/gnu/packages/patches/cvs-2017-12836.patch b/gnu/packages/patches/cvs-CVE-2017-12836.patch index 507ab0f7d0..507ab0f7d0 100644 --- a/gnu/packages/patches/cvs-2017-12836.patch +++ b/gnu/packages/patches/cvs-CVE-2017-12836.patch diff --git a/gnu/packages/patches/expat-CVE-2018-20843.patch b/gnu/packages/patches/expat-CVE-2018-20843.patch new file mode 100644 index 0000000000..216fbe9667 --- /dev/null +++ b/gnu/packages/patches/expat-CVE-2018-20843.patch @@ -0,0 +1,21 @@ +Fix extraction of namespace prefix from XML name. +Fixes CVE-2018-20843 + +This patch comes from upstream commit 11f8838bf99ea0a6f0b76f9760c43704d00c4ff6 +https://github.com/libexpat/libexpat/commit/11f8838bf99ea0a6f0b76f9760c43704d00c4ff6 + +CVE is https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2018-20843 + +diff --git a/expat/lib/xmlparse.c b/expat/lib/xmlparse.c +index 30d55c5..737d7cd 100644 +--- a/lib/xmlparse.c ++++ b/lib/xmlparse.c +@@ -6071,7 +6071,7 @@ setElementTypePrefix(XML_Parser parser, ELEMENT_TYPE *elementType) + else + poolDiscard(&dtd->pool); + elementType->prefix = prefix; +- ++ break; + } + } + return 1; diff --git a/gnu/packages/patches/grub-binutils-compat.patch b/gnu/packages/patches/grub-binutils-compat.patch deleted file mode 100644 index 2107869314..0000000000 --- a/gnu/packages/patches/grub-binutils-compat.patch +++ /dev/null @@ -1,53 +0,0 @@ -Fix a relocation issue that shows up with recent binutils. - -Patch taken from upstream: -https://git.sv.gnu.org/cgit/grub.git/commit/?id=842c390469e2c2e10b5aa36700324cd3bde25875 - -diff --git a/grub-core/efiemu/i386/loadcore64.c b/grub-core/efiemu/i386/loadcore64.c -index e49d0b6..18facf4 100644 ---- a/grub-core/efiemu/i386/loadcore64.c -+++ b/grub-core/efiemu/i386/loadcore64.c -@@ -98,6 +98,7 @@ grub_arch_efiemu_relocate_symbols64 (grub_efiemu_segment_t segs, - break; - - case R_X86_64_PC32: -+ case R_X86_64_PLT32: - err = grub_efiemu_write_value (addr, - *addr32 + rel->r_addend - + sym.off -diff --git a/grub-core/kern/x86_64/dl.c b/grub-core/kern/x86_64/dl.c -index 4406906..3a73e6e 100644 ---- a/grub-core/kern/x86_64/dl.c -+++ b/grub-core/kern/x86_64/dl.c -@@ -70,6 +70,7 @@ grub_arch_dl_relocate_symbols (grub_dl_t mod, void *ehdr, - break; - - case R_X86_64_PC32: -+ case R_X86_64_PLT32: - { - grub_int64_t value; - value = ((grub_int32_t) *addr32) + rel->r_addend + sym->st_value - -diff --git a/util/grub-mkimagexx.c b/util/grub-mkimagexx.c -index a2bb054..39d7efb 100644 ---- a/util/grub-mkimagexx.c -+++ b/util/grub-mkimagexx.c -@@ -841,6 +841,7 @@ SUFFIX (relocate_addresses) (Elf_Ehdr *e, Elf_Shdr *sections, - break; - - case R_X86_64_PC32: -+ case R_X86_64_PLT32: - { - grub_uint32_t *t32 = (grub_uint32_t *) target; - *t32 = grub_host_to_target64 (grub_target_to_host32 (*t32) -diff --git a/util/grub-module-verifier.c b/util/grub-module-verifier.c -index 9179285..a79271f 100644 ---- a/util/grub-module-verifier.c -+++ b/util/grub-module-verifier.c -@@ -19,6 +19,7 @@ struct grub_module_verifier_arch archs[] = { - -1 - }, (int[]){ - R_X86_64_PC32, -+ R_X86_64_PLT32, - -1 - } - }, diff --git a/gnu/packages/patches/grub-check-error-efibootmgr.patch b/gnu/packages/patches/grub-check-error-efibootmgr.patch deleted file mode 100644 index efeb20f213..0000000000 --- a/gnu/packages/patches/grub-check-error-efibootmgr.patch +++ /dev/null @@ -1,197 +0,0 @@ -Without this patch, GRUB may proceed to wipe all firmware boot entries -and report a successful installation, even if efibootmgr hit an error. - -Origin URL: -https://git.sv.gnu.org/cgit/grub.git/commit/?id=6400613ad0b463abc93362086a491cd2a5e99b0d - -From 6400613ad0b463abc93362086a491cd2a5e99b0d Mon Sep 17 00:00:00 2001 -From: Steve McIntyre <steve@einval.com> -Date: Wed, 31 Jan 2018 21:49:36 +0000 -Subject: Make grub-install check for errors from efibootmgr - -Code is currently ignoring errors from efibootmgr, giving users -clearly bogus output like: - - Setting up grub-efi-amd64 (2.02~beta3-4) ... - Installing for x86_64-efi platform. - Could not delete variable: No space left on device - Could not prepare Boot variable: No space left on device - Installation finished. No error reported. - -and then potentially unbootable systems. If efibootmgr fails, grub-install -should know that and report it! - -We've been using similar patch in Debian now for some time, with no ill effects. - -diff --git a/grub-core/osdep/unix/platform.c b/grub-core/osdep/unix/platform.c -index a3fcfca..ca448bc 100644 ---- a/grub-core/osdep/unix/platform.c -+++ b/grub-core/osdep/unix/platform.c -@@ -78,19 +78,20 @@ get_ofpathname (const char *dev) - dev); - } - --static void -+static int - grub_install_remove_efi_entries_by_distributor (const char *efi_distributor) - { - int fd; - pid_t pid = grub_util_exec_pipe ((const char * []){ "efibootmgr", NULL }, &fd); - char *line = NULL; - size_t len = 0; -+ int rc; - - if (!pid) - { - grub_util_warn (_("Unable to open stream from %s: %s"), - "efibootmgr", strerror (errno)); -- return; -+ return errno; - } - - FILE *fp = fdopen (fd, "r"); -@@ -98,7 +99,7 @@ grub_install_remove_efi_entries_by_distributor (const char *efi_distributor) - { - grub_util_warn (_("Unable to open stream from %s: %s"), - "efibootmgr", strerror (errno)); -- return; -+ return errno; - } - - line = xmalloc (80); -@@ -119,23 +120,25 @@ grub_install_remove_efi_entries_by_distributor (const char *efi_distributor) - bootnum = line + sizeof ("Boot") - 1; - bootnum[4] = '\0'; - if (!verbosity) -- grub_util_exec ((const char * []){ "efibootmgr", "-q", -+ rc = grub_util_exec ((const char * []){ "efibootmgr", "-q", - "-b", bootnum, "-B", NULL }); - else -- grub_util_exec ((const char * []){ "efibootmgr", -+ rc = grub_util_exec ((const char * []){ "efibootmgr", - "-b", bootnum, "-B", NULL }); - } - - free (line); -+ return rc; - } - --void -+int - grub_install_register_efi (grub_device_t efidir_grub_dev, - const char *efifile_path, - const char *efi_distributor) - { - const char * efidir_disk; - int efidir_part; -+ int ret; - efidir_disk = grub_util_biosdisk_get_osdev (efidir_grub_dev->disk); - efidir_part = efidir_grub_dev->disk->partition ? efidir_grub_dev->disk->partition->number + 1 : 1; - -@@ -151,23 +154,26 @@ grub_install_register_efi (grub_device_t efidir_grub_dev, - grub_util_exec ((const char * []){ "modprobe", "-q", "efivars", NULL }); - #endif - /* Delete old entries from the same distributor. */ -- grub_install_remove_efi_entries_by_distributor (efi_distributor); -+ ret = grub_install_remove_efi_entries_by_distributor (efi_distributor); -+ if (ret) -+ return ret; - - char *efidir_part_str = xasprintf ("%d", efidir_part); - - if (!verbosity) -- grub_util_exec ((const char * []){ "efibootmgr", "-q", -+ ret = grub_util_exec ((const char * []){ "efibootmgr", "-q", - "-c", "-d", efidir_disk, - "-p", efidir_part_str, "-w", - "-L", efi_distributor, "-l", - efifile_path, NULL }); - else -- grub_util_exec ((const char * []){ "efibootmgr", -+ ret = grub_util_exec ((const char * []){ "efibootmgr", - "-c", "-d", efidir_disk, - "-p", efidir_part_str, "-w", - "-L", efi_distributor, "-l", - efifile_path, NULL }); - free (efidir_part_str); -+ return ret; - } - - void -diff --git a/include/grub/util/install.h b/include/grub/util/install.h -index 5910b0c..0dba8b6 100644 ---- a/include/grub/util/install.h -+++ b/include/grub/util/install.h -@@ -210,7 +210,7 @@ grub_install_create_envblk_file (const char *name); - const char * - grub_install_get_default_x86_platform (void); - --void -+int - grub_install_register_efi (grub_device_t efidir_grub_dev, - const char *efifile_path, - const char *efi_distributor); -diff --git a/util/grub-install.c b/util/grub-install.c -index 5e4cdfd..690f180 100644 ---- a/util/grub-install.c -+++ b/util/grub-install.c -@@ -1848,9 +1848,13 @@ main (int argc, char *argv[]) - if (!removable && update_nvram) - { - /* Try to make this image bootable using the EFI Boot Manager, if available. */ -- grub_install_register_efi (efidir_grub_dev, -- "\\System\\Library\\CoreServices", -- efi_distributor); -+ int ret; -+ ret = grub_install_register_efi (efidir_grub_dev, -+ "\\System\\Library\\CoreServices", -+ efi_distributor); -+ if (ret) -+ grub_util_error (_("efibootmgr failed to register the boot entry: %s"), -+ strerror (ret)); - } - - grub_device_close (ins_dev); -@@ -1871,6 +1875,7 @@ main (int argc, char *argv[]) - { - char * efifile_path; - char * part; -+ int ret; - - /* Try to make this image bootable using the EFI Boot Manager, if available. */ - if (!efi_distributor || efi_distributor[0] == '\0') -@@ -1887,7 +1892,10 @@ main (int argc, char *argv[]) - efidir_grub_dev->disk->name, - (part ? ",": ""), (part ? : "")); - grub_free (part); -- grub_install_register_efi (efidir_grub_dev, -- efifile_path, efi_distributor); -+ ret = grub_install_register_efi (efidir_grub_dev, -+ efifile_path, efi_distributor); -+ if (ret) -+ grub_util_error (_("efibootmgr failed to register the boot entry: %s"), -+ strerror (ret)); - } - break; - - -Below is a followup to the patch above: the uninitialized variable could lead -‘grub-install’ to error out when it shouldn’t (seen on an AArch64 box where -‘grub_install_remove_efi_entries_by_distributor’ didn't have any entry to -remove): - - grub-install: error: efibootmgr failed to register the boot entry: Unknown error 65535. - -See <http://lists.gnu.org/archive/html/bug-grub/2018-10/msg00006.html>. - ---- grub-2.02/grub-core/osdep/unix/platform.c 2018-10-17 22:21:53.015284846 +0200 -+++ grub-2.02/grub-core/osdep/unix/platform.c 2018-10-17 22:21:55.595271222 +0200 -@@ -85,7 +85,7 @@ grub_install_remove_efi_entries_by_distr - pid_t pid = grub_util_exec_pipe ((const char * []){ "efibootmgr", NULL }, &fd); - char *line = NULL; - size_t len = 0; -- int rc; -+ int rc = 0; - - if (!pid) - { diff --git a/gnu/packages/patches/grub-efi-fat-serial-number.patch b/gnu/packages/patches/grub-efi-fat-serial-number.patch index ad92f9bc9e..aec37d68e2 100644 --- a/gnu/packages/patches/grub-efi-fat-serial-number.patch +++ b/gnu/packages/patches/grub-efi-fat-serial-number.patch @@ -4,22 +4,23 @@ serial number (instead of the randomly chosen one) to create EFI images (the 'efi.img' file) that are reproducible bit-for-bit. Patch by Ludovic Courtès <ludo@gnu.org>. +Mangled (for GRUB 2.04) by Tobias Geerinckx-Rice <me@tobias.gr>. ---- grub-2.02/util/grub-mkrescue.c 2019-04-20 19:15:26.180242812 +0200 -+++ grub-2.02/util/grub-mkrescue.c 2019-04-20 21:56:34.672370849 +0200 -@@ -788,8 +788,15 @@ main (int argc, char *argv[]) +--- grub-2.04/util/grub-mkrescue.c 2019-05-20 13:01:11.000000000 +0200 ++++ grub-2.04/util/grub-mkrescue.c 2019-07-08 23:57:36.912104652 +0200 +@@ -809,8 +809,15 @@ + free (efidir_efi_boot); efiimgfat = grub_util_path_concat (2, iso9660_dir, "efi.img"); - int rv; - rv = grub_util_exec ((const char * []) { "mformat", "-C", "-f", "2880", "-L", "16", "-i", - efiimgfat, "::", NULL }); + + const char *fat_serial_number = getenv ("GRUB_FAT_SERIAL_NUMBER"); + const char *mformat_args[] = -+ { "mformat", "-C", "-f", "2880", "-L", "16", -+ fat_serial_number != NULL ? "-N" : "-C", -+ fat_serial_number != NULL ? fat_serial_number : "-C", -+ "-i", efiimgfat, "::", NULL }; ++ { "mformat", "-C", "-f", "2880", "-L", "16", ++ fat_serial_number != NULL ? "-N" : "-C", ++ fat_serial_number != NULL ? fat_serial_number : "-C", ++ "-i", efiimgfat, "::", NULL }; + + rv = grub_util_exec (mformat_args); if (rv != 0) diff --git a/gnu/packages/patches/libexif-CVE-2018-20030.patch b/gnu/packages/patches/libexif-CVE-2018-20030.patch new file mode 100644 index 0000000000..57e4746b58 --- /dev/null +++ b/gnu/packages/patches/libexif-CVE-2018-20030.patch @@ -0,0 +1,120 @@ +https://github.com/libexif/libexif/commit/6aa11df549114ebda520dde4cdaea2f9357b2c89.patch + +NEWS section was removed +'12' -> '30' on line 79 + +From 6aa11df549114ebda520dde4cdaea2f9357b2c89 Mon Sep 17 00:00:00 2001 +From: Dan Fandrich <dan@coneharvesters.com> +Date: Fri, 12 Oct 2018 16:01:45 +0200 +Subject: [PATCH] Improve deep recursion detection in + exif_data_load_data_content. + +The existing detection was still vulnerable to pathological cases +causing DoS by wasting CPU. The new algorithm takes the number of tags +into account to make it harder to abuse by cases using shallow recursion +but with a very large number of tags. This improves on commit 5d28011c +which wasn't sufficient to counter this kind of case. + +The limitation in the previous fix was discovered by Laurent Delosieres, +Secunia Research at Flexera (Secunia Advisory SA84652) and is assigned +the identifier CVE-2018-20030. +--- + NEWS | 1 + + libexif/exif-data.c | 45 +++++++++++++++++++++++++++++++++++++-------- + 2 files changed, 38 insertions(+), 8 deletions(-) + +diff --git a/libexif/exif-data.c b/libexif/exif-data.c +index e35403d..a6f9c94 100644 +--- a/libexif/exif-data.c ++++ b/libexif/exif-data.c +@@ -35,6 +35,7 @@ + #include <libexif/olympus/exif-mnote-data-olympus.h> + #include <libexif/pentax/exif-mnote-data-pentax.h> + ++#include <math.h> + #include <stdlib.h> + #include <stdio.h> + #include <string.h> +@@ -350,6 +351,20 @@ if (data->ifd[(i)]->count) { \ + break; \ + } + ++/*! Calculate the recursion cost added by one level of IFD loading. ++ * ++ * The work performed is related to the cost in the exponential relation ++ * work=1.1**cost ++ */ ++static unsigned int ++level_cost(unsigned int n) ++{ ++ static const double log_1_1 = 0.09531017980432493; ++ ++ /* Adding 0.1 protects against the case where n==1 */ ++ return ceil(log(n + 0.1)/log_1_1); ++} ++ + /*! Load data for an IFD. + * + * \param[in,out] data #ExifData +@@ -357,13 +372,13 @@ if (data->ifd[(i)]->count) { \ + * \param[in] d pointer to buffer containing raw IFD data + * \param[in] ds size of raw data in buffer at \c d + * \param[in] offset offset into buffer at \c d at which IFD starts +- * \param[in] recursion_depth number of times this function has been +- * recursively called without returning ++ * \param[in] recursion_cost factor indicating how expensive this recursive ++ * call could be + */ + static void + exif_data_load_data_content (ExifData *data, ExifIfd ifd, + const unsigned char *d, +- unsigned int ds, unsigned int offset, unsigned int recursion_depth) ++ unsigned int ds, unsigned int offset, unsigned int recursion_cost) + { + ExifLong o, thumbnail_offset = 0, thumbnail_length = 0; + ExifShort n; +@@ -378,9 +393,20 @@ exif_data_load_data_content (ExifData *data, ExifIfd ifd, + if ((((int)ifd) < 0) || ( ((int)ifd) >= EXIF_IFD_COUNT)) + return; + +- if (recursion_depth > 30) { ++ if (recursion_cost > 170) { ++ /* ++ * recursion_cost is a logarithmic-scale indicator of how expensive this ++ * recursive call might end up being. It is an indicator of the depth of ++ * recursion as well as the potential for worst-case future recursive ++ * calls. Since it's difficult to tell ahead of time how often recursion ++ * will occur, this assumes the worst by assuming every tag could end up ++ * causing recursion. ++ * The value of 170 was chosen to limit typical EXIF structures to a ++ * recursive depth of about 6, but pathological ones (those with