Merge branch 'master' into staging

author: Marius Bakke <mbakke@fastmail.com> 2019-02-14 00:20:28 +0100
committer: Marius Bakke <mbakke@fastmail.com> 2019-02-14 00:20:28 +0100
commit: 6901878894e9c6405fa811c512a32f448e8b9fa2 (patch)
tree: 5b04c4234f4022533692c36a83047ec9801aada9 /gnu
parent: baf766a7ff9db45c707b4539176f2143fbd90efd (diff)
parent: 58c6a93d9d60660d8425d8c52d4b73a42d4a5b55 (diff)
download: guix-6901878894e9c6405fa811c512a32f448e8b9fa2.tar.gz
78 files changed, 2685 insertions, 751 deletions
diff --git a/gnu/artwork.scm b/gnu/artwork.scm
index 35bfd0f967..021aaa570b 100644
--- a/gnu/artwork.scm
+++ b/gnu/artwork.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2015, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -29,7 +29,7 @@
 ;;; Code:
 
 (define %artwork-repository
-  (let ((commit "6998d30425289b087c64f63e7415df2241e591db"))
+  (let ((commit "e951905f79dcc92fba9cd05d9190afa3ee2d1d50"))
     (origin
       (method git-fetch)
       (uri (git-reference
@@ -39,6 +39,6 @@
                                 "-checkout"))
       (sha256
        (base32
-        "0k7j3pj9s3zqiqmfkapypssvzx3f12yr0cc2rbzxqfii0b4clp1j")))))
+        "1d79ackvs3bqk43ff91457qmdb6g4nwfknzs3dyrhni1ynk1i976")))))
 
 ;;; artwork.scm ends here
diff --git a/gnu/local.mk b/gnu/local.mk
index 4493470bb4..f12944c287 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -253,8 +253,9 @@ GNU_SYSTEM_MODULES =				\
   %D%/packages/jrnl.scm				\
   %D%/packages/jose.scm				\
   %D%/packages/julia.scm			\
-  %D%/packages/kde.scm              \
+  %D%/packages/kde.scm				\
   %D%/packages/kde-frameworks.scm		\
+  %D%/packages/kde-plasma.scm			\
   %D%/packages/kerberos.scm			\
   %D%/packages/key-mon.scm			\
   %D%/packages/kodi.scm				\
@@ -811,6 +812,8 @@ dist_patch_DATA =						\
   %D%/packages/patches/glibc-CVE-2017-1000366-pt1.patch		\
   %D%/packages/patches/glibc-CVE-2017-1000366-pt2.patch		\
   %D%/packages/patches/glibc-CVE-2017-1000366-pt3.patch		\
+  %D%/packages/patches/glibc-CVE-2018-11236.patch		\
+  %D%/packages/patches/glibc-CVE-2018-11237.patch		\
   %D%/packages/patches/glibc-allow-kernel-2.6.32.patch		\
   %D%/packages/patches/glibc-bootstrap-system.patch		\
   %D%/packages/patches/glibc-hidden-visibility-ldconfig.patch	\
@@ -827,6 +830,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/glog-gcc-5-demangling.patch		\
   %D%/packages/patches/gmp-arm-asm-nothumb.patch		\
   %D%/packages/patches/gmp-faulty-test.patch			\
+  %D%/packages/patches/gnome-shell-theme.patch			\
   %D%/packages/patches/gnome-todo-libical-compat.patch		\
   %D%/packages/patches/gnome-tweak-tool-search-paths.patch	\
   %D%/packages/patches/gnucash-fix-test-transaction-failure.patch \
@@ -928,7 +932,6 @@ dist_patch_DATA =						\
   %D%/packages/patches/ldc-bootstrap-disable-tests.patch	\
   %D%/packages/patches/ldc-disable-phobos-tests.patch		\
   %D%/packages/patches/ledger-fix-uninitialized.patch		\
-  %D%/packages/patches/ledger-revert-boost-python-fix.patch	\
   %D%/packages/patches/liba52-enable-pic.patch			\
   %D%/packages/patches/liba52-link-with-libm.patch		\
   %D%/packages/patches/liba52-set-soname.patch			\
@@ -1194,6 +1197,7 @@ dist_patch_DATA =						\
   %D%/packages/patches/rct-add-missing-headers.patch		\
   %D%/packages/patches/readline-link-ncurses.patch		\
   %D%/packages/patches/readline-6.2-CVE-2014-2524.patch		\
+  %D%/packages/patches/red-eclipse-remove-gamma-name-hack.patch	\
   %D%/packages/patches/reposurgeon-add-missing-docbook-files.patch	\
   %D%/packages/patches/reptyr-fix-gcc-7.patch			\
   %D%/packages/patches/ripperx-missing-file.patch		\
@@ -1205,12 +1209,14 @@ dist_patch_DATA =						\
   %D%/packages/patches/ruby-concurrent-test-arm.patch		\
   %D%/packages/patches/ruby-rack-ignore-failing-test.patch      \
   %D%/packages/patches/ruby-tzinfo-data-ignore-broken-test.patch\
+  %D%/packages/patches/runc-CVE-2019-5736.patch			\
   %D%/packages/patches/rust-1.19-mrustc.patch			\
   %D%/packages/patches/rust-1.25-accept-more-detailed-gdb-lines.patch \
   %D%/packages/patches/rust-bootstrap-stage0-test.patch		\
   %D%/packages/patches/rust-coresimd-doctest.patch		\
   %D%/packages/patches/rust-reproducible-builds.patch		 \
   %D%/packages/patches/rxvt-unicode-escape-sequences.patch	\
+  %D%/packages/patches/scalapack-blacs-mpi-deprecations.patch	\
   %D%/packages/patches/scheme48-tests.patch			\
   %D%/packages/patches/scotch-build-parallelism.patch		\
   %D%/packages/patches/scotch-integer-declarations.patch	\
diff --git a/gnu/packages/aidc.scm b/gnu/packages/aidc.scm
index 64d26548c4..afcb33ad6d 100644
--- a/gnu/packages/aidc.scm
+++ b/gnu/packages/aidc.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2014 John Darringon <jmd@gnu.org>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017 Hartmut Goebel <h.goebel@crazy-compilers.com>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -24,6 +24,8 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
+  #:use-module (gnu packages autotools)
   #:use-module (gnu packages pkg-config)
   #:use-module (gnu packages image)
   #:use-module (guix build-system gnu))
@@ -75,21 +77,28 @@ characters, and is highly robust.")
 (define-public libdmtx
   (package
     (name "libdmtx")
-    (version "0.7.4")
+    (version "0.7.5")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append
-             "mirror://sourceforge/libdmtx/" name "/" version "/"
-             name "-" version ".tar.bz2"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/dmtx/libdmtx.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
        (sha256
-        (base32 "0xnxx075ycy58n92yfda2z9zgd41h3d4ik5d9l197lzsqim5hb5n"))))
+        (base32 "0wk3fkxzf9ip75v8ia54v6ywx72ajp5s6777j4ay8barpbv869rj"))))
     (build-system gnu-build-system)
+    (arguments
+     ;; XXX Test suite is broken: https://github.com/dmtx/libdmtx/issues/22
+     `(#:tests? #f))
     (native-inputs
-     `(("pkg-config" ,pkg-config)))
-    (home-page "http://libdmtx.sourceforge.net/")
+     `(("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("libtool" ,libtool)
+       ("pkg-config" ,pkg-config)))
+    (home-page "https://github.com/dmtx")
     (synopsis "Library for reading and writing Data Matrix 2D barcodes")
     (description "libdmtx is software for reading and writing Data Matrix 2D
-barcodes on Linux and Unix.  At its core libdmtx is a shared library, allowing
+barcodes of the modern ECC200 variety.  libdmtx is a shared library, allowing
 C/C++ programs to use its capabilities without restrictions or overhead.")
     (license license:bsd-3)))
diff --git a/gnu/packages/audio.scm b/gnu/packages/audio.scm
index 64f826b3f0..8a0bb70871 100644
--- a/gnu/packages/audio.scm
+++ b/gnu/packages/audio.scm
@@ -1892,19 +1892,17 @@ significantly faster and have minimal dependencies.")
 (define-public lv2
   (package
     (name "lv2")
-    (version "1.14.0")
+    (version "1.16.0")
     (source (origin
              (method url-fetch)
              (uri (string-append "http://lv2plug.in/spec/lv2-"
                                  version ".tar.bz2"))
              (sha256
               (base32
-               "0chxwys3vnn3nxc9x2vchm74s9sx0vfra6y893byy12ci61jc1dq"))))
+               "1ppippbpdpv13ibs06b0bixnazwfhiw0d0ja6hx42jnkgdyp5hyy"))))
     (build-system waf-build-system)
     (arguments
      `(#:tests? #f  ; no check target
-       ;; XXX: The bundled waf does not work with Python 3.7.
-       #:python ,python-2
        #:configure-flags '("--no-plugins")))
     (inputs
      ;; Leaving off cairo and gtk+-2.0 which are needed for example plugins
@@ -1920,22 +1918,6 @@ add functionality to support the needs of increasingly powerful audio
 software.")
     (license license:isc)))
 
-(define-public lv2-devel
-  (let ((commit "39c7c726cd52b2863fcea356cafe1bcab2ba7f37")
-        (revision "1"))
-    (package (inherit lv2)
-      (name "lv2-devel")
-      (version (string-append "1.15.3-" revision "." (string-take commit 7)))
-      (source (origin
-                (method git-fetch)
-                (uri (git-reference
-                      (url "http://lv2plug.in/git/lv2.git")
-                      (commit commit)))
-                (file-name (git-file-name name version))
-                (sha256
-                 (base32
-                  "1gp2rd99dfmpibvpixrqn115mrhybzf3if3h8bssf6siyi13f29r")))))))
-
 (define-public lv2-mda-piano
   (package
     (name "lv2-mda-piano")
@@ -3225,7 +3207,7 @@ with support for HD extensions.")
 (define-public bs1770gain
   (package
     (name "bs1770gain")
-    (version "0.5.1")
+    (version "0.5.2")
     (source
      (origin
        (method url-fetch)
@@ -3233,7 +3215,7 @@ with support for HD extensions.")
                            version "/bs1770gain-" version ".tar.gz"))
        (sha256
         (base32
-         "0r4fbajgfmnwgl63hcm56f1j8m5f135q6j5jkzdvrrhpcj39yx06"))))
+         "1p6yz5q7czyf9ard65sp4kawdlkg40cfscr3b24znymmhs3p7rbk"))))
     (build-system gnu-build-system)
     (inputs `(("ffmpeg" ,ffmpeg)
               ("sox" ,sox)))
diff --git a/gnu/packages/backup.scm b/gnu/packages/backup.scm
index c312f23c1a..970d0adb06 100644
--- a/gnu/packages/backup.scm
+++ b/gnu/packages/backup.scm
@@ -46,6 +46,7 @@
   #:use-module (gnu packages compression)
   #:use-module (gnu packages crypto)
   #:use-module (gnu packages databases)
+  #:use-module (gnu packages datastructures)
   #:use-module (gnu packages dbm)
   #:use-module (gnu packages dejagnu)
   #:use-module (gnu packages ftp)
@@ -1001,3 +1002,30 @@ de-duplicated before it is actually written to the storage back end to save
 precious backup space.
 @end itemize")
     (license license:bsd-2)))
+
+(define-public burp
+  (package
+    (name "burp")
+    (version "2.3.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://sourceforge/burp/burp-" version
+                                  "/burp-" version ".tar.bz2"))
+              (sha256
+               (base32
+                "0in49c0ir7lb7jli0fcphdq1nh5rclhans4ngm7z7hzyxa4jrgri"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("librsync" ,librsync)
+       ("openssl" ,openssl)
+       ("uthash" ,uthash)
+       ("zlib" ,zlib)))
+    (native-inputs
+     `(("check" ,check)
+       ("pkg-config" ,pkg-config)))
+    (home-page "https://burp.grke.org")
+    (synopsis "Differential backup and restore")
+    (description "Burp is a network backup and restore program.  It attempts
+to reduce network traffic and the amount of space that is used by each
+backup.")
+    (license license:agpl3)))
diff --git a/gnu/packages/base.scm b/gnu/packages/base.scm
index 67fab7c114..db9cca6faf 100644
--- a/gnu/packages/base.scm
+++ b/gnu/packages/base.scm
@@ -892,7 +892,10 @@ with the Linux kernel.")
                                        "glibc-hidden-visibility-ldconfig.patch"
                                        "glibc-versioned-locpath.patch"
                                        "glibc-allow-kernel-2.6.32.patch"
-                                       "glibc-reinstate-prlimit64-fallback.patch"))))))
+                                       "glibc-reinstate-prlimit64-fallback.patch"
+                                       "glibc-CVE-2018-11236.patch"
+                                       "glibc-CVE-2018-11237.patch"))))
+    (properties `((lint-hidden-cve . ("CVE-2017-18269")))))) ; glibc-2.27-git-fixes
 
 (define-public glibc-2.26
   (package
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 20aabb0be4..9057158cde 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -27,6 +27,7 @@
   #:use-module (gnu packages bioinformatics)
   #:use-module (gnu packages cran)
   #:use-module (gnu packages compression)
+  #:use-module (gnu packages gcc)
   #:use-module (gnu packages graph)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages statistics)
@@ -1176,3 +1177,25 @@ Viewer (SAV) files, access data, and generate QC plots.")
      "This package provides a quality control pipeline for ChIP-exo/nexus
 sequencing data.")
     (license license:gpl2+)))
+
+(define-public r-dnacopy
+  (package
+    (name "r-dnacopy")
+    (version "1.56.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "DNAcopy" version))
+       (sha256
+        (base32
+         "04cqdqxhva66xwh1s2vffi56b9fcrqd4slcrvqasj5lp2rkjli82"))))
+    (properties `((upstream-name . "DNAcopy")))
+    (build-system r-build-system)
+    (native-inputs `(("gfortran" ,gfortran)))
+    (home-page "https://bioconductor.org/packages/DNAcopy")
+    (synopsis "DNA copy number data analysis")
+    (description
+     "This package implements the @dfn{circular binary segmentation} (CBS)
+algorithm to segment DNA copy number data and identify genomic regions with
+abnormal copy number.")
+    (license license:gpl2+)))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 02cafb2358..d6db02188f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12,6 +12,7 @@
 ;;; Copyright © 2018 Joshua Sierles, Nextjournal <joshua@nextjournal.com>
 ;;; Copyright © 2018 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2018 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
+;;; Copyright © 2019 Maxim Cournoyer <maxim.cournoyer@gmail.com>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -612,16 +613,22 @@ intended to behave exactly the same as the original BWK awk.")
 (define-public python-pybedtools
   (package
     (name "python-pybedtools")
-    (version "0.7.10")
+    (version "0.8.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "pybedtools" version))
               (sha256
                (base32
-                "0l2b2wrnj85azfqgr0zwr60f7j58vlla1hcgxvr9rwikpl8j72ji"))))
+                "1xl454ijvd4dzfvqgfahad49b49j7qy710fq9xh1rvk42z6x5ssf"))))
     (build-system python-build-system)
     (arguments
-     `(#:phases
+     `(#:modules ((ice-9 ftw)
+                  (srfi srfi-1)
+                  (srfi srfi-26)
+                  (guix build utils)
+                  (guix build python-build-system))
+       ;; See https://github.com/daler/pybedtools/issues/192
+       #:phases
        (modify-phases %standard-phases
          ;; See https://github.com/daler/pybedtools/issues/261
          (add-after 'unpack 'disable-broken-tests
@@ -631,21 +638,59 @@ intended to behave exactly the same as the original BWK awk.")
              (substitute* "pybedtools/test/test_scripts.py"
                (("def test_venn_mpl")
                 "def _do_not_test_venn_mpl"))
-             ;; Requires internet access.
              (substitute* "pybedtools/test/test_helpers.py"
+               ;; Requires internet access.
                (("def test_chromsizes")
-                "def _do_not_test_chromsizes"))
-             ;; FIXME: these two fail for no good reason.
-             (substitute* "pybedtools/test/test1.py"
-               (("def test_issue_157")
-                "def _do_not_test_issue_157")
-               (("def test_to_dataframe")
-                "def _do_not_test_to_dataframe"))
-             #t)))))
-    (propagated-inputs
-     ;; Tests don't pass with Bedtools 2.27.1.
-     ;; See https://github.com/daler/pybedtools/issues/260
-     `(("bedtools" ,bedtools-2.26)
+                "def _do_not_test_chromsizes")
+               ;; Broken as a result of the workaround used in the check phase
+               ;; (see: https://github.com/daler/pybedtools/issues/192).
+               (("def test_getting_example_beds")
+                "def _do_not_test_getting_example_beds"))
+             #t))
+         ;; TODO: Remove phase after it's part of PYTHON-BUILD-SYSTEM.
+         ;; build system.
+         ;; Force the Cythonization of C++ files to guard against compilation
+         ;; problems.
+         (add-after 'unpack 'remove-cython-generated-files
+           (lambda _
+             (let ((cython-sources (map (cut string-drop-right <> 4)
+                                        (find-files "." "\\.pyx$")))
+                   (c/c++-files (find-files "." "\\.(c|cpp|cxx)$")))
+               (define (strip-extension filename)
+                 (string-take filename (string-index-right filename #\.)))
+               (define (cythonized? c/c++-file)
+                 (member (strip-extension c/c++-file) cython-sources))
+               (for-each delete-file (filter cythonized? c/c++-files))
+               #t)))
+         (add-after 'remove-cython-generated-files 'generate-cython-extensions
+           (lambda _
+             (invoke "python" "setup.py" "cythonize")))
+         (replace 'check
+           (lambda _
+             (let* ((cwd (getcwd))
+                    (build-root-directory (string-append cwd "/build/"))
+                    (build (string-append
+                            build-root-directory
+                            (find (cut string-prefix? "lib" <>)
+                                  (scandir (string-append
+                                            build-root-directory)))))
+                    (scripts (string-append
+                              build-root-directory
+                              (find (cut string-prefix? "scripts" <>)
+                                    (scandir build-root-directory)))))
+               (setenv "PYTHONPATH"
+                       (string-append build ":" (getenv "PYTHONPATH")))
+               ;; Executable scripts such as 'intron_exon_reads.py' must be
+               ;; available in the PATH.
+               (setenv "PATH"
+                       (string-append scripts ":" (getenv "PATH"))))
+             ;; The tests need to be run from elsewhere...
+             (mkdir-p "/tmp/test")
+             (copy-recursively "pybedtools/test" "/tmp/test")
+             (with-directory-excursion "/tmp/test"
+               (invoke "pytest")))))))
+    (propagated-inputs
+     `(("bedtools" ,bedtools)
        ("samtools" ,samtools)
        ("python-matplotlib" ,python-matplotlib)
        ("python-pysam" ,python-pysam)
@@ -654,9 +699,11 @@ intended to behave exactly the same as the original BWK awk.")
      `(("python-numpy" ,python-numpy)
        ("python-pandas" ,python-pandas)
        ("python-cython" ,python-cython)
-       ("python-nose" ,python-nose)
-       ("kentutils" ,kentutils) ; for bedGraphToBigWig
-       ("python-six" ,python-six)))
+       ("kentutils" ,kentutils)         ; for bedGraphToBigWig
+       ("python-six" ,python-six)
+       ;; For the test suite.
+       ("python-pytest" ,python-pytest)
+       ("python-psutil" ,python-psutil)))
     (home-page "https://pythonhosted.org/pybedtools/")
     (synopsis "Python wrapper for BEDtools programs")
     (description
@@ -667,34 +714,7 @@ Python.")
     (license license:gpl2+)))
 
 (define-public python2-pybedtools
-  (let ((pkg (package-with-python2 python-pybedtools)))
-    (package (inherit pkg)
-      (arguments
-       `(#:modules ((ice-9 ftw)
-                    (srfi srfi-1)
-                    (srfi srfi-26)
-                    (guix build utils)
-                    (guix build python-build-system))
-         ;; See https://github.com/daler/pybedtools/issues/192
-         ,@(substitute-keyword-arguments (package-arguments pkg)
-             ((#:phases phases)
-              `(modify-phases ,phases
-                 (replace 'check
-                   (lambda _
-                     (let ((cwd (getcwd)))
-                       (setenv "PYTHONPATH"
-                               (string-append cwd "/build/"
-                                              (find (cut string-prefix? "lib" <>)
-                                                    (scandir (string-append cwd "/build")))
-                                              ":" (getenv "PYTHONPATH"))))
-                     ;; The tests need to be run from elsewhere...
-                     (mkdir-p "/tmp/test")
-                     (copy-recursively "pybedtools/test" "/tmp/test")
-                     (with-directory-excursion "/tmp/test"
-                       (invoke "nosetests"
-                               ;; This test fails for unknown reasons
-                               "--exclude=.*test_getting_example_beds"))
-                     #t))))))))))
+  (package-with-python2 python-pybedtools))
 
 (define-public python-biom-format
   (package
@@ -14441,3 +14461,39 @@ Nanopolish can calculate an improved consensus sequence for a draft genome
 assembly, detect base modifications, call SNPs (Single nucleotide
 polymorphisms) and indels with respect to a reference genome and more.")
       (license license:expat))))
+
+(define-public cnvkit
+  (package
+    (name "cnvkit")
+    (version "0.9.5")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/etal/cnvkit.git")
+             (commit (string-append "v" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "0g2f78k68yglmj4fsfmgs8idqv3di9aj53fg0ld0hqljg8chhh82"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-biopython" ,python-biopython)
+       ("python-future" ,python-future)
+       ("python-matplotlib" ,python-matplotlib)
+       ("python-numpy" ,python-numpy)
+       ("python-reportlab" ,python-reportlab)
+       ("python-pandas" ,python-pandas)
+       ("python-pysam" ,python-pysam)
+       ("python-pyfaidx" ,python-pyfaidx)
+       ("python-scipy" ,python-scipy)
+       ;; R packages
+       ("r-dnacopy" ,r-dnacopy)))
+    (home-page "https://cnvkit.readthedocs.org/")
+    (synopsis "Copy number variant detection from targeted DNA sequencing")
+    (description
+     "CNVkit is a Python library and command-line software toolkit to infer
+and visualize copy number from high-throughput DNA sequencing data.  It is
+designed for use with hybrid capture, including both whole-exome and custom
+target panels, and short-read sequencing platforms such as Illumina and Ion
+Torrent.")
+    (license license:asl2.0)))
diff --git a/gnu/packages/bootloaders.scm b/gnu/packages/bootloaders.scm
index 5bd784f73c..b0617f452a 100644
--- a/gnu/packages/bootloaders.scm
+++ b/gnu/packages/bootloaders.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2016, 2017 Danny Milosavljevic <dannym@scratchpost.org>
 ;;; Copyright © 2016, 2017 David Craven <david@craven.ch>
 ;;; Copyright © 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 nee <nee@cock.li>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -624,7 +624,25 @@ board-independent tools.")))
   (make-u-boot-package "mx6cuboxi" "arm-linux-gnueabihf"))
 