very ++ * many tags) to only 2. ++ */ + exif_log (data->priv->log, EXIF_LOG_CODE_CORRUPT_DATA, "ExifData", +- "Deep recursion detected!"); ++ "Deep/expensive recursion detected!"); + return; + } + +@@ -422,15 +448,18 @@ exif_data_load_data_content (ExifData *data, ExifIfd ifd, + switch (tag) { + case EXIF_TAG_EXIF_IFD_POINTER: + CHECK_REC (EXIF_IFD_EXIF); +- exif_data_load_data_content (data, EXIF_IFD_EXIF, d, ds, o, recursion_depth + 1); ++ exif_data_load_data_content (data, EXIF_IFD_EXIF, d, ds, o, ++ recursion_cost + level_cost(n)); + break; + case EXIF_TAG_GPS_INFO_IFD_POINTER: + CHECK_REC (EXIF_IFD_GPS); +- exif_data_load_data_content (data, EXIF_IFD_GPS, d, ds, o, recursion_depth + 1); ++ exif_data_load_data_content (data, EXIF_IFD_GPS, d, ds, o, ++ recursion_cost + level_cost(n)); + break; + case EXIF_TAG_INTEROPERABILITY_IFD_POINTER: + CHECK_REC (EXIF_IFD_INTEROPERABILITY); +- exif_data_load_data_content (data, EXIF_IFD_INTEROPERABILITY, d, ds, o, recursion_depth + 1); ++ exif_data_load_data_content (data, EXIF_IFD_INTEROPERABILITY, d, ds, o, ++ recursion_cost + level_cost(n)); + break; + case EXIF_TAG_JPEG_INTERCHANGE_FORMAT: + thumbnail_offset = o; diff --git a/gnu/packages/patches/plib-CVE-2011-4620.patch b/gnu/packages/patches/plib-CVE-2011-4620.patch new file mode 100644 index 0000000000..c5a03bd0ca --- /dev/null +++ b/gnu/packages/patches/plib-CVE-2011-4620.patch @@ -0,0 +1,13 @@ +https://sources.debian.org/data/main/p/plib/1.8.5-8/debian/patches/04_CVE-2011-4620.diff + +--- a/src/util/ulError.cxx ++++ b/src/util/ulError.cxx +@@ -39,7 +39,7 @@ + { + va_list argp; + va_start ( argp, fmt ) ; +- vsprintf ( _ulErrorBuffer, fmt, argp ) ; ++ vsnprintf ( _ulErrorBuffer, sizeof(_ulErrorBuffer), fmt, argp ) ; + va_end ( argp ) ; + + if ( _ulErrorCB ) diff --git a/gnu/packages/patches/plib-CVE-2012-4552.patch b/gnu/packages/patches/plib-CVE-2012-4552.patch new file mode 100644 index 0000000000..7b697855d6 --- /dev/null +++ b/gnu/packages/patches/plib-CVE-2012-4552.patch @@ -0,0 +1,57 @@ +https://sources.debian.org/data/main/p/plib/1.8.5-8/debian/patches/05_CVE-2012-4552.diff + +diff -up plib-1.8.5/src/ssg/ssgParser.cxx~ plib-1.8.5/src/ssg/ssgParser.cxx +--- plib-1.8.5/src/ssg/ssgParser.cxx~ 2008-03-11 03:06:23.000000000 +0100 ++++ plib-1.8.5/src/ssg/ssgParser.cxx 2012-11-01 15:33:12.424483374 +0100 +@@ -57,18 +57,16 @@ void _ssgParser::error( const char *form + char msgbuff[ 255 ]; + va_list argp; + +- char* msgptr = msgbuff; +- if (linenum) +- { +- msgptr += sprintf ( msgptr,"%s, line %d: ", +- path, linenum ); +- } +- + va_start( argp, format ); +- vsprintf( msgptr, format, argp ); ++ vsnprintf( msgbuff, sizeof(msgbuff), format, argp ); + va_end( argp ); + +- ulSetError ( UL_WARNING, "%s", msgbuff ) ; ++ if (linenum) ++ { ++ ulSetError ( UL_WARNING, "%s, line %d: %s", path, linenum, msgbuff ) ; ++ } else { ++ ulSetError ( UL_WARNING, "%s", msgbuff ) ; ++ } + } + + +@@ -78,18 +76,16 @@ void _ssgParser::message( const char *fo + char msgbuff[ 255 ]; + va_list argp; + +- char* msgptr = msgbuff; +- if (linenum) +- { +- msgptr += sprintf ( msgptr,"%s, line %d: ", +- path, linenum ); +- } +- + va_start( argp, format ); +- vsprintf( msgptr, format, argp ); ++ vsnprintf( msgbuff, sizeof(msgbuff), format, argp ); + va_end( argp ); + +- ulSetError ( UL_DEBUG, "%s", msgbuff ) ; ++ if (linenum) ++ { ++ ulSetError ( UL_DEBUG, "%s, line %d: %s", path, linenum, msgbuff ) ; ++ } else { ++ ulSetError ( UL_DEBUG, "%s", msgbuff ) ; ++ } + } + + // Opens the file and does a few internal calculations based on the spec. diff --git a/gnu/packages/patches/python-slugify-depend-on-unidecode.patch b/gnu/packages/patches/python-slugify-depend-on-unidecode.patch new file mode 100644 index 0000000000..6038f432f1 --- /dev/null +++ b/gnu/packages/patches/python-slugify-depend-on-unidecode.patch @@ -0,0 +1,22 @@ +diff --git a/setup.py b/setup.py +index 4800173..6bdd77f 100755 +--- a/setup.py ++++ b/setup.py +@@ -14,8 +14,7 @@ url = 'https://github.com/un33k/python-slugify' + author = 'Val Neekman' + author_email = 'info@neekware.com' + license = 'MIT' +-install_requires = ['text-unidecode==1.2'] +-extras_require = {'unidecode': ['Unidecode==1.0.23']} ++install_requires = ['Unidecode'] + + classifiers = [ + 'Development Status :: 5 - Production/Stable', +@@ -67,7 +66,6 @@ setup( + author_email=author_email, + packages=find_packages(exclude=EXCLUDE_FROM_PACKAGES), + install_requires=install_requires, +- extras_require=extras_require, + classifiers=classifiers, + entry_points={'console_scripts': ['slugify=slugify.slugify:main']}, + ) diff --git a/gnu/packages/patchutils.scm b/gnu/packages/patchutils.scm index 687864c008..a63d889cff 100644 --- a/gnu/packages/patchutils.scm +++ b/gnu/packages/patchutils.scm @@ -307,7 +307,7 @@ you to figure out what is going on in that merge you keep avoiding.") (define-public patchwork (package (name "patchwork") - (version "2.1.2") + (version "2.1.4") (source (origin (method git-fetch) (uri (git-reference @@ -316,7 +316,7 @@ you to figure out what is going on in that merge you keep avoiding.") (file-name (git-file-name name version)) (sha256 (base32 - "06ng5pv6744w98zkyfm0ldkmpdgnsql3gbbbh6awq61sr2ndr3qw")))) + "0zi1hcqb0pi2diyznbv0c1631qk4rx02zl8ghyrr59g3ljlyr18y")))) (build-system python-build-system) (arguments `(;; TODO: Tests require a running database diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm index 1bf171ceaf..046c18c345 100644 --- a/gnu/packages/pdf.scm +++ b/gnu/packages/pdf.scm @@ -5,7 +5,7 @@ ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org> ;;; Copyright © 2016 Roel Janssen <roel@gnu.org> ;;; Copyright © 2016 ng0 <ng0@n0.is> -;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016, 2017 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016, 2017 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2016 Julien Lepiller <julien@lepiller.eu> @@ -604,7 +604,7 @@ extracting content or merging files.") (define-public mupdf (package (name "mupdf") - (version "1.14.0") + (version "1.15.0") (source (origin (method url-fetch) @@ -612,7 +612,7 @@ extracting content or merging files.") name "-" version "-source.tar.xz")) (sha256 (base32 - "1psnz02w5p7wc1s1ma7vvjmkjfy641xvsh9ykaqzkk84dflnjgk0")) + "0kmcz3ivxmqmks8vg50ri1zar18q5svk829z0g1kj08lgz7kcl2n")) (modules '((guix build utils))) (snippet ;; We keep lcms2 since it is different than our lcms. @@ -620,7 +620,7 @@ extracting content or merging files.") (for-each (lambda (dir) (delete-file-recursively (string-append "thirdparty/" dir))) - '("curl" "freeglut" "freetype" "harfbuzz" "jbig2dec" + '("freeglut" "freetype" "harfbuzz" "jbig2dec" "libjpeg" "mujs" "openjpeg" "zlib")) #t)))) (build-system gnu-build-system) diff --git a/gnu/packages/photo.scm b/gnu/packages/photo.scm index b2e3edca18..cbfc2debd8 100644 --- a/gnu/packages/photo.scm +++ b/gnu/packages/photo.scm @@ -1,8 +1,8 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2014, 2015, 2017 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2014, 2015, 2017, 2019 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2015 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2015, 2017 Andreas Enge <andreas@enge.fr> -;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2017 Roel Janssen <roel@gnu.org> ;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Leo Famulari <leo@famulari.name> @@ -70,14 +70,14 @@ (define-public libraw (package (name "libraw") - (version "0.19.2") + (version "0.19.3") (source (origin (method url-fetch) (uri (string-append "https://www.libraw.org/data/LibRaw-" version ".tar.gz")) (sha256 (base32 - "0i4nhjm5556xgn966x0i503ygk2wafq6z83kg0lisacjjab4f3a0")))) + "0xs1qb6pcvc4c43fy5xi3nkqxcif77gakkw99irf0fc5iccdd5px")))) (build-system gnu-build-system) (native-inputs `(("pkg-config" ,pkg-config))) @@ -117,7 +117,8 @@ cameras (CRW/CR2, NEF, RAF, DNG, and others).") (uri (string-append "mirror://sourceforge/libexif/libexif/" version "/libexif-" version ".tar.bz2")) (patches (search-patches "libexif-CVE-2016-6328.patch" - "libexif-CVE-2017-7544.patch")) + "libexif-CVE-2017-7544.patch" + "libexif-CVE-2018-20030.patch")) (sha256 (base32 "06nlsibr3ylfwp28w8f5466l6drgrnydgxrm4jmxzrmk5svaxk8n")))) @@ -445,7 +446,7 @@ and enhance them.") (inputs `(("boost" ,boost) ("enblend-enfuse" ,enblend-enfuse) - ("exiv2" ,exiv2) + ("exiv2" ,exiv2-0.26) ("fftw" ,fftw) ("flann" ,flann) ("freeglut" ,freeglut) diff --git a/gnu/packages/pretty-print.scm b/gnu/packages/pretty-print.scm index 405ad08ba4..7a5b98c698 100644 --- a/gnu/packages/pretty-print.scm +++ b/gnu/packages/pretty-print.