 (define-public u-boot-novena
-  (make-u-boot-package "novena" "arm-linux-gnueabihf"))
+  (let ((base (make-u-boot-package "novena" "arm-linux-gnueabihf")))
+    (package
+      (inherit base)
+      (description "U-Boot is a bootloader used mostly for ARM boards. It
+also initializes the boards (RAM etc).
+
+This U-Boot is built for Novena.  Be advised that this version, contrary
+to Novena upstream, does not load u-boot.img from the first patition.")
+      (arguments
+       (substitute-keyword-arguments (package-arguments base)
+         ((#:phases phases)
+          `(modify-phases ,phases
+             (add-after 'unpack 'patch-novena-defconfig
+               ;; Patch configuration to disable loading u-boot.img from FAT partition,
+               ;; allowing it to be installed at a device offset.
+               (lambda _
+                 (substitute* "configs/novena_defconfig"
+                   (("CONFIG_SPL_FAT_SUPPORT=y") "# CONFIG_SPL_FAT_SUPPORT is not set"))
+                 #t)))))))))
 
 (define-public u-boot-cubieboard
   (make-u-boot-package "Cubieboard" "arm-linux-gnueabihf"))
@@ -755,7 +773,7 @@ tools, and more.")
 (define-public os-prober
   (package
     (name "os-prober")
-    (version "1.76")
+    (version "1.77")
     (source
      (origin
        (method url-fetch)
@@ -763,15 +781,15 @@ tools, and more.")
                            version ".tar.xz"))
        (sha256
         (base32
-         "1vb45i76bqivlghrq7m3n07qfmmq4wxrkplqx8gywj011rhq19fk"))))
+         "0pvhrw4h05n21zw7ig3a3bi8aqdh6zxs0x1znz4g7vhspsps93ld"))))
     (build-system gnu-build-system)
     (arguments
      `(#:modules ((guix build gnu-build-system)
                   (guix build utils)
-                  (ice-9 regex)   ; for string-match
-                  (srfi srfi-26)) ; for cut
+                  (ice-9 regex)         ; for string-match
+                  (srfi srfi-26))       ; for cut
        #:make-flags (list "CC=gcc")
-       #:tests? #f ; no tests
+       #:tests? #f                      ; no tests
        #:phases
        (modify-phases %standard-phases
          (replace 'configure
diff --git a/gnu/packages/compression.scm b/gnu/packages/compression.scm
index b6f07dfa9a..0c57f1c27b 100644
--- a/gnu/packages/compression.scm
+++ b/gnu/packages/compression.scm
@@ -10,7 +10,7 @@
 ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
-;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2016 David Craven <david@craven.ch>
 ;;; Copyright © 2016, 2019 Kei Kebreau <kkebreau@posteo.net>
 ;;; Copyright © 2016, 2018 Marius Bakke <mbakke@fastmail.com>
@@ -540,14 +540,14 @@ archiving.  Lzip is a clean implementation of the LZMA algorithm.")
 (define-public lziprecover
   (package
     (name "lziprecover")
-    (version "1.20")
+    (version "1.21")
     (source (origin
               (method url-fetch)
-              (uri (string-append "mirror://savannah/lzip/" name "/"
-                                  name "-" version ".tar.gz"))
+              (uri (string-append "mirror://savannah/lzip/lziprecover/"
+                                  "lziprecover-" version ".tar.gz"))
               (sha256
                (base32
-                "0fpnmdxayvd1ff0rk9606dvr431ji6b1v71km4ww244rih1rmmzz"))))
+                "094w2z8fz41yaq0gkyr61cl7pb1d7kchpl5dka7rvm3qvbb7ncd2"))))
     (build-system gnu-build-system)
     (home-page "https://www.nongnu.org/lzip/lziprecover.html")
     (synopsis "Recover and decompress data from damaged lzip files")
@@ -1606,14 +1606,14 @@ of archives.")
 (define-public lunzip
   (package
     (name "lunzip")
-    (version "1.10")
+    (version "1.11")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://savannah/lzip/"
-                           name "/" name "-" version ".tar.gz"))
+       (uri (string-append "mirror://savannah/lzip/lunzip/"
+                           "lunzip-" version ".tar.gz"))
        (sha256
-        (base32 "1iw59br6nsxs7l1p875h8w3vxwr04xfhg5zyal64crvamhxkj5kl"))))
+        (base32 "19zq3gmlbia2krq4k4zs1j0xjdv7nsdzqvfb0pyca5n53h2mzb91"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
@@ -1633,14 +1633,14 @@ Lunzip is intended to be fully compatible with the regular lzip package.")
 (define-public clzip
   (package
     (name "clzip")
-    (version "1.10")
+    (version "1.11")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://savannah/lzip/"
-                           name "/" name "-" version ".tar.gz"))
+       (uri (string-append "mirror://savannah/lzip/clzip/"
+                           "clzip-" version ".tar.gz"))
        (sha256
-        (base32 "03xcmhl3dya4jrwmsqh09ikimpb36fr3vkh2bwfzz1sbcns0cdg3"))))
+        (base32 "1h14dmc9fi10gcdpdpbgq1bwvcxvivppilj64pf720x8mw915mfr"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
@@ -1659,17 +1659,15 @@ Clzip is intended to be fully compatible with the regular lzip package.")
 (define-public lzlib
   (package
     (name "lzlib")
-    (version "1.10")
+    (version "1.11")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://savannah/lzip/"
-                           name "/" name "-" version ".tar.gz"))
+       (uri (string-append "mirror://savannah/lzip/lzlib/"
+                           "lzlib-" version ".tar.gz"))
        (sha256
-        (base32 "0hqhnj2lzqacdbmmnpy91lsm1rd9zlngs1q6s9pyahsv1a0bfshx"))))
+        (base32 "0djdj4sg33rzi4k84cygvnp09bfsv6i8wy2k7i67rayib63myp3c"))))
     (build-system gnu-build-system)
-    ;; The included minilzip binary is only ~16 smaller than the ‘real’ lzip.
-    ;; It's used during the test suite, but don't be tempted to install it.
     (arguments
      `(#:configure-flags
        (list "CC=gcc"
@@ -1687,14 +1685,14 @@ corrupted input.")
 (define-public plzip
   (package
     (name "plzip")
-    (version "1.7")
+    (version "1.8")
     (source
      (origin
        (method url-fetch)
-       (uri (string-append "mirror://savannah/lzip/"
-                           name "/" name "-" version ".tar.gz"))
+       (uri (string-append "mirror://savannah/lzip/plzip/"
+                           "plzip-" version ".tar.gz"))
        (sha256
-        (base32 "1dzjp9r7krwpsn224bhcqbzd5aj5b4556sdi9yzl2bzbk3fjrqlm"))))
+        (base32 "04indil809qgfmz776imb3dnhkysh7zk28jcv3mw0ahl2lyaxbzd"))))
     (build-system gnu-build-system)
     (inputs
      `(("lzlib" ,lzlib)))
diff --git a/gnu/packages/coq.scm b/gnu/packages/coq.scm
index e42f8af1ab..3cd8c4cb69 100644
--- a/gnu/packages/coq.scm
+++ b/gnu/packages/coq.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2019 Dan Frumin <dfrumin@cs.ru.nl>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -42,14 +43,15 @@
   (package
     (name "coq")
     (version "8.8.2")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/coq/coq/archive/V"
-                                  version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
-              (sha256
-               (base32
-                "0i2hs0i6rp27cy8zd0mx7jscqw5cx2y0diw0pxgij66s3yr47y7r"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/coq/coq.git")
+             (commit (string-append "V" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "03v8b57mz3ivsijwxy51avzwiyhla5ijaf98a5a2q29yabdq8dkp"))))
     (native-search-paths
      (list (search-path-specification
             (variable "COQPATH")
@@ -63,6 +65,10 @@
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-after 'unpack 'make-git-checkout-writable
+           (lambda _
+             (for-each make-file-writable (find-files "."))
+             #t))
          (replace 'configure
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out (assoc-ref outputs "out"))
@@ -279,20 +285,22 @@ assistant.")
   (package
     (name "coq-mathcomp")
     (version "1.7.0")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/math-comp/math-comp/archive/mathcomp-"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39"))))
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/math-comp/math-comp.git")
+             (commit (string-append "mathcomp-" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32 "1cdzi67jj440xkdpxm10aly80zpn56vjzj2ygb67iq3xpljlv95h"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("ocaml" ,ocaml)
        ("which" ,which)
        ("coq" ,coq)))
     (arguments
-     `(#:tests? #f; No need to test formally-verified programs :)
+     `(#:tests? #f             ; no need to test formally-verified programs :)
        #:phases
        (modify-phases %standard-phases
          (delete 'configure)
@@ -492,3 +500,44 @@ work on a decision procedure for the equational theory of an extension of the
 sigma-calculus by Abadi et al.  The library is completely written in Coq and
 uses Ltac to synthesize the substitution operation.")
       (license license:bsd-3))))
+
+(define-public coq-equations
+  (package
+    (name "coq-equations")
+    (version "1.1")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/mattam82/Coq-Equations.git")
+                    (commit (string-append "v" version "-8.8"))))
+              (file-name (git-file-name name version))
+              (sha256
+               (base32
+                "129rxsdsf88vjcw0xhm74yax1hmnk6f8n9ksg0hcyyjq1ijddiwa"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("ocaml"  ,ocaml)
+       ("coq"    ,coq)
+       ("camlp5" ,camlp5)))
+    (arguments
+     `(#:test-target "test-suite"
+       #:phases
+       (modify-phases %standard-phases
+         (replace 'configure
+           (lambda* (#:key outputs #:allow-other-keys)
+             (invoke "coq_makefile" "-f" "_CoqProject" "-o" "Makefile")))
+         (replace 'install
+           (lambda* (#:key outputs #:allow-other-keys)
+             (setenv "COQLIB" (string-append (assoc-ref outputs "out") "/lib/coq/"))
+             (invoke "make"
+                     (string-append "COQLIB=" (assoc-ref outputs "out")
+                                    "/lib/coq/")
+                     "install"))))))
+    (home-page "https://mattam82.github.io/Coq-Equations/")
+    (synopsis "Function definition plugin for Coq")
+    (description "Equations provides a notation for writing programs
+by dependent pattern-matching and (well-founded) recursion in Coq.  It
+compiles everything down to eliminators for inductive types, equality
+and accessibility, providing a definitional extension to the Coq
+kernel.")
+    (license license:lgpl2.1)))
diff --git a/gnu/packages/cups.scm b/gnu/packages/cups.scm
index 6724f04ce5..c63b5ddf39 100644
--- a/gnu/packages/cups.scm
+++ b/gnu/packages/cups.scm
@@ -38,6 +38,7 @@
   #:use-module (gnu packages pdf)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages polkit)
   #:use-module (gnu packages pretty-print)
   #:use-module (gnu packages python)
   #:use-module (gnu packages python-xyz)
@@ -45,6 +46,7 @@
   #:use-module (gnu packages scanner)
   #:use-module (gnu packages tls)
   #:use-module (guix build-system gnu)
+  #:use-module (guix build-system python)
   #:use-module (guix download)
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
@@ -380,6 +382,32 @@ device-specific programs to convert and print many types of files.")
        ("cups-filters" ,cups-filters)
        ("zlib"  ,zlib)))))
 
+(define-public cups-pk-helper
+  (package
+    (name "cups-pk-helper")
+    (version "0.2.6")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://freedesktop.org/software/"
+                                  name "/releases/" name "-" version ".tar.xz"))
+              (sha256
+               (base32
+                "0a52jw6rm7lr5nbyksiia0rn7sasyb5cjqcb95z1wxm2yprgi6lm"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("intltool" ,intltool)
+       ("pkg-config" ,pkg-config)
+       ("glib" ,glib)
+       ("polkit" ,polkit)
+       ("cups" ,cups)))
+    (home-page "https://www.freedesktop.org/wiki/Software/cups-pk-helper/")
+    (synopsis "PolicyKit helper to configure CUPS with fine-grained privileges")
+    (description
+     "This package provides the org.opensuse.CupsPkHelper.Mechanism DBus
+system service which uses @file{cups-pk-helper-mechanism}.  This package
+should only be used as part of the Guix cups-pk-helper service.")
+    (license license:gpl2+)))
+
 (define-public hplip
   (package
     (name "hplip")
@@ -681,3 +709,27 @@ printers.  It can only be used with printers that support the Epson ESC/P-R
 language.")
     (home-page "http://download.ebz.epson.net/dsc/search/01/search")
     (license license:gpl2+)))
+
+(define-public python-pycups
+  (package
+    (name "python-pycups")
+    (version "1.9.74")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pycups" version ".tar.bz2"))
+       (sha256
+        (base32
+         "1ffp7sswhdsfpy88zg0cc8kl04wygkjs01rlm9f0spbwk8jhy2c6"))))
+    (build-system python-build-system)
+    (arguments
+     '(;; Tests require CUPS to be running
+       #:tests? #f))
+    (inputs
+     `(("cups" ,cups)))
+    (home-page "https://github.com/zdohnal/pycups")
+    (synopsis "Python bindings for libcups")
+    (description
+     "This package provides Python bindings for libcups, wrapping the CUPS
+API.")
+    (license license:gpl2+)))
diff --git a/gnu/packages/curl.scm b/gnu/packages/curl.scm
index 24180e0073..12a82d1bb7 100644
--- a/gnu/packages/curl.scm
+++ b/gnu/packages/curl.scm
@@ -50,6 +50,7 @@
 (define-public curl
   (package
    (name "curl")
+   (replacement curl-7.64.0)
    (version "7.63.0")
    (source (origin
             (method url-fetch)
@@ -141,6 +142,19 @@ tunneling, and so on.")
                                   "See COPYING in the distribution."))
    (home-page "https://curl.haxx.se/")))
 
+(define-public curl-7.64.0
+  (package
+    (inherit curl)
+    (version "7.64.0")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append "https://curl.haxx.se/download/curl-"
+                            version ".tar.xz"))
+        (sha256
+         (base32
+          "00b0mw4fc1pbmbh55maab24x3ijdvkbpl1s4njfa4jnl6kx16brg"))))))
+
 (define-public kurly
   (package
     (name "kurly")
diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm
index dd93747ed6..2a34f51285 100644
--- a/gnu/packages/databases.scm
+++ b/gnu/packages/databases.scm
@@ -23,7 +23,7 @@
 ;;; Copyright © 2017 Jelle Licht <jlicht@fsfe.org>
 ;;; Copyright © 2017 Adriano Peluso <catonano@gmail.com>
 ;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net>
-;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2017, 2018 Alex Vong <alexvong1995@gmail.com>
 ;;; Copyright © 2017, 2018 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017 Rutger Helling <rhelling@mykolab.com>
@@ -1070,7 +1070,7 @@ extremely small.")
 (define-public perl-dbi
   (package
     (name "perl-dbi")
-    (version "1.641")
+    (version "1.642")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1078,7 +1078,7 @@ extremely small.")
                     version ".tar.gz"))
               (sha256
                (base32
-                "1hf2x29bnqf2x1v4bdhji802z7n2mbg7h1amv8gdkqyhrlrfa2am"))))
+                "0pbzqazrx7pnw4nbyaf27in4b6yddkirbd2ws7mnqa2n7812a81z"))))
     (build-system perl-build-system)
     (synopsis "Database independent interface for Perl")
     (description "This package provides an database interface for Perl.")
@@ -1491,14 +1491,14 @@ sets, bitmaps and hyperloglogs.")
 (define-public kyotocabinet
   (package
     (name "kyotocabinet")
-    (version "1.2.76")
+    (version "1.2.77")
     (source (origin
               (method url-fetch)
               (uri (string-append "http://fallabs.com/kyotocabinet/pkg/"
                                   name "-" version ".tar.gz"))
               (sha256
                (base32
-                "0g6js20x7vnpq4p8ghbw3mh9wpqksya9vwhzdx6dnlf354zjsal1"))))
+                "1rlx4307adbzd842b4npq6cwlw8h010ingxaz3qz1ijc70lr72an"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
diff --git a/gnu/packages/disk.scm b/gnu/packages/disk.scm
index ceacd98a43..dd424461d5 100644
--- a/gnu/packages/disk.scm
+++ b/gnu/packages/disk.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2012, 2013 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2015 Mathieu Lirzin <mthl@gnu.org>
 ;;; Copyright © 2015 Mark H Weaver <mhw@netris.org>
-;;; Copyright © 2016, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2016, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org>
 ;;; Copyright © 2016 Roel Janssen <roel@gnu.org>
@@ -340,14 +340,14 @@ and can dramatically shorten the lifespan of the drive if left unchecked.")
 (define-public gparted
   (package
     (name "gparted")
-    (version "0.32.0")
+    (version "0.33.0")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "mirror://sourceforge/gparted/gparted/gparted-"
                            version "/gparted-" version ".tar.gz"))
        (sha256
-        (base32 "1fjp4c8jc0kjbbih1x1vs9v40d9lncma642kflnmy0bixxnvh7df"))))
+        (base32 "1ml1ky3s75lbxr91p608q3prsdh9x899mw7nbgk252pqhg4vh8sh"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f                      ; tests require a network connection
@@ -478,16 +478,16 @@ a card with a smaller capacity than stated.")
 (define-public duperemove
   (package
     (name "duperemove")
-    (version "0.11")
-    (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/markfasheh/duperemove/archive/v"
-                    version ".tar.gz"))
-              (sha256
-               (base32
-                "0rjmmh42yqw9a5j6sp31cqwxk3s97dsi4xz0wpxpllj7bsp3aiw5"))
-              (file-name (string-append name "-" version ".tar.gz"))))
+    (version "0.11.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/markfasheh/duperemove.git")
+             (commit (string-append "v" version))))
+       (sha256
+        (base32 "1scz76pvpljvrpfn176125xwaqwyy4pirlm11sc9spb2hyzknw2z"))
+       (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/django.scm b/gnu/packages/django.scm
index a2fa1db036..bce84449e1 100644
--- a/gnu/packages/django.scm
+++ b/gnu/packages/django.scm
@@ -38,13 +38,13 @@
 (define-public python-django
   (package
     (name "python-django")
-    (version "1.11.18")
+    (version "1.11.20")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "Django" version))
               (sha256
                (base32
-                "19b6f020als9hr4q1im5282yn2b1hzf586n9kjrlkrslq7da3k3k"))))
+                "0h90kdq8r4y8wa73hdxmyy5psnwlg61dcq3qsa098cpfiyh9vaa3"))))
     (build-system python-build-system)
     (arguments
      '(#:modules ((srfi srfi-1)
diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm
index 09f0194bf7..dbd00271b1 100644
--- a/gnu/packages/dns.scm
+++ b/gnu/packages/dns.scm
@@ -5,7 +5,7 @@
 ;;; Copyright © 2016, 2017 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 John Darrington <jmd@gnu.org>
 ;;; Copyright © 2016 Nils Gillmann <ng0@n0.is>
-;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com>
 ;;; Copyright © 2017 Vasile Dumitrascu <va511e@yahoo.com>
 ;;; Copyright © 2017 Gregor Giesen <giesen@zaehlwerk.net>
@@ -294,15 +294,14 @@ asynchronous fashion.")
 (define-public nsd
   (package
     (name "nsd")
-    (version "4.1.25")
+    (version "4.1.26")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.nlnetlabs.nl/downloads/nsd/nsd-"
                            version ".tar.gz"))
        (sha256
-        (base32
-         "0zyzjd3wmq258jiry62ci1z23qfd0rc5ggnpmybc60xvpddgynwg"))))
+        (base32 "1x0mvj4872dzj1rr9adnchdm4dhn41xmc459p5j4s0r13m1l32lz"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags
@@ -524,16 +523,16 @@ served by AS112.  Stub and forward zones are supported.")
 (define-public yadifa
   (package
     (name "yadifa")
-    (version "2.3.8")
+    (version "2.3.9")
     (source
-     (let ((build "7713"))
+     (let ((build "8497"))
        (origin
          (method url-fetch)
          (uri
           (string-append "http://cdn.yadifa.eu/sites/default/files/releases/"
-                         name "-" version "-" build ".tar.gz"))
+                         "yadifa-" version "-" build ".tar.gz"))
          (sha256
-          (base32 "15xhzg4crjcxascwpz6y8qpqcgypzv2p9bspdskp4nx1x1y4316c")))))
+          (base32 "0xvyr91sfgzkpw6g3h893ldbwnki3w2472n56rr18w67qghs1sa5")))))
     (build-system gnu-build-system)
     (native-inputs
      `(("which" ,which)))
@@ -571,14 +570,14 @@ Extensions} (DNSSEC).")
 (define-public knot
   (package
     (name "knot")
-    (version "2.7.3")
+    (version "2.7.6")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://secure.nic.cz/files/knot-dns/"
-                                  name "-" version ".tar.xz"))
+                                  "knot-" version ".tar.xz"))
               (sha256
                (base32
-                "1pwjcv7hzhqawisibybma160k77a6f1v94xw6ay9c7j49vrw05w7"))
+                "18lpyq3vgr2ainmfiy14x7hcf1zxza66bhkpr54jaz2gy1viijx1"))
               (modules '((guix build utils)))
               (snippet
                '(begin
diff --git a/gnu/packages/docker.scm b/gnu/packages/docker.scm
index 992eb0dcc1..b340f8d4a0 100644
--- a/gnu/packages/docker.scm
+++ b/gnu/packages/docker.scm
@@ -43,7 +43,7 @@
   #:use-module (gnu packages version-control)
   #:use-module (gnu packages virtualization))
 
-(define %docker-version "18.09.0")
+(define %docker-version "18.09.2")
 