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2019 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2017 Ludovic Courtès <ludo@gnu.org> @@ -63,7 +63,8 @@ #t)) (patches (search-patches "a2ps-CVE-2001-1593.patch" - "a2ps-CVE-2014-0466.patch")))) + "a2ps-CVE-2014-0466.patch" + "a2ps-CVE-2015-8107.patch")))) (build-system gnu-build-system) (inputs `(("psutils" ,psutils) diff --git a/gnu/packages/pulseaudio.scm b/gnu/packages/pulseaudio.scm index 5f8512716d..ff4049d707 100644 --- a/gnu/packages/pulseaudio.scm +++ b/gnu/packages/pulseaudio.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2018 Pierre Langlois <pierre.langlois@gmx.com> +;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -27,6 +28,7 @@ (define-module (gnu packages pulseaudio) #:use-module (guix packages) #:use-module (guix download) + #:use-module (guix git-download) #:use-module ((guix licenses) #:prefix l:) #:use-module (guix build-system gnu) #:use-module (guix build-system python) @@ -43,6 +45,10 @@ #:use-module (gnu packages web) #:use-module (gnu packages linux) #:use-module (gnu packages m4) + #:use-module (gnu packages protobuf) + #:use-module (gnu packages python) + #:use-module (gnu packages python-xyz) + #:use-module (gnu packages python-web) #:use-module (gnu packages pkg-config) #:use-module (gnu packages xiph)) @@ -301,3 +307,55 @@ sinks.") (description "Pulsemixer is a PulseAudio mixer with command-line and curses-style interfaces.") (license l:expat))) + +(define-public pulseaudio-dlna + ;; The last release was in 2016; use a more recent commit. + (let ((commit "4472928dd23f274193f14289f59daec411023ab0") + (revision "1")) + (package + (name "pulseaudio-dlna") + (version (git-version "0.5.2" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/masmu/pulseaudio-dlna.git") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1dfn7036vrq49kxv4an7rayypnm5dlawsf02pfsldw877hzdamqk")))) + (build-system python-build-system) + (arguments `(#:python ,python-2)) + (inputs + `(("python2-chardet" ,python2-chardet) + ("python2-dbus" ,python2-dbus) + ("python2-docopt" ,python2-docopt) + ("python2-futures" ,python2-futures) + ("python2-pygobject" ,python2-pygobject) + ("python2-lxml" ,python2-lxml) + ("python2-netifaces" ,python2-netifaces) + ("python2-notify2" ,python2-notify2) + ("python2-protobuf" ,python2-protobuf) + ("python2-psutil" ,python2-psutil) + ("python2-requests" ,python2-requests) + ("python2-pyroute2" ,python2-pyroute2) + ("python2-setproctitle" ,python2-setproctitle) + ("python2-zeroconf" ,python2-zeroconf))) + (home-page "https://github.com/masmu/pulseaudio-dlna") + (synopsis "Stream audio to DLNA/UPnP and Chromecast devices") + (description "This lightweight streaming server brings DLNA/UPnP and +Chromecast support to PulseAudio. It can stream your current PulseAudio +playback to different UPnP devices (UPnP Media Renderers, including Sonos +devices and some Smart TVs) or Chromecasts in your network. You should also +install one or more of the following packages alongside pulseaudio-dlna: + +@itemize +@item ffmpeg - transcoding support for multiple codecs +@item flac - FLAC transcoding support +@item lame - MP3 transcoding support +@item opus-tools - Opus transcoding support +@item sox - WAV transcoding support +@item vorbis-tools - Vorbis transcoding support +@end itemize") + (license l:gpl3+)))) diff --git a/gnu/packages/python-web.scm b/gnu/packages/python-web.scm index a16df55ef4..dbdc1834da 100644 --- a/gnu/packages/python-web.scm +++ b/gnu/packages/python-web.scm @@ -29,6 +29,7 @@ ;;; Copyright © 2018 Maxim Cournoyer <maxim.cournoyer@gmail.com> ;;; Copyright © 2019 Vagrant Cascadian <vagrant@debian.org> ;;; Copyright © 2019 Brendan Tildesley <mail@brendan.scot> +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -3165,3 +3166,33 @@ Python.") (propagated-inputs `(("python-gevent" ,python2-gevent) ("python-tornado" ,python2-tornado))))) + +(define-public python-slugify + (package + (name "python-slugify") + (version "3.0.2") + (source + (origin + (method url-fetch) + (uri (pypi-uri "python-slugify" version)) + (sha256 + (base32 + "0n6pfmsq899c54plpvzi46l7zrpa3zfpm8im6h32czjw6kxky5jp")) + (patches + (search-patches "python-slugify-depend-on-unidecode.patch")))) + (native-inputs + `(("python-wheel" ,python-wheel))) + (propagated-inputs + `(("python-unidecode" ,python-unidecode))) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "python" "test.py")))))) + (build-system python-build-system) + (home-page "https://github.com/un33k/python-slugify") + (synopsis "Python Slugify application that handles Unicode") + (description "This package provides a @command{slufigy} command and +library to create slugs from unicode strings while keeping it DRY.") + (license license:expat))) diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm index 952f2436fd..ac1c66a1d9 100644 --- a/gnu/packages/python-xyz.scm +++ b/gnu/packages/python-xyz.scm @@ -61,6 +61,8 @@ ;;; Copyright © 2019 Sam <smbaines8@gmail.com> ;;; Copyright © 2019 Jack Hill <jackhill@jackhill.us> ;;; Copyright © 2019 Guillaume Le Vaillant <glv@posteo.net> +;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -667,14 +669,14 @@ other machines, such as over the network.") (define-public python-setuptools (package (name "python-setuptools") - (version "40.8.0") + (version "41.0.1") (source (origin (method url-fetch) (uri (pypi-uri "setuptools" version ".zip")) (sha256 (base32 - "0k9hifpgahnw2a26w3cr346iy733k6d3nwh3f7g9m13y6f8fqkkf")) + "04sns22y2hhsrwfy1mha2lgslvpjsjsz8xws7h2rh5a7ylkd28m2")) (modules '((guix build utils))) (snippet '(begin @@ -4338,19 +4340,18 @@ services for your Python modules and applications.") (define-public python-olefile (package (name "python-olefile") - (version "0.45.1") + (version "0.46") (source (origin (method url-fetch) - (uri (string-append "https://github.com/decalage2/olefile/archive/v" - version ".tar.gz")) + (uri (string-append "https://github.com/decalage2/olefile/releases/" + "download/v" version "/olefile-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "18ai19zwagm6nli14k8bii31ipbab2rp7plrvsm6gmfql551a8ai")))) + "1kjxh4gr651hpqkjfv89cfzr40hyvf3vjlda7mifiail83j7j07m")))) (build-system python-build-system) - (home-page - "https://www.decalage.info/python/olefileio") + (home-page "https://www.decalage.info/python/olefileio") (synopsis "Read and write Microsoft OLE2 files.") (description "@code{olefile} can parse, read and write Microsoft OLE2 files (Structured @@ -5639,6 +5640,33 @@ implementation of D-Bus.") ;; "ValueError: unichr() arg not in range(0x10000) (narrow Python build)" (arguments `(#:tests? #f)))) +(define-public python-notify2 + (package + (name "python-notify2") + (version "0.3.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "notify2" version)) + (sha256 + (base32 + "0z8rrv9rsg1r2qgh2dxj3dfj5xnki98kgi3w839kqby4a26i1yik")))) + (build-system python-build-system) + (arguments `(#:tests? #f)) ; tests depend on system state + (native-inputs + `(("python-dbus" ,python-dbus))) + (home-page "https://bitbucket.org/takluyver/pynotify2") + (synopsis "Python interface to D-Bus notifications") + (description + "Pynotify2 provides a Python interface for sending D-Bus notifications. +It is a reimplementation of pynotify in pure Python, and an alternative to +the GObject Introspection bindings to libnotify for non-GTK applications.") + (license (list license:bsd-2 + license:lgpl2.1+)))) + +(define-public python2-notify2 + (package-with-python2 python-notify2)) + (define-public python-lxml (package (name "python-lxml") @@ -5713,14 +5741,14 @@ converts incoming documents to Unicode and outgoing documents to UTF-8.") (define-public python-soupsieve (package (name "python-soupsieve") - (version "1.9.1") + (version "1.9.2") (source (origin (method url-fetch) (uri (pypi-uri "soupsieve" version)) (sha256 (base32 - "1jnzkiwmjl6yvqckc9mf689g87b6yz07sv868hap2aa5arggy3mj")))) + "0in9rc9q3h8w5b4qf7kvl3qxcvw6vrz35ckblchgf70hm6pg3dbj")))) (build-system python-build-system) (arguments `(#:tests? #f)) ;;XXX: 2 tests fail currently despite claming they were to be @@ -6874,6 +6902,41 @@ and MAC network addresses.") (define-public python2-netaddr (package-with-python2 python-netaddr)) +(define-public python2-pyroute2 + (package + (name "python2-pyroute2") + (version "0.5.6") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pyroute2" version)) + (sha256 + (base32 + "1gmz4r1w0yzj6fjjypnalmfyy0lnfznydyn62gi3wk50j5hhxbny")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2)) ;Python 3.x is not supported + (home-page "https://github.com/svinota/pyroute2") + (synopsis "Python netlink library") + (description + "Pyroute2 is a pure Python netlink library with minimal dependencies. +Supported netlink families and protocols include: +@itemize +@item rtnl, network settings - addresses, routes, traffic controls +@item nfnetlink - netfilter API: ipset, nftables, ... +@item ipq - simplest userspace packet filtering, iptables QUEUE target +@item devlink - manage and monitor devlink-enabled hardware +@item generic - generic netlink families + @itemize + @item nl80211 - wireless functions API (basic support) + @item taskstats - extended process statistics + @item acpi_events - ACPI events monitoring + @item thermal_events - thermal events monitoring + @item VFS_DQUOT - disk quota events monitoring + @end itemize +@end itemize") + (license license:gpl2+))) + (define-public python-wrapt (package (name "python-wrapt") @@ -15760,6 +15823,42 @@ by Igor Pavlov.") (define-public python2-pylzma (package-with-python2 python-pylzma)) +(define-public python2-zeroconf + (package + (name "python2-zeroconf") + + ;; This is the last version that supports Python 2.x. + (version "0.19.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "zeroconf" version)) + (sha256 + (base32 + "0ykzg730n915qbrq9bn5pn06bv6rb5zawal4sqjyfnjjm66snkj3")))) + (build-system python-build-system) + (arguments + `(#:python ,python-2 + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'patch-requires + (lambda* (#:key inputs #:allow-other-keys) + (substitute* "setup.py" + (("enum-compat") + "enum34")) + #t))))) + (native-inputs + `(("python2-six" ,python2-six) + ("python2-enum32" ,python2-enum34) + ("python2-netifaces" ,python2-netifaces) + ("python2-typing" ,python2-typing))) + (home-page "https://github.com/jstasiak/python-zeroconf") + (synopsis "Pure Python mDNS service discovery") + (description + "Pure Python multicast DNS (mDNS) service discovery library (Bonjour/Avahi +compatible).") + (license license:lgpl2.1+))) + (define-public python-bsddb3 (package (name "python-bsddb3") @@ -15796,3 +15895,24 @@ hash, recno, and queue. Complete support of Berkeley DB distributed transactions. Complete support for Berkeley DB Replication Manager. Complete support for Berkeley DB Base Replication. Support for RPC.") (license license:bsd-3))) + +(define-public python-dbfread + (package + (name "python-dbfread") + (version "2.0.7") + (source (origin + (method url-fetch) + (uri (pypi-uri "dbfread" version)) + (sha256 + (base32 + "0gdpwdzf1fngsi6jrdyj4qdf6cr7gnnr3zp80dpkzbgz0spskj07")))) + (build-system python-build-system) + (native-inputs + `(("python-pytest" ,python-pytest))) + (home-page "https://dbfread.readthedocs.io") + (synopsis "Read DBF Files with Python") + (description + "This library reads DBF files and returns the data as native Python data +types for further processing. It is primarily intended for batch jobs and +one-off scripts.") + (license license:expat))) diff --git a/gnu/packages/serialization.scm b/gnu/packages/serialization.scm index ae1ef9749b..505c196abd 100644 --- a/gnu/packages/serialization.scm +++ b/gnu/packages/serialization.scm @@ -297,18 +297,16 @@ that implements both the msgpack and msgpack-rpc specifications.") (define-public jsoncpp (package (name "jsoncpp") - (version "1.8.4") + (version "1.9.0") + (home-page "https://github.com/open-source-parsers/jsoncpp") (source (origin - (method url-fetch) - (uri (string-append - "https://github.com/open-source-parsers/jsoncpp/archive/" - version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference (url home-page) (commit version))) + (file-name (git-file-name name version)) (sha256 (base32 - "1dpxk8hkni5dq4mdw8qbaj40jmid3a31d1gh8iqcnfwkw34ym7f4")))) + "10wnwlq92gp32f5p55kjcc12jfsl0yq6f2y4abb0si6wym12krw9")))) (build-system cmake-build-system) - (home-page "https://github.com/open-source-parsers/jsoncpp") (arguments `(#:configure-flags '("-DBUILD_SHARED_LIBS:BOOL=YES"))) (synopsis "C++ library for interacting with JSON") diff --git a/gnu/packages/time.scm b/gnu/packages/time.scm index 65f42cc1f0..c75ed6f2cd 100644 --- a/gnu/packages/time.scm +++ b/gnu/packages/time.scm @@ -15,6 +15,7 @@ ;;; Copyright © 2017 Julien Lepiller <julien@lepiller.eu> ;;; Copyright © 2018 Alex Vong <alexvong1995@gmail.com> ;;; Copyright © 2019 Kyle Meyer <kyle@kyleam.com> +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -65,6 +66,26 @@ program uses. The display output of the program can be customized or saved to a file.") (license gpl3+))) +(define-public python-pytimeparse + (package + (name "python-pytimeparse") + (version "1.1.8") + (source + (origin + (method url-fetch) + (uri (pypi-uri "pytimeparse" version)) + (sha256 + (base32 + "02kaambsgpjx3zi42j6l11rwms2p35b9hsk4f3kdf979gd3kcqg8")))) + (native-inputs + `(("python-nose" ,python-nose))) + (build-system python-build-system) + (home-page "https://github.com/wroberts/pytimeparse") + (synopsis "Time expression parser") + (description "This small Python module parses various kinds of time +expressions.") + (license expat))) + (define-public python-pytzdata (package (name "python-pytzdata") diff --git a/gnu/packages/version-control.scm b/gnu/packages/version-control.scm index 0ec68a147f..a1a1f2d09a 100644 --- a/gnu/packages/version-control.scm +++ b/gnu/packages/version-control.scm @@ -1418,7 +1418,7 @@ machine.") (uri (string-append "https://ftp.gnu.org/non-gnu/cvs/source/feature/" version "/cvs-" version ".tar.bz2")) - (patches (search-patches "cvs-2017-12836.patch")) + (patches (search-patches "cvs-CVE-2017-12836.patch")) (sha256 (base32 "0pjir8cwn0087mxszzbsi1gyfc6373vif96cw4q3m1x6p49kd1bq")))) diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm index 7f2db9980e..e06edd5be9 100644 --- a/gnu/packages/vim.scm +++ b/gnu/packages/vim.scm @@ -565,21 +565,21 @@ and powerline symbols, etc.") ;; There are no tarball releases. (define-public vim-airline-themes - (let ((commit "6026eb78bf362cb3aa875aff8487f65728d0f7d8") - (revision "1")) + (let ((commit "e6f233231b232b6027cde6aebeeb18d9138e5324") + (revision "2")) (package (name "vim-airline-themes") - (version (string-append "0.0.0-" revision "." (string-take commit 7))) + (version (git-version "0.0.0" revision commit)) (source (origin (method git-fetch) (uri (git-reference (url "https://github.com/vim-airline/vim-airline-themes") (commit commit))) - (file-name (string-append name "-" version "-checkout")) + (file-name (git-file-name name version)) (sha256 (base32 - "13ijkavh1r0935cn2rjsfbdd1q3ka8bi26kw0bdkrqlrqxwvpss8")))) + "1sb7nb7j7bz0pv1c9bgdy0smhr0jk2b1vbdv9yzghg5lrknpsbr6")))) (build-system gnu-build-system) (arguments `(#:tests? #f diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm index 687c92e2a6..f70e6840af 100644 --- a/gnu/packages/web.scm +++ b/gnu/packages/web.scm @@ -33,6 +33,7 @@ ;;; Copyright © 2019 Nicolas Goaziou <mail@nicolasgoaziou.fr> ;;; Copyright © 2019 Brendan Tildesley <mail@brendan.scot> ;;; Copyright © 2019 Alex Griffin <a@ajgrf.com> +;;; Copyright © 2019 Hartmut Goebel <h.goebel@crazy-compilers.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2520,15 +2521,14 @@ composed of HTML::Element style components.") (define-public perl-html-form (package (name "perl-html-form") - (version "6.03") + (version "6.04") (source (origin (method url-fetch) - (uri (string-append "mirror://cpan/authors/id/G/GA/GAAS/" + (uri (string-append "mirror://cpan/authors/id/O/OA/OALDERS/" "HTML-Form-" version ".tar.gz")) (sha256 - (base32 - "0dpwr7yz6hjc3bcqgcbdzjjk9l58ycdjmbam9nfcmm85y2a1vh38")))) + (base32 "100090bdsr5kapv8h0wxzwlzfbfqn57rq9gzrvg9i6hvnsl5gmcw")))) (build-system perl-build-system) (propagated-inputs `(("perl-html-parser" ,perl-html-parser) @@ -5241,16 +5241,28 @@ command-line arguments or read from stdin.") (define-public python-internetarchive (package (name "python-internetarchive") - (version "1.7.4") + (version "1.8.5") (source (origin - (method url-fetch) - (uri (string-append "https://github.com/jjjake/internetarchive/archive/" - "v" version ".tar.gz")) - (file-name (string-append name "-" version ".tar.gz")) + (method git-fetch) + (uri (git-reference + (url "https://github.com/jjjake/internetarchive") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) (sha256 (base32 - "0sdbb2ag6vmybi8zmbjszi492a587giaaqxyy1p6gy03cb8mc512")))) + "0ih7hplv92wbv6cmgc1gs0v35qkajwicalwcq8vcljw30plr24fp")) + (modules '((guix build utils))) + (snippet + '(begin + ;; Python 3.7 removed `_pattern_type'. + (for-each (lambda (file) + (chmod file #o644) + (substitute* file + (("^import re\n" line) + (string-append line "re._pattern_type = re.Pattern\n")))) + (find-files "." "\\.py$")) + #t)))) (build-system python-build-system) (arguments `(#:phases @@ -6497,3 +6509,30 @@ update an existing mirrored site, and resume interrupted downloads. HTTrack is fully configurable, and has an integrated help system.") (license license:gpl3+))) + +(define-public anonip + (package + (name "anonip") + (version "1.0.0") + (source (origin + (method url-fetch) + (uri (pypi-uri "anonip" version)) + (sha256 + (base32 + "0ckn9nnfhpdnz8b92q8pkysdqj6pdh71ckfqvfj0z01cq0hzbhd2")))) + (build-system python-build-system) + (home-page "https://github.com/DigitaleGesellschaft/Anonip") + (synopsis "Anonymize IP addresses in log files") + (description + "Anonip masks the last bits of IPv4 and IPv6 addresses in log files. +That way most of the relevant information is preserved, while the IP address +does not match a particular individuum anymore. + +Depending on your Web server, the log entries may be piped to Anonip directly +or via a FIFO (named pipe). Thus the unmasked IP addresses will never be +written to any file. + +It's also possible to rewrite existing log files. + +Anonip can also be uses as a Python module in your own Python application.") + (license license:bsd-3))) diff --git a/gnu/packages/wget.scm b/gnu/packages/wget.scm index 7261137cab..76ceed5ff7 100644 --- a/gnu/packages/wget.scm +++ b/gnu/packages/wget.scm @@ -79,7 +79,7 @@ in downloaded documents to relative links.") (define-public wgetpaste (package (name "wgetpaste") - (version "2.28") + (version "2.29") (source (origin (method url-fetch) @@ -87,10 +87,10 @@ in downloaded documents to relative links.") version ".tar.bz2")) (sha256 (base32 - "1hh9svyypqcvdg5mjxyyfzpdzhylhf7s7xq5dzglnm4injx3i3ak")))) + "1rp0wxr3zy7y2xp3azaadfghrx7g0m138f9qg6icjxkkz4vj9r22")))) (build-system gnu-build-system) (arguments - '(#:modules ((guix build gnu-build-system) + `(#:modules ((guix build gnu-build-system) (guix build utils) (srfi srfi-1)) #:phases @@ -102,16 +102,17 @@ in downloaded documents to relative links.") ;; https://gitweb.gentoo.org/repo/gentoo.git/tree/app-text/wgetpaste/files/wgetpaste-remove-dead.patch (lambda _ (substitute* "wgetpaste" - ((" poundpython\"") "\"") - (("-poundpython") "-bpaste")) ; dpaste blocks tor users + (("-bpaste") "-dpaste")) ; dpaste blocks tor users #t)) (replace 'install (lambda* (#:key outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) (bin (string-append out "/bin")) - (zsh (string-append out "/share/zsh/site-functions"))) + (zsh (string-append out "/share/zsh/site-functions")) + (doc (string-append out "/share/doc/" ,name "-" ,version))) (install-file "wgetpaste" bin) (install-file "_wgetpaste" zsh) + (install-file "LICENSE" doc) #t))) (add-after 'install 'wrap-program ;; /bin/wgetpaste prides itself on relying only on the following diff --git a/gnu/packages/wine.scm b/gnu/packages/wine.scm index 72f0e1fd55..62cf225ceb 100644 --- a/gnu/packages/wine.scm +++ b/gnu/packages/wine.scm @@ -310,7 +310,7 @@ integrate Windows applications into your desktop.") (define-public wine-staging-patchset-data (package (name "wine-staging-patchset-data") - (version "4.11") + (version "4.12.1") (source (origin (method git-fetch) @@ -320,7 +320,7 @@ integrate Windows applications into your desktop.") (file-name (git-file-name name version)) (sha256 (base32 - "0h8qldqr9w1kwn48qgg5m1cs2xqkv8xxg2c66cvfka91hy886jcf")))) + "1bvpvj6vcw2p6vcjm6mw5maarbs4lfw1ix3pj020w4n3kg4nmmc4")))) (build-system trivial-build-system) (native-inputs `(("bash" ,bash) @@ -366,7 +366,7 @@ integrate Windows applications into your desktop.") (file-name (string-append name "-" version ".tar.xz")) (sha256 (base32 - "1rmyfwlynzs2niz7l2lwjs2axm6in6gb43ldbzyzsflxsmk5fl9f")))) + "09yjfb2k14y11k19lm8dqmb8qwxyhh67d5q1gqv480y64mljvkx0")))) (inputs `(("autoconf" ,autoconf) ; for autoreconf ("faudio" ,faudio) ("ffmpeg" ,ffmpeg) diff --git a/gnu/packages/wireservice.scm b/gnu/packages/wireservice.scm new file mode 100644 index 0000000000..362b69575f --- /dev/null +++ b/gnu/packages/wireservice.scm @@ -0,0 +1,267 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2019 Pierre Langlois <pierre.langlois@gmx.com> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages wireservice) + #:use-module ((guix licenses) #:prefix license:) + #:use-module (guix build-system python) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix packages) + #:use-module (gnu packages) + #:use-module (gnu packages check) + #:use-module (gnu packages databases) + #:use-module (gnu packages python-web) + #:use-module (gnu packages python-xyz) + #:use-module (gnu packages sphinx) + #:use-module (gnu packages time)) + +;; Common package definition for packages from https://github.com/wireservice. +(define-syntax-rule (wireservice-package extra-fields ...) + (package + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "nosetests" "tests"))) + (add-after 'install 'install-docs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (doc (string-append out "/share/doc/" + ,(package-name this-package) + "-" + ,(package-version this-package)))) + (with-directory-excursion "docs" + (for-each + (lambda (target) + (invoke "make" target) + (copy-recursively (string-append "_build/" target) + (string-append doc "/" target))) + '("html" "dirhtml" "singlehtml" "text"))) + #t)))))) + (license license:expat) + extra-fields ...)) + +(define-public python-leather + (wireservice-package + (name "python-leather") + (version "0.3.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wireservice/leather.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1ck3dplni99sv4s117cbm07ydwwjsrxkhdy19rnk0iglia1d4s5i")))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) + ("python-csselect" ,python-cssselect) + ("python-lxml" ,python-lxml))) + (propagated-inputs + `(("python-six" ,python-six))) + (home-page "https://leather.rtfd.org") + (synopsis "Python charting for 80% of humans") + (description "Leather is a Python charting library for those who need +charts now and don't care if they're perfect."))) + +(define-public python-agate + (wireservice-package + (name "python-agate") + (version "1.6.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wireservice/agate.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "077zj8xad8hsa3nqywvf7ircirmx3krxdipl8wr3dynv3l3khcpl")))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme) + ("python-csselect" ,python-cssselect) + ("python-lxml" ,python-lxml))) + (propagated-inputs + `(("python-babel" ,python-babel) + ("python-isodate" ,python-isodate) + ("python-leather" ,python-leather) + ("python-parsedatetime" ,python-parsedatetime) + ("python-pytimeparse" ,python-pytimeparse) + ("python-six" ,python-six) + ("python-slugify" ,python-slugify))) + (home-page "https://agate.rtfd.org") + (synopsis "Data analysis library") + (description "Agate is a Python data analysis library. It is an +alternative to numpy and pandas that solves real-world problems with readable +code. Agate was previously known as journalism."))) + +(define-public python-agate-sql + (wireservice-package + (name "python-agate-sql") + (version "0.5.4") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wireservice/agate-sql.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "16q0b211n5b1qmhzkfl2jr56lda0rvyh5j1wzw26h2n4pm4wxlx2")))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme))) + (propagated-inputs + `(("python-agate" ,python-agate) + ("python-crate" ,python-crate) + ("python-sqlalchemy" ,python-sqlalchemy))) + (home-page "https://agate-sql.rtfd.org") + (synopsis "SQL read/write support to agate") + (description "@code{agatesql} uses a monkey patching pattern to add SQL +support to all @code{agate.Table} instances."))) + +(define-public python-agate-dbf + (wireservice-package + (name "python-agate-dbf") + (version "0.2.1") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wireservice/agate-dbf.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1y49fi6pmm7gzhajvqmfpcca2sqnwj24fqnsvzwk7r1hg2iaa2gi")))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme))) + (propagated-inputs + `(("python-agate" ,python-agate) + ("python-dbfread" ,python-dbfread))) + (home-page "https://agate-dbf.rtfd.org") + (synopsis "Add read support for dbf files to agate") + (description "@code{agatedbf} uses a monkey patching pattern to add read +for dbf files support to all @code{agate.Table} instances."))) + +(define-public python-agate-excel + (wireservice-package + (name "python-agate-excel") + (version "0.2.3") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/wireservice/agate-excel.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1k5lv21k19s7kgbj5srd1xgrkqvxqqs49qwj33zncs9l7851afy7")))) + (native-inputs + `(("python-nose" ,python-nose) + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme))) + (propagated-inputs + `(("python-agate" ,python-agate) + ("python-openpyxl" ,python-openpyxl) + ("python-xlrd" ,python-xlrd))) + (home-page "https://agate-excel.rtfd.org") + (synopsis "Add read support for Excel files (xls and xlsx) to agate") + (description "@code{agateexcel} uses a monkey patching pattern to add read +for xls and xlsx files support to all @code{agate.Table} instances."))) + +(define-public csvkit + (package + (name "csvkit") + (version "1.0.4") + (source (origin + (method url-fetch) + (uri (pypi-uri "csvkit" version)) + (sha256 + (base32 + "1830lb95rh1iyi3drlwxzb6y3pqkii0qiyzd40c1kvhvaf1s6lqk")) + (patches (search-patches "csvkit-fix-tests.patch")))) + (build-system python-build-system) + (native-inputs + `(("python-psycopg2" ,python-psycopg2) ;; Used to test PostgreSQL support. + ("python-sphinx" ,python-sphinx) + ("python-sphinx-rtd-theme" ,python-sphinx-rtd-theme))) + (inputs + `(("python-agate-dbf" ,python-agate-dbf) + ("python-agate-excel" ,python-agate-excel) + ("python-agate-sql" ,python-agate-sql) + ("python-six" ,python-six))) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'install 'install-docs + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (man1 (string-append out "/share/man/man1"))) + (with-directory-excursion "docs" + (invoke "make" "man") + (copy-recursively "_build/man" man1)) + #t)))))) + (home-page "https://csvkit.rtfd.org") + (synopsis "Command-line tools for working with CSV") + (description "csvkit is a suite of command-line tools for converting to +and working with CSV. It provides the following commands: +@itemize +@item Input: + @itemize + @item @command{in2csv}: Convert various formats to CSV. + @item @command{sql2csv}: Execute SQL commands on a database and return the +data as CSV. + @end itemize +@item Processing: + @itemize + @item @command{csvclean}: Remove common syntax errors. + @item @command{csvcut}: Filter and truncate CSV files. + @item @command{csvgrep}: Filter tabular data to only those rows where +certain columns contain a given value or match a regular expression. + @item @command{csvjoin}: Merges two or more CSV tables together using a +method analogous to SQL JOIN operation. + @item @command{csvsort}: Sort CSV files. + @item @command{csvstack}: Stack up the rows from multiple CSV files, +optionally adding a grouping value to each row. + @end itemize +@item Output and analysis: + @itemize + @item @command{csvformat}: Convert a CSV file to a custom output format. + @item @command{csvjson}: Converts a CSV file into JSON or GeoJSON. + @item @command{csvlook}: Renders a CSV to the command line in a +Markdown-compatible, fixed-width format. + @item @command{csvpy}: Loads a CSV file into a @code{agate.csv.Reader} +object and then drops into a Python shell so the user can inspect the data +however they see fit. + @item @command{csvsql}: Generate SQL statements for a CSV file or execute +those statements directly on a database. + @item @command{csvstat}: Prints descriptive statistics for all columns in a +CSV file. + @end itemize +@end itemize") + (license license:expat))) diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm index d2bddef54d..1dbbfb7e77 100644 --- a/gnu/packages/wm.scm +++ b/gnu/packages/wm.scm @@ -268,8 +268,8 @@ Despite the name it should work with any X11 window manager.") (license license:bsd-3))) (define-public i3blocks - (let ((commit "37f23805ff886639163fbef8aedba71c8071eff8") - (revision "1")) + (let ((commit "ec050e79ad8489a6f8deb37d4c20ab10729c25c3") + (revision "2")) (package (name "i3blocks") (version (string-append "1.4-" revision "." @@ -281,7 +281,7 @@ Despite the name it should work with any X11 window manager.") (commit commit))) (sha256 (base32 - "15rnrcajzyrmhlz1a21qqsjlj3dkib70806dlb386fliylc2kisb")) + "1fx4230lmqa5rpzph68dwnpcjfaaqv5gfkradcr85hd1z8d1qp1b")) (file-name (git-file-name name version)))) (build-system gnu-build-system) (arguments diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm index 35fa478c2d..b2df24b52a 100644 --- a/gnu/packages/xdisorg.scm +++ b/gnu/packages/xdisorg.scm @@ -1062,7 +1062,7 @@ color temperature should be set to match the lamps in your room.") (define-public xscreensaver (package (name "xscreensaver") - (version "5.42") + (version "5.43") (source (origin (method url-fetch) @@ -1070,11 +1070,10 @@ color temperature should be set to match the lamps in your room.") (string-append "https://www.jwz.org/xscreensaver/xscreensaver-" version ".tar.gz")) (sha256 - (base32 - "1qfbsnj7201d03vf0b2lzxmlcq4kvkvzp48r5gcgsjr17c1sl7a4")))) + (base32 "1571pj1a9998sq14y9366s2rw9wd2kq3l3dvvsk610vyd0fki3qm")))) (build-system gnu-build-system) (arguments - `(#:tests? #f ; no check target + `(#:tests? #f ; no check target #:phases (modify-phases %standard-phases (add-before 'configure 'adjust-gtk-resource-paths @@ -1085,9 +1084,7 @@ color temperature should be set to match the lamps in your room.") #t))) #:configure-flags '("--with-pam" "--with-proc-interrupts" "--without-readdisplay") - ;; FIXME: Remove CFLAGS once our default compiler is GCC6 or later. - #:make-flags (list "CFLAGS=-std=c99" - (string-append "AD_DIR=" + #:make-flags (list (string-append "AD_DIR=" (assoc-ref %outputs "out") "/usr/lib/X11/app-defaults")))) (native-inputs diff --git a/gnu/packages/xml.scm b/gnu/packages/xml.scm index 8dce027827..e708348006 100644 --- a/gnu/packages/xml.scm +++ b/gnu/packages/xml.scm @@ -20,6 +20,7 @@ ;;; Copyright © 2017 Petter <petter@mykolab.ch> ;;; Copyright © 2017 Stefan Reichör <stefan@xsteve.at> ;;; Copyright © 2018 Pierre Neidhardt <mail@ambrevar.xyz> +;;; Copyright © 2018 Jack Hill <jackhill@jackhill.us> ;;; ;;; This file is part of GNU Guix. ;;; @@ -66,13 +67,18 @@ (package (name "expat") (version "2.2.7") - (source (origin - (method url-fetch) - (uri (string-append "mirror://sourceforge/expat/expat/" - version "/expat-" version ".tar.xz")) - (sha256 - (base32 - "1y5yax6bq8p9xk49zqkd62pxk8bq266wrgbrqgaxp3wsrw5g9qrh")))) + (source (let ((dot->underscore (lambda (c) (if (char=? #\. c) #\_ c)))) + (origin + (method url-fetch) + (uri (list (string-append "mirror://sourceforge/expat/expat/" + version "/expat-" version ".tar.xz") + (string-append + "https://github.com/libexpat/libexpat/releases/download/R_" + (string-map dot->underscore version) + "/expat-" version ".tar.xz"))) + (sha256 + (base32 + "1y5yax6bq8p9xk49zqkd62pxk8bq266wrgbrqgaxp3wsrw5g9qrh"))))) (build-system gnu-build-system) (home-page "https://libexpat.github.io/") (synopsis "Stream-oriented XML parser library written in C") @@ -82,6 +88,14 @@ stream-oriented parser in which an application registers handlers for things the parser might find in the XML document (like start tags).") (license license:expat))) +(define expat/fixed + (package + (inherit expat) + (source + (origin + (inherit (package-source expat)) + (patches (search-patches "expat-CVE-2018-20843.patch")))))) + (define-public libebml (package (name "libebml") @@ -677,14 +691,14 @@ This module provide functions which simplify writing tests for (define-public perl-xml-compile (package (name "perl-xml-compile") - (version "1.62") + (version "1.63") (source (origin (method url-fetch) (uri (string-append "mirror://cpan/authors/id/M/MA/MARKOV/" "XML-Compile-" version ".tar.gz")) (sha256 (base32 - "0a75gr4qcjj8ybzljacbbkdxprbqpypz49bc0jb7cfamx1hp7p2w")))) + "0psr5pwsk2biz2bfkigmx04v2rfhs6ybwcfmcrrg7gvh9bpp222b")))) (build-system perl-build-system) (propagated-inputs `(("perl-carp" ,perl-carp) diff --git a/gnu/tests/docker.scm b/gnu/tests/docker.scm index f2674cdbe8..3ec5c3d6ee 100644 --- a/gnu/tests/docker.scm +++ b/gnu/tests/docker.scm @@ -27,7 +27,6 @@ #:use-module (gnu services networking) #:use-module (gnu services docker) #:use-module (gnu services desktop) - #:use-module (gnu packages bootstrap) ; %bootstrap-guile #:use-module (gnu packages docker) #:use-module (gnu packages guile) #:use-module (guix gexp) @@ -101,7 +100,7 @@ inside %DOCKER-OS." marionette)) (test-equal "Load docker image and run it" - '("hello world" "hi!") + '("hello world" "hi!" "JSON!") (marionette-eval `(begin (define slurp @@ -125,8 +124,15 @@ inside %DOCKER-OS." (response2 (slurp ;default entry point ,(string-append #$docker-cli "/bin/docker") "run" repository&tag - "-c" "(display \"hi!\")"))) - (list response1 response2))) + "-c" "(display \"hi!\")")) + + ;; Check whether (json) is in $GUILE_LOAD_PATH. + (response3 (slurp ;default entry point + environment + ,(string-append #$docker-cli "/bin/docker") + "run" repository&tag + "-c" "(use-modules (json)) + (display (json-string->scm (scm->json-string \"JSON!\")))"))) + (list response1 response2 response3))) marionette)) (test-end) @@ -144,7 +150,7 @@ inside %DOCKER-OS." (version "0") (source #f) (build-system trivial-build-system) - (arguments `(#:guile ,%bootstrap-guile + (arguments `(#:guile ,guile-2.2 #:builder (let ((out (assoc-ref %outputs "out"))) (mkdir out) @@ -158,7 +164,7 @@ standard output device and then enters a new line.") (home-page #f) (license license:public-domain))) (profile (profile-derivation (packages->manifest - (list %bootstrap-guile + (list guile-2.2 guile-json guest-script-package)) #:hooks '() #:locales? #f)) diff --git a/gnu/tests/install.scm b/gnu/tests/install.scm index 9f6baa1a48..124d176181 100644 --- a/gnu/tests/install.scm +++ b/gnu/tests/install.scm @@ -661,7 +661,7 @@ export GUIX_BUILD_OPTIONS=--no-grafts ls -l /run/current-system/gc-roots parted --script /dev/vdb mklabel gpt \\ mkpart primary ext2 1M 3M \\ - mkpart primary ext2 3M 1.2G \\ + mkpart primary ext2 3M 1.4G \\ set 1 boot on \\ set 1 bios_grub on echo -n thepassphrase | \\ diff --git a/gnu/tests/singularity.scm b/gnu/tests/singularity.scm index 668043a0bc..2f3a6f289d 100644 --- a/gnu/tests/singularity.scm +++ b/gnu/tests/singularity.scm @@ -111,6 +111,21 @@ "run" #$image "-c" "(exit 42)")) marionette)) + ;; FIXME: Singularity 2.x doesn't directly honor + ;; /.singularity.d/env/*.sh. Instead, you have to load those files + ;; manually, which we don't do. Remove 'test-skip' call once we've + ;; switch to Singularity 3.x. + (test-skip 1) + (test-equal "singularity run, with environment" + 0 + (marionette-eval + ;; Check whether GUILE_LOAD_PATH is properly set, allowing us to + ;; find the (json) module. + `(status:exit-val + (system* #$(file-append singularity "/bin/singularity") + "--debug" "run" #$image "-c" "(use-modules (json))")) + marionette)) + (test-end) (exit (= (test-runner-fail-count (test-runner-current)) 0))))) @@ -122,7 +137,8 @@ (guile (set-guile-for-build (default-guile))) ;; 'singularity exec' insists on having /bin/sh in the image. (profile (profile-derivation (packages->manifest - (list bash-minimal guile-2.2)) + (list bash-minimal + guile-2.2 guile-json)) #:hooks '() #:locales? #f)) (tarball (squashfs-image "singularity-pack" profile |