 (define-public python-docker-py
   (package
@@ -241,7 +241,7 @@ network attachments.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-        "1liqbx58grqih6m8hz9y20y5waflv19pv15l3wl64skap2bsn21c"))
+        "1zfpk2n8j6gnwbrxrh6d6pj24y60dhbanpf55shrm2yxz54ka36c"))
       (patches
        (search-patches "docker-engine-test-noinstall.patch"
                        "docker-fix-tests.patch"))))
@@ -337,6 +337,7 @@ network attachments.")
                  (substitute-LookPath "blkid" "util-linux" "/sbin/blkid")
                  (substitute-LookPath "unpigz" "pigz" "/bin/unpigz")
                  (substitute-LookPath "iptables" "iptables" "/sbin/iptables")
+                 (substitute-LookPath "iptables-legacy" "iptables" "/sbin/iptables")
                  (substitute-LookPath "ip" "iproute2" "/sbin/ip")
                  (substitute-Command "modprobe" "kmod" "/bin/modprobe")
                  (substitute-Command "pvcreate" "lvm2" "/sbin/pvcreate")
@@ -483,7 +484,7 @@ provisioning etc.")
       (file-name (git-file-name name version))
       (sha256
        (base32
-        "1ivisys20kphvbqlazc3bsg7pk0ykj9gjx5d4yg439x4n13jxwvb"))))
+        "0jzcqh1kqbfyj6ax7z67gihaqgjiz6ddz6rq6k458l68v7zn77r8"))))
     (build-system go-build-system)
     (arguments
      `(#:import-path "github.com/docker/cli"
diff --git a/gnu/packages/documentation.scm b/gnu/packages/documentation.scm
index 9425df707c..9d4d5916fb 100644
--- a/gnu/packages/documentation.scm
+++ b/gnu/packages/documentation.scm
@@ -124,10 +124,14 @@ markup) can be customized and extended by the user.")
   (package
     (name "doxygen")
     (version "1.8.14")
+    (home-page "http://www.doxygen.nl/")
     (source (origin
              (method url-fetch)
-             (uri (string-append "http://ftp.stack.nl/pub/users/dimitri/"
-                                 name "-" version ".src.tar.gz"))
+             (uri (list (string-append home-page "files/doxygen-"
+                                       version ".src.tar.gz")
+                        (string-append "mirror://sourceforge/doxygen/rel-"
+                                       version "/doxygen-" version
+                                       ".src.tar.gz")))
              (sha256
               (base32
                "0kcxymbam9jwiyjwyvwdjj0h74lbb6c467szsipzbxjyfl17wxfi"))
@@ -150,7 +154,6 @@ markup) can be customized and extended by the user.")
                                    (string-append
                                     (assoc-ref inputs "bash") "/bin/sh")))
                                 #t)))))
-    (home-page "http://www.stack.nl/~dimitri/doxygen/")
     (synopsis "Generate documentation from annotated sources")
     (description "Doxygen is the de facto standard tool for generating
 documentation from annotated C++ sources, but it also supports other popular
diff --git a/gnu/packages/efi.scm b/gnu/packages/efi.scm
index 43e660743a..49ca740088 100644
--- a/gnu/packages/efi.scm
+++ b/gnu/packages/efi.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2019 Danny Milosavljevic <dannym@scratchpost.org>
+;;; Copyright © 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -29,7 +30,8 @@
   #:use-module (guix download)
   #:use-module (guix git-download)
   #:use-module (guix packages)
-  #:use-module (guix utils))
+  #:use-module (guix utils)
+  #:use-module (ice-9 match))
 
 (define-public gnu-efi
   (package
@@ -195,6 +197,12 @@ and EFI variable management.")
     (arguments
      `(#:make-flags
        (list "CC=gcc"
+             ,@(match (%current-system)
+                 ("aarch64-linux"
+                  '("ARCH=aarch64"))
+                 ("armhf-linux"
+                  '("ARCH=arm"))
+                 (_ '()))
              (string-append "INCDIR=" (assoc-ref %build-inputs "gnu-efi")
                             "/include")
              (string-append "LIBDIR=" (assoc-ref %build-inputs "gnu-efi")
diff --git a/gnu/packages/emacs-xyz.scm b/gnu/packages/emacs-xyz.scm
index 339927a4f0..957c9ea613 100644
--- a/gnu/packages/emacs-xyz.scm
+++ b/gnu/packages/emacs-xyz.scm
@@ -8918,7 +8918,7 @@ outline-mode), so there is no such thing like an outshine mode, only
 (define-public emacs-biblio
   (package
     (name "emacs-biblio")
-    (version "0.1")
+    (version "0.2")
     (source
      (origin
        (method url-fetch)
@@ -8927,7 +8927,7 @@ outline-mode), so there is no such thing like an outshine mode, only
        (file-name (string-append name "-" version ".tar.gz"))
        (sha256
         (base32
-         "109fvivsb4r0rbqljngqrmxqvbnbkqlivczx6brrvlr7ci625lhf"))))
+         "0vwrljmab8m1z83048gxx5mryml9f5pb3h0jpwkvqcl0ra152lzx"))))
     (build-system emacs-build-system)
     (propagated-inputs
      `(("emacs-seq" ,emacs-seq)
diff --git a/gnu/packages/file-systems.scm b/gnu/packages/file-systems.scm
index 066d6d843b..c778ebd21e 100644
--- a/gnu/packages/file-systems.scm
+++ b/gnu/packages/file-systems.scm
@@ -109,7 +109,7 @@ single file can be mounted.")
 (define-public disorderfs
   (package
     (name "disorderfs")
-    (version "0.5.5")
+    (version "0.5.6")
     (source
      (origin
        (method git-fetch)
@@ -119,7 +119,7 @@ single file can be mounted.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "18c32qcdzbxrzg7srnqnw1ls9yqqxyk9b996yxr6w2znw6x6n8v4"))))
+         "1zn2ydap8k9fwjl3ivgrg6l32s5p4ik6ca6j1idp7c77znlv6cpp"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/finance.scm b/gnu/packages/finance.scm
index e44be713f2..112a6eba97 100644
--- a/gnu/packages/finance.scm
+++ b/gnu/packages/finance.scm
@@ -45,6 +45,7 @@
   #:use-module (gnu packages dns)
   #:use-module (gnu packages emacs)
   #:use-module (gnu packages dbm)
+  #:use-module (gnu packages gnupg)
   #:use-module (gnu packages graphviz)
   #:use-module (gnu packages groff)
   #:use-module (gnu packages libedit)
@@ -138,7 +139,7 @@ line client and a client based on Qt.")
 (define-public ledger
   (package
     (name "ledger")
-    (version "3.1.1")
+    (version "3.1.2")
     (source
      (origin
        (method git-fetch)
@@ -147,39 +148,17 @@ line client and a client based on Qt.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "1j4p7djkmdmd858hylrsc3inamh9z0vkfl98s9wiqfmrzw51pmxp"))
-       (patches (search-patches "ledger-revert-boost-python-fix.patch"
-                                "ledger-fix-uninitialized.patch"))))
+        (base32 "0hwnipj2m9p95hhyv6kyq54m27g14r58gnsy2my883kxhpcyb2vc"))
+       (patches (search-patches "ledger-fix-uninitialized.patch"))))
     (build-system cmake-build-system)
     (arguments
-     `(#:modules ((guix build cmake-build-system)
-                  ((guix build gnu-build-system) #:prefix gnu:)
-                  (guix build utils)
-                  (guix build emacs-utils))
-       #:imported-modules (,@%cmake-build-system-modules
-                           (guix build emacs-utils))
-       #:configure-flags
+     `(#:configure-flags
        `("-DBUILD_DOCS:BOOL=ON"
          "-DBUILD_WEB_DOCS:BOOL=ON"
-         "-DBUILD_EMACSLISP:BOOL=ON"
          "-DUSE_PYTHON:BOOL=ON"
-         "-DCMAKE_INSTALL_LIBDIR:PATH=lib"
-         ,(string-append "-DUTFCPP_INCLUDE_DIR:PATH="
-                         (assoc-ref %build-inputs "utfcpp")
-                         "/include"))
-       ;; Skip failing test BaselineTest_cmd-org during the check phase.
-       ;; This is a known upstream issue. See
-       ;; https://github.com/ledger/ledger/issues/550
-       #:make-flags (list "ARGS=-E BaselineTest_cmd-org")
+         "-DCMAKE_INSTALL_LIBDIR:PATH=lib")
        #:phases
        (modify-phases %standard-phases
-         (add-after 'unpack 'boost-compat
-           (lambda _
-             (substitute* "src/utils.h"
-               ;; This library moved in Boost 1.66.  Remove for Ledger
-               ;; versions > 3.1.1.
-               (("boost/uuid/sha1.hpp") "boost/uuid/detail/sha1.hpp"))
-             #t))
          (add-before 'configure 'install-examples
            (lambda* (#:key outputs #:allow-other-keys)
              (let ((examples (string-append (assoc-ref outputs "out")
@@ -195,18 +174,11 @@ line client and a client based on Qt.")
              (setenv "TZDIR"
                      (string-append (assoc-ref inputs "tzdata")
                                     "/share/zoneinfo"))
-             #t))
-         (replace 'check (assoc-ref gnu:%standard-phases 'check))
-         (add-after 'install 'relocate-elisp
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((site-dir (string-append (assoc-ref outputs "out")
-                                             "/share/emacs/site-lisp"))
-                    (guix-dir (string-append site-dir "/guix.d"))
-                    (orig-dir (string-append site-dir "/ledger-mode"))
-                    (dest-dir (string-append guix-dir "/ledger-mode")))
-               (mkdir-p guix-dir)
-               (rename-file orig-dir dest-dir)
-               (emacs-generate-autoloads ,name dest-dir)))))))
+             ;; Skip failing test BaselineTest_cmd-org.
+             ;; This is a known upstream issue. See
+             ;; https://github.com/ledger/ledger/issues/550
+             (setenv "ARGS" "-E BaselineTest_cmd-org")
+             #t)))))
     (inputs
      `(("boost" ,boost)
        ("gmp" ,gmp)
@@ -216,8 +188,7 @@ line client and a client based on Qt.")
        ("tzdata" ,tzdata)
        ("utfcpp" ,utfcpp)))
     (native-inputs
-     `(("emacs" ,emacs-minimal)
-       ("groff" ,groff)
+     `(("groff" ,groff)
        ("texinfo" ,texinfo)))
     (home-page "https://ledger-cli.org/")
     (synopsis "Command-line double-entry accounting program")
@@ -243,8 +214,74 @@ in ability, and easy to use.")
                    license:asl2.0     ; src/strptime.cc
                    (license:non-copyleft
                     "file://src/wcwidth.cc"
-                    "See src/wcwidth.cc in the distribution.")
-                   license:gpl2+))))  ; lisp/*
+                    "See src/wcwidth.cc in the distribution.")))))
+
+(define-public emacs-ledger-mode
+  ;; There have been no new releases since 2016.
+  (let ((commit "253a20dc62e137ed0ed8e1dd8614ecba116610ea")
+        (revision "1"))
+    (package
+      (name "emacs-ledger-mode")
+      (version (git-version "3.1.1" revision commit))
+      (source
+       (origin
+         (method git-fetch)
+         (uri (git-reference
+               (url "https://github.com/ledger/ledger-mode.git")
+               (commit commit)))
+         (file-name (git-file-name name version))
+         (sha256
+          (base32 "06wrgkqpgvk17vibrk2qikdlqn8y63jg86marp1wgmram92mb3jk"))))
+      (build-system cmake-build-system)
+      (arguments
+       `(#:modules ((guix build cmake-build-system)
+                    (guix build utils)
+                    (guix build emacs-utils))
+         #:imported-modules (,@%cmake-build-system-modules
+                             (guix build emacs-utils))
+         #:tests? #f ; there are none
+         #:phases
+         (modify-phases %standard-phases
+           (add-after 'build 'build-doc
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let ((target (string-append (assoc-ref outputs "out")
+                                            "/share/info")))
+                 (mkdir-p target)
+                 (invoke "makeinfo" "-o" target
+                         "../source/doc/ledger-mode.texi"))
+               #t))
+           (add-after 'install 'relocate-elisp
+             (lambda* (#:key outputs #:allow-other-keys)
+               (let* ((site-dir (string-append (assoc-ref outputs "out")
+                                               "/share/emacs/site-lisp"))
+                      (guix-dir (string-append site-dir "/guix.d"))
+                      (orig-dir (string-append site-dir "/ledger-mode"))
+                      (dest-dir (string-append guix-dir "/ledger-mode")))
+                 (mkdir-p guix-dir)
+                 (rename-file orig-dir dest-dir)
+                 (emacs-generate-autoloads ,name dest-dir)
+                 #t))))))
+      (native-inputs
+       `(("emacs-minimal" ,emacs-minimal)
+         ("texinfo" ,texinfo)))
+      (home-page "https://ledger-cli.org/")
+      (synopsis "Command-line double-entry accounting program")
+      (description
+       "Ledger is a powerful, double-entry accounting system that is
+accessed from the UNIX command-line.  This may put off some users, since
+there is no flashy UI, but for those who want unparalleled reporting
+access to their data there are few alternatives.
+
+Ledger uses text files for input.  It reads the files and generates
+reports; there is no other database or stored state.  To use Ledger,
+you create a file of your account names and transactions, run from the
+command line with some options to specify input and requested reports, and
+get output.  The output is generally plain text, though you could generate
+a graph or html instead.  Ledger is simple in concept, surprisingly rich
+in ability, and easy to use.
+
+This package provides the Emacs mode.")
+      (license license:gpl2+))))
 
 (define-public geierlein
   (package
@@ -591,7 +628,7 @@ Monero GUI client.")
 (define-public python-trezor-agent
   (package
     (name "python-trezor-agent")
-    (version "0.9.4")
+    (version "0.13.0")
     (source
      (origin
        (method git-fetch)
@@ -600,11 +637,18 @@ Monero GUI client.")
              (commit (string-append "v" version))))
        (file-name (git-file-name name version))
        (sha256
-        (base32 "15aaqk79d9y9nbsfznf2iscz12z5ispcj8kr8v5bc0sqqj2brs12"))))
+        (base32 "0i4igkxi8fwdlbhg6nx27lhnc9v9nmrw4j5fvpnc202n6yjlc7x7"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
        (modify-phases %standard-phases
+         (add-after 'unpack 'remove-requires-backports-shutil-which
+           ;; Remove requires on backport of shutil_which, as python 3.4+ has
+           ;; a built-in implementation supported in python-trezor-agent.
+           (lambda _
+             (substitute* "setup.py"
+               (("'backports.shutil_which>=3.5.1',") ""))
+             #t))
          (delete 'check)
          (add-after 'install 'check
            (lambda* (#:key outputs inputs #:allow-other-keys)
@@ -612,15 +656,22 @@ Monero GUI client.")
              (add-installed-pythonpath inputs outputs)
              (invoke "py.test"))))))
     (propagated-inputs
-     `(("python-ecdsa" ,python-ecdsa)
+     `(("python-configargparse" ,python-configargparse)
+       ("python-daemon" ,python-daemon)
+       ("python-docutils" ,python-docutils)
+       ("python-ecdsa" ,python-ecdsa)
        ("python-ed25519" ,python-ed25519)
+       ("python-mnemonic" ,python-mnemonic)
+       ("python-pymsgbox" ,python-pymsgbox)
        ("python-semver" ,python-semver)
-       ("python-unidecode" ,python-unidecode)))
+       ("python-unidecode" ,python-unidecode)
+       ("python-wheel" ,python-wheel)))
     (native-inputs
-     `(("python-mock" ,python-mock)
+     `(("gnupg" ,gnupg)
+       ("python-mock" ,python-mock)
        ("python-pytest" ,python-pytest)))
     (home-page "https://github.com/romanz/trezor-agent")
-    (synopsis "TREZOR SSH and GPG host support")
+    (synopsis "Use hardware wallets as SSH and GPG agent")
     (description
      "@code{libagent} is a library that allows using TREZOR, Keepkey and
 Ledger Nano as a hardware SSH/GPG agent.")
@@ -789,19 +840,32 @@ Then set the environment variable GNUPGHOME to
 (define-public trezor-agent
   (package
     (name "trezor-agent")
-    (version "0.9.0")
+    (version "0.10.0")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "trezor_agent" version))
        (sha256
         (base32
-         "1i5cdamlf3c0ym600pjklij74p8ifj9cv7xrpnrfl1b8nkadswbz"))))
+         "144657c7bn0a667dq5fv5r6j7iilxf3h9agj29v1m2qpq40g0az8"))))
+    (arguments
+     ;; Tests fail with "AttributeError: module 'attr' has no attribute 's'".
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'wrap 'fixup-agent-py
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out")))
+               ;; overwrite the wrapper with the real thing.
+               (install-file "./trezor_agent.py"
+                             (string-append out "/bin"))
+             #t))))))
     (build-system python-build-system)
     (inputs
      `(("python-trezor" ,python-trezor)
        ("python-trezor-agent" ,python-trezor-agent)))
-    (home-page "http://github.com/romanz/trezor-agent")
+    (native-inputs
+     `(("python-hidapi" ,python-hidapi)))
+    (home-page "https://github.com/romanz/trezor-agent")
     (synopsis "Using Trezor as hardware SSH/GPG agent")
     (description "This package allows using Trezor as a hardware SSH/GPG
 agent.")
diff --git a/gnu/packages/fonts.scm b/gnu/packages/fonts.scm
index f77f9da163..9d49c02cf6 100644
--- a/gnu/packages/fonts.scm
+++ b/gnu/packages/fonts.scm
@@ -23,6 +23,7 @@
 ;;; Copyright © 2017 Mohammed Sadiq <sadiq@sadiqpk.org>
 ;;; Copyright © 2018 Charlie Ritter <chewzerita@posteo.net>
 ;;; Copyright © 2018 Gabriel Hondet <gabrielhondet@gmail.com>
+;;; Copyright © 2019 Jens Mølgaard <jens@zete.tk>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -857,6 +858,56 @@ Powerline support.")
 designed to work well in user interface environments.")
     (license license:silofl1.1)))
 
+(define-public font-adobe-source-sans-pro
+  (package
+    (name "font-adobe-source-sans-pro")
+    (version "2.040R-ro-1.090R-it")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/adobe-fonts/source-sans-pro/archive/"
+                    (regexp-substitute/global
+                     ;; The upstream tag uses "/" between the roman and italic
+                     ;; versions, so substitute our "-" separator here.
+                     #f "R-ro-" version 'pre "R-ro/" 'post) ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1wpbhd2idps53ph8rg1mhr3vz4lsgbpjprcq10nliwcxdz9d8lv0"))))
+    (build-system font-build-system)
+    (home-page "https://github.com/adobe-fonts/source-sans-pro")
+    (synopsis
+     "Sans serif font family for user interface environments")
+    (description
+     "Source Sans Pro is a set of OpenType fonts that have been designed to
+work well in user interface (UI) environments.")
+    (license license:silofl1.1)))
+
+(define-public font-adobe-source-serif-pro
+  (package
+    (name "font-adobe-source-serif-pro")
+    (version "2.007R-ro-1.007R-it")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/adobe-fonts/source-serif-pro/archive/"
+                    (regexp-substitute/global
+                     ;; The upstream tag uses "/" between the roman and italic
+                     ;; versions, so substitute our "-" separator here.
+                     #f "R-ro-" version 'pre "R-ro/" 'post) ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "1sws9k26ldqk375qsigk1zv8cq1xlvadjwvv3dqrcc3qzm1c7hwc"))))
+    (build-system font-build-system)
+    (home-page "https://github.com/adobe-fonts/source-serif-pro")
+    (synopsis
+     "Serif typeface to complement Source Sans Pro for setting text")
+    (description
+     "Source Serif Pro is a set of OpenType fonts to complement the Source
+Sans Pro family.")
+    (license license:silofl1.1)))
+
 (define-public font-fira-mono
   (package
     (name "font-fira-mono")
diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm
index 5d7c89a880..de53ac798d 100644
--- a/gnu/packages/games.scm
+++ b/gnu/packages/games.scm
@@ -2843,7 +2843,9 @@ http://lavachat.symlynx.com/unix/")
                 (file-name (string-append name "-" version ".tar.gz"))
                 (sha256
                  (base32
-                  "1vs9k6f5fgsiy1n72imlqm8khjwm8cryc08zwd4gr7yxlxv45bs0"))))
+                  "1vs9k6f5fgsiy1n72imlqm8khjwm8cryc08zwd4gr7yxlxv45bs0"))
+                (patches
+                 (search-patches "red-eclipse-remove-gamma-name-hack.patch"))))
       (build-system gnu-build-system)
       (arguments
        `(#:tests? #f            ; no check target
diff --git a/gnu/packages/gnome.scm b/gnu/packages/gnome.scm
index b05b2d7879..a3412885a6 100644
--- a/gnu/packages/gnome.scm
+++ b/gnu/packages/gnome.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013, 2015 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
 ;;; Copyright © 2014, 2016 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch>
@@ -126,6 +126,7 @@
   #:use-module (gnu packages python-xyz)
   #:use-module (gnu packages rdesktop)
   #:use-module (gnu packages readline)
+  #:use-module (gnu packages ruby)
   #:use-module (gnu packages samba)
   #:use-module (gnu packages scanner)
   #:use-module (gnu packages selinux)
@@ -149,6 +150,7 @@
   #:use-module (gnu packages xml)
   #:use-module (gnu packages xorg)
   #:use-module (gnu packages xorg)
+  #:use-module (gnu artwork)
   #:use-module (guix build-system cmake)
   #:use-module (guix build-system glib-or-gtk)
   #:use-module (guix build-system gnu)
@@ -159,6 +161,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix utils)
+  #:use-module (guix gexp)
   #:use-module (ice-9 match)
   #:use-module (srfi srfi-1))
 
@@ -972,6 +975,88 @@ for translations, though this is only a dependency for the maintainers.  This
 database is translated at Transifex.")
     (license license:gpl2+)))
 
+(define-public system-config-printer
+  (package
+    (name "system-config-printer")
+    (version "1.5.11")
+    (source (origin
+             (method url-fetch)
+             (uri (string-append
+                   "https://github.com/zdohnal/system-config-printer/releases/"
+                   "download/" version
+                   "/system-config-printer-" version ".tar.xz"))
+             (sha256
+              (base32
+               "1lq0q51bhanirpjjvvh4xiafi8hgpk8r32h0dj6dn3f32z8pib9q"))))
+    (build-system glib-or-gtk-build-system)
+    (arguments
+     `(#:imported-modules ((guix build python-build-system)
+                           ,@%glib-or-gtk-build-system-modules)
+       #:phases
+       (modify-phases %standard-phases
+         (add-after 'unpack 'patch-Makefile.am
+           (lambda _
+             ;; The Makefile generates some scripts, so set a valid shebang
+             (substitute* "Makefile.am"
+               (("/bin/bash") (which "bash")))
+             (delete-file "configure")
+             #t))
+         (add-after 'unpack 'patch-docbook-xml
+           (lambda* (#:key inputs #:allow-other-keys)
+             ;; Modify the man XML otherwise xmlto tries to access the network
+             (substitute* "man/system-config-printer.xml"
+               (("http://www.oasis-open.org/docbook/xml/4.1.2/")
+                (string-append (assoc-ref inputs "docbook-xml")
+                               "/xml/dtd/docbook/")))
+             #t))
+         (add-after 'install 'wrap-for-python
+           (@@ (guix build python-build-system) wrap))
+         (add-after 'install 'wrap
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let ((out               (assoc-ref outputs "out"))
+                   (gi-typelib-path   (getenv "GI_TYPELIB_PATH")))
+               (for-each
+                (lambda (program)
+                  (wrap-program program
+                    `("GI_TYPELIB_PATH" ":" prefix (,gi-typelib-path))))
+                (map (lambda (name)
+                       (string-append out "/bin/" name))
+                     '("system-config-printer"
+                       "system-config-printer-applet"
+                       "install-printerdriver"
+                       "scp-dbus-service"))))
+             #t)))))
+    (inputs
+     `(("gsettings-desktop-schemas" ,gsettings-desktop-schemas)
+       ("gobject-introspection" ,gobject-introspection)
+       ("python" ,python)
+       ("cups" ,cups)
+       ("python-dbus" ,python-dbus)
+       ("python-pygobject" ,python-pygobject)
+       ("python-pycups" ,python-pycups)
+       ("python-requests" ,python-requests)
+       ("python-pycairo" ,python-pycairo)
+       ("libnotify" ,libnotify)
+       ("packagekit" ,packagekit)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)
+       ("desktop-file-utils" ,desktop-file-utils)
+       ("glib" ,glib)
+       ("autoconf" ,autoconf)
+       ("automake" ,automake)
+       ("intltool" ,intltool)
+       ("xmlto" ,xmlto)
+       ("docbook-xml" ,docbook-xml-4.1.2)
+       ("docbook-xsl" ,docbook-xsl)
+       ("libxml2" ,libxml2)))
+    (home-page "https://github.com/zdohnal/system-config-printer")
+    (synopsis "CUPS administration tool")
+    (description
+     "system-config-printer is a CUPS administration tool.  It's written in
+Python using GTK+, and uses the @acronym{IPP, Internet Printing Protocol} when
+configuring CUPS.")
+    (license license:gpl2+)))
+
 (define-public hicolor-icon-theme
   (package
     (name "hicolor-icon-theme")
@@ -4572,16 +4657,6 @@ such as gzip tarballs.")
                    (out  (assoc-ref outputs "out")))
                (wrap-program (string-append out "/bin/gnome-session")
                  `("PATH" ":" prefix (,(string-append glib "/bin"))))
-               #t)))
-         (add-after 'install 'disable-hardware-acceleration-check
-           (lambda* (#:key outputs #:allow-other-keys)
-             ;; Do not abort if hardware acceleration is missing.  This allows
-             ;; GNOME to run in QEMU and on low-end devices.
-             (let ((out (assoc-ref outputs "out")))
-               (substitute* (string-append out
-                                           "/share/xsessions/gnome.desktop")
-                 (("gnome-session")
-                  "gnome-session --disable-acceleration-check"))
                #t))))
 
        #:configure-flags
@@ -5580,11 +5655,37 @@ properties, screen resolution, and other GNOME parameters.")
                                   name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1f20x36ymkp1j667hb7s7byly2gqc4m0anldy3qwp38vm8437caq"))))
+                "1f20x36ymkp1j667hb7s7byly2gqc4m0anldy3qwp38vm8437caq"))
+              (patches (search-patches "gnome-shell-theme.patch"))
+              (modules '((guix build utils)))
+              (snippet
+               #~(begin
+                   ;; CSS files have to be regenerated from the .scss source
+                   ;; that 'gnome-shell-theme.patch' modifies.
+                   (for-each delete-file
+                             (find-files "data/theme"
+                                         "^gnome-shell.*\\.css$"))
+
+                   ;; Copy images for use on the GDM log-in screen.
+                   (copy-file #$(file-append %artwork-repository
+                                             "/slim/0.x/background.png")
+                              "data/theme/guix-background.png")
+                   (invoke #+(file-append inkscape "/bin/inkscape")
+                           "--export-png=data/theme/guix-logo.png"
+                           #$(file-append %artwork-repository
+                                          "/logo/Guix-horizontal-white.svg"))
+                   #t))))
     (build-system glib-or-gtk-build-system)
     (arguments
      '(#:phases
        (modify-phases %standard-phases
+         (add-before 'build 'rebuild-css
+           (lambda _
+             ;; Rebuild the CSS files from the .scss files that our patch
+             ;; modifies.
+             (invoke "make" "-C" "data"
+                     "theme/gnome-shell.css"
+                     "theme/gnome-shell-high-contrast.css")))
          (replace 'install
            (lambda* (#:key outputs #:allow-other-keys)
              (let* ((out     (assoc-ref outputs "out"))
@@ -5614,7 +5715,8 @@ properties, screen resolution, and other GNOME parameters.")
        ("intltool" ,intltool)
        ("pkg-config" ,pkg-config)
        ("python" ,python)
-       ("xsltproc" ,libxslt)))
+       ("xsltproc" ,libxslt)
+       ("ruby-sass" ,ruby-sass)))
     (inputs
      `(("accountsservice" ,accountsservice)
        ("caribou" ,caribou)
@@ -6048,6 +6150,7 @@ associations for GNOME.")
        ("pinentry-gnome3"           ,pinentry-gnome3)
        ("pulseaudio"                ,pulseaudio)
        ("shared-mime-info"          ,shared-mime-info)
+       ("system-config-printer"     ,system-config-printer)
        ("totem"                     ,totem)
        ("xdg-user-dirs"             ,xdg-user-dirs)
        ("yelp"                      ,yelp)
diff --git a/gnu/packages/gnupg.scm b/gnu/packages/gnupg.scm
index 2b3ee89d35..7a7ff966bb 100644
--- a/gnu/packages/gnupg.scm
+++ b/gnu/packages/gnupg.scm
@@ -138,7 +138,7 @@ generation.")
 (define-public libassuan
   (package
     (name "libassuan")
-    (version "2.5.2")
+    (version "2.5.3")
     (source
      (origin
       (method url-fetch)
@@ -146,7 +146,7 @@ generation.")
                           version ".tar.bz2"))
       (sha256
        (base32
-        "1rw8nw6fx6ppxga6m4cqcp898lnlzf7vn3s5c2lzfxg3fzr1nswq"))))
+        "00p7cpvzf0q3qwcgg51r9d0vbab4qga2xi8wpk2fgd36710b1g4i"))))
     (build-system gnu-build-system)
     (propagated-inputs
      `(("libgpg-error" ,libgpg-error)
@@ -224,14 +224,14 @@ compatible to GNU Pth.")
 (define-public gnupg
   (package
     (name "gnupg")
-    (version "2.2.12")
+    (version "2.2.13")
     (source (origin
               (method url-fetch)
               (uri (string-append "mirror://gnupg/gnupg/gnupg-" version
                                   ".tar.bz2"))
               (sha256
                (base32
-                "1jw282iy27j1qygym52aa44zxy7ly4bdadhd628hwr4q9j5hy0yv"))))
+                "1n0igfn9nwdajzkcgdx7apwm9m5rpw0fg6vwskmf1rpranlqgivn"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
diff --git a/gnu/packages/gps.scm b/gnu/packages/gps.scm
index 92f6a4f977..3f3fe8fcb5 100644
--- a/gnu/packages/gps.scm
+++ b/gnu/packages/gps.scm
@@ -147,7 +147,7 @@ between two other data points.")
 (define-public gama
   (package
     (name "gama")
-    (version "2.02")
+    (version "2.03")
     (source
       (origin
         (method url-fetch)
@@ -155,7 +155,7 @@ between two other data points.")
                             version ".tar.gz"))
         (sha256
          (base32
-          "1r5rrmiqdg6dpxqla0f2mjwcjzlckdjpg4ar0cirmz78w78hf6vn"))))
+          "0d33yyasnx54c6i40rkr9by4qv92rqb8wkmp5r46nz7bbp9kpymv"))))
     (build-system gnu-build-system)
     (arguments '(#:parallel-tests? #f)) ; race condition
     (native-inputs
diff --git a/gnu/packages/guile-xyz.scm b/gnu/packages/guile-xyz.scm
index ae05197e16..a48954e7f2 100644
--- a/gnu/packages/guile-xyz.scm
+++ b/gnu/packages/guile-xyz.scm
@@ -1963,8 +1963,8 @@ format is also supported.")
   (deprecated-package "mcron2" mcron))
 
 (define-public guile-picture-language
-  (let ((commit "1531116036d1b5e0d2482ff2c8d77ad21f1d2bef")
-        (revision "1"))
+  (let ((commit "1ea8b78a8bceb4f7e5eaeb3e76987072267f99bb")
+        (revision "2"))
     (package
       (name "guile-picture-language")
       (version (git-version "0" revision commit))
@@ -1975,7 +1975,7 @@ format is also supported.")
                       (commit commit)))
                 (sha256
                  (base32
-                  "04salmqf5x84vb3qkkxx47b64jyl290zsf3ik81l9hg6fwvvlmq3"))))
+                  "1rvq6q2zq21x7dx0qq1hn568wglsl4bkd8gacbarcx1fs0rrxcqw"))))
       (build-system guile-build-system)
       (inputs
        `(("guile" ,guile-2.2)))
diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm
index 255e902e66..21a5177927 100644
--- a/gnu/packages/haskell.scm
+++ b/gnu/packages/haskell.scm
@@ -11493,4 +11493,112 @@ imported with the correct Haskell types.")
 Music Player Daemon.")
     (license license:expat)))
 
+(define-public ghc-alsa-core
+  (package
+    (name "ghc-alsa-core")
+    (version "0.5.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "mirror://hackage/package/alsa-core/alsa-core-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "1avh4a419h9d2zsslg6j8hm87ppgsgqafz8ll037rk2yy1g4jl7b"))))
+    (build-system haskell-build-system)
+    (inputs
+     `(("ghc-extensible-exceptions" ,ghc-extensible-exceptions)
+       ("alsa-lib" ,alsa-lib)))
+    (native-inputs
+     `(("pkg-config" ,pkg-config)))
+    (home-page "http://www.haskell.org/haskellwiki/ALSA")
+    (synopsis "Binding to the ALSA Library API (Exceptions)")
+    (description "This package provides access to ALSA infrastructure, that is
+needed by both alsa-seq and alsa-pcm.")
+    (license license:bsd-3)))
+
+(define-public ghc-base-unicode-symbols
+  (package
+    (name "ghc-base-unicode-symbols")
+    (version "0.2.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append
+             "mirror://hackage/package/base-unicode-symbols/base-unicode-symbols-"
+             version
+             ".tar.gz"))
+       (sha256
+        (base32
+         "1ia6li7qjg1zkak4gf6mnbshw45mq9bfjr0jch58ds0lscmvwyzf"))))
+    (build-system haskell-build-system)
+    (home-page "http://www.haskell.org/haskellwiki/Unicode-symbols")
+    (synopsis "Unicode alternatives for common functions and operators")
+    (description "This package defines new symbols for a number of functions,
+operators and types in the base package.  All symbols are documented with
+their actual definition and information regarding their Unicode code point.
+They should be completely interchangeable with their definitions.  For
+further Unicode goodness you can enable the @code{UnicodeSyntax}
+@url{https://downloads.haskell.org/~ghc/latest/docs/html/users_guide/glasgow_exs.html#unicode-syntax,
+language extension}.  This extension enables Unicode characters to be used to
+stand for certain ASCII character sequences, i.e. → instead of @code{->},
+∀ instead of @code{forall} and many others.")
+    (license license:bsd-3)))
+
+(define-public ghc-stylish-haskell
+  (package
+    (name "ghc-stylish-haskell")
+    (version "0.9.2.1")
+    (source
+      (origin
+        (method url-fetch)
+        (uri (string-append
+               "mirror://hackage/package/stylish-haskell/stylish-haskell-"
+               version
+               ".tar.gz"))
+        (sha256
+          (base32
+            "1ls11fdx6snvfx8yykpidz142zzxwi5bazl49hgfqlwx50rqcp7w"))))
+    (build-system haskell-build-system)
+    (inputs
+      `(("ghc-aeson" ,ghc-aeson)
+        ("ghc-file-embed" ,ghc-file-embed)
+        ("ghc-haskell-src-exts" ,ghc-haskell-src-exts)
+        ("ghc-semigroups" ,ghc-semigroups)
+        ("ghc-syb" ,ghc-syb)
+        ("ghc-yaml" ,ghc-yaml)
+        ("ghc-strict" ,ghc-strict)
+        ("ghc-optparse-applicative"
+         ,ghc-optparse-applicative)))
+    (native-inputs
+      `(("ghc-hunit" ,ghc-hunit)
+        ("ghc-test-framework" ,ghc-test-framework)
+        ("ghc-test-framework-hunit" ,ghc-test-framework-hunit)))
+    (home-page "https://github.com/jaspervdj/stylish-haskell")
+    (synopsis "Haskell code prettifier")
+    (description "Stylish-haskell is a Haskell code prettifier.  The goal is
+not to format all of the code in a file, to avoid \"getting in the way\".
+However, this tool can e.g. clean up import statements and help doing various
+tasks that get tedious very quickly.  It can
+@itemize
+@item
+Align and sort @code{import} statements
+@item
+Group and wrap @code{{-# LANGUAGE #-}} pragmas, remove (some) redundant
+pragmas
+@item
+Remove trailing whitespaces
+@item
+Align branches in @code{case} and fields in records
+@item
+Convert line endings (customisable)
+@item
+Replace tabs by four spaces (turned off by default)
+@item
+Replace some ASCII sequences by their Unicode equivalent (turned off by
+default)
+@end itemize")
+    (license license:bsd-3)))
 ;;; haskell.scm ends here
diff --git a/gnu/packages/image-viewers.scm b/gnu/packages/image-viewers.scm
index 895802cc94..417989050c 100644
--- a/gnu/packages/image-viewers.scm
+++ b/gnu/packages/image-viewers.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
 ;;; Copyright © 2017 nee <nee-git@hidamari.blue>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -62,7 +62,7 @@
 (define-public feh
   (package
     (name "feh")
-    (version "3.1.1")
+    (version "3.1.2")
     (home-page "https://feh.finalrewind.org/")
     (source (origin
               (method url-fetch)
@@ -70,7 +70,7 @@
                                   name "-" version ".tar.bz2"))
               (sha256
                (base32
-                "1sy8z6rv5sy1bhk3846hgfdy96wdi874yr2fnxfprks46qp29l31"))))
+                "0qjhlrgr606gc9h96w9piyd13mx63jqfbxxnan41nrh76m8d0dka"))))
     (build-system gnu-build-system)
     (arguments
      '(#:phases (modify-phases %standard-phases (delete 'configure))
diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm
index 6457127520..f217c3611a 100644
--- a/gnu/packages/image.scm
+++ b/gnu/packages/image.scm
@@ -321,7 +321,7 @@ Currently all documentation resides in @file{pnglite.h}.")
    (version "9c")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://www.ijg.org/files/jpegsrc.v"
+            (uri (string-append "https://www.ijg.org/files/jpegsrc.v"
                    version ".tar.gz"))
             (sha256 (base32
                      "08kixcf3a7s9x91174abjnk1xbvj4v8crdc73zi4k9h3jfbm00k5"))))
@@ -342,14 +342,14 @@ lossless JPEG manipulations such as rotation, scaling or cropping:
 @item wrjpgcom
 @end enumerate")
    (license license:ijg)
-   (home-page "http://www.ijg.org/")))
+   (home-page "https://www.ijg.org/")))
 
 (define-public libjpeg-8
   (package (inherit libjpeg)
    (version "8d")
    (source (origin
             (method url-fetch)
-            (uri (string-append "http://www.ijg.org/files/jpegsrc.v"
+            (uri (string-append "https://www.ijg.org/files/jpegsrc.v"
                    version ".tar.gz"))
             (sha256 (base32
                      "1cz0dy05mgxqdgjf52p54yxpyy95rgl30cnazdrfmw7hfca9n0h0"))))))
diff --git a/gnu/packages/kde-frameworks.scm b/gnu/packages/kde-frameworks.scm
index 5068de22bb..c9b464c2c5 100644
--- a/gnu/packages/kde-frameworks.scm
+++ b/gnu/packages/kde-frameworks.scm
@@ -78,7 +78,7 @@
 (define-public extra-cmake-modules
   (package
     (name "extra-cmake-modules")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -87,7 +87,7 @@
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "07pdgjyrxniacqcfvrzw8ij3kasx5pkbq38k6491qbhzfm8vi7y0"))))
+                "0i3iqwvdqf2wpg8lsbna4vgmb18pnbv2772sg9k6zzhvkwsskdwi"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("qtbase" ,qtbase))) ; For tests (needs qmake)
@@ -253,7 +253,7 @@ Phonon-GStreamer is a backend based on the GStreamer multimedia library.")
 (define-public attica
   (package
     (name "attica")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -262,7 +262,7 @@ Phonon-GStreamer is a backend based on the GStreamer multimedia library.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1iqclahs9yzyjnkzbzr8hl9j6q8m2djdm6mix92xwrakgirnl3gn"))))
+                "1gr7w0mf3aq5xyl9il3483m9aqgb981vxn02g2khm6dfsr6z2aln"))))
     (build-system cmake-build-system)
     (arguments
      `(#:phases
@@ -293,7 +293,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/")
 (define-public bluez-qt
   (package
     (name "bluez-qt")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -302,7 +302,7 @@ http://freedesktop.org/wiki/Specifications/open-collaboration-services/")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0mgnq7w52ksr8b7ys2f1m3irnviy011bsaggh489fjy0xlzk5ard"))))
+                "1br9496lahzqmzmvdic5835ig18w3g211l1w4qfzpgr50yin9n5v"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("dbus" ,dbus)
@@ -326,7 +326,7 @@ Bluetooth stack.  It is used by the KDE Bluetooth stack, BlueDevil.")
 (define-public breeze-icons
   (package
     (name "breeze-icons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -335,23 +335,8 @@ Bluetooth stack.  It is used by the KDE Bluetooth stack, BlueDevil.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "178620hhqlv6dl8qal2bmiw55s8b3p4h16q8cgkmq5q5i59nzcph"))))
+                "1g5dppg2iq5bd3r3s8bi8jqnvnh1rm7s3sv51shmaamq5qf0n5jy"))))
     (build-system cmake-build-system)
-    (arguments
-     `(#:phases
-       (modify-phases %standard-phases
-         (add-after 'unpack 'add-symlinks
-           ;; Fix "ScalableTest" - FIXME: Remove for > 5.49.0
-           (lambda _
-             (symlink "../22/plasma-browser-integration.svg"
-                      "icons-dark/apps/48/plasma-browser-integration.svg")
-             (symlink "../22/plasma-browser-integration.svg"
-                      "icons-dark/apps/64/plasma-browser-integration.svg")
-             (symlink "../22/plasma-browser-integration.svg"
-                      "icons/apps/48/plasma-browser-integration.svg")
-             (symlink "../22/plasma-browser-integration.svg"
-                      "icons/apps/64/plasma-browser-integration.svg")
-             #t)))))
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
        ("fdupes" ,fdupes)
@@ -370,7 +355,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.")
 (define-public kapidox
   (package
     (name "kapidox")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -379,7 +364,7 @@ It is the default icon theme for the KDE Plasma 5 desktop.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "09jph3hvasqx1ia0l7is9brc08nxvh9qmg8564nh5cmqaxdwj559"))))
+                "0zwjychzcamsky9l67xnw820b9m8r8pi56gsccg023l1rcigz46c"))))
     (build-system cmake-build-system)
     (arguments
      `(#:tests? #f)) ; has no test target
@@ -412,7 +397,7 @@ documentation.")
 (define-public karchive
   (package
     (name "karchive")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -421,7 +406,7 @@ documentation.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1p1gwqda2bsjdysp4ggwdsldbasyfl075xn3wchqyakdv2bdzmn0"))))
+                "141xqgdk7g3ky0amblrqr4pab1xvvdim5wvckrgawdkjiy5ana4g"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -446,7 +431,7 @@ GZip format, via a subclass of QIODevice.")
 (define-public kcodecs
   (package
     (name "kcodecs")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -455,7 +440,7 @@ GZip format, via a subclass of QIODevice.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "07va63gsfjrc5ha9rdli923cwyzxpb3v8xgf1zfhw75cfkgda3nz"))))
+                "1s0ky187fbi34wabpfvdwb1zbblzvk8g83h37ckj9j4rd69mjksc"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -482,7 +467,7 @@ Internet).")
 (define-public kconfig
   (package
     (name "kconfig")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -491,10 +476,11 @@ Internet).")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0cb3crnlr8hr5npq3ykfxqd4yckmkykzrrizfs89ryhmznc2ngsf"))))
+                "14p4w0m04c8msdwb3mjfzx6w0lcmln65j3rfvqp58nv5n4yh5dp7"))))
     (build-system cmake-build-system)
     (native-inputs
-     `(("extra-cmake-modules" ,extra-cmake-modules)
+     `(("dbus" ,dbus)
+       ("extra-cmake-modules" ,extra-cmake-modules)
        ("inetutils" ,inetutils)
        ("qttools" ,qttools)
        ("xorg-server" ,xorg-server)))
@@ -508,13 +494,10 @@ Internet).")
              (setenv "HOME" (getcwd))
              (setenv "TMPDIR" (getcwd))
              #t))
-         (add-before 'check 'start-xorg-server
-           (lambda* (#:key inputs #:allow-other-keys)
-             ;; The test suite requires a running X server.
-             (system (string-append (assoc-ref inputs "xorg-server")
-                                    "/bin/Xvfb :1 &"))
-             (setenv "DISPLAY" ":1")
-             #t)))))
+         (replace 'check
+           (lambda _
+             (setenv "QT_QPA_PLATFORM" "offscreen")
+             (invoke "dbus-launch" "ctest" "."))))))
     (home-page "https://community.kde.org/Frameworks")
     (synopsis "Kconfiguration settings framework for Qt")
     (description "KConfig provides an advanced configuration system.
@@ -549,7 +532,7 @@ propagate their changes to their respective configuration files.")
 (define-public kcoreaddons
   (package
     (name "kcoreaddons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -558,7 +541,7 @@ propagate their changes to their respective configuration files.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "00s22jvbwav20cidnp8v9fgc6pqbp4wnqkb2spv18mjhg4pv3bqj"))))
+                "1n27786js8j8na7kgxirhmswxcz3qkfiqzfabqmmsd0jp4rx1s79"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -606,7 +589,7 @@ many more.")
 (define-public kdbusaddons
   (package
     (name "kdbusaddons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -615,7 +598,7 @@ many more.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1fnmrrffp3kfwyjfzqkzlizflpyqgzbjljb51ppmdypcq8wy9ibh"))
+                "1fvlspqc3w3y4p04gnqz6vrfvl93iwckfk16p608fz7yfgdmlzbf"))
               (patches (search-patches "kdbusaddons-kinit-file-name.patch"))))
     (build-system cmake-build-system)
     (native-inputs
@@ -651,7 +634,7 @@ as well as an API to create KDED modules.")
 (define-public kdnssd
   (package
     (name "kdnssd")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -660,7 +643,7 @@ as well as an API to create KDED modules.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1n61id2x1iianshg8g6fw389mqihz4h8sj9hnng7cdg4csh72ffr"))))
+                "00sqx2hyqd9yw4nwdl8kmbzm0v0szgqv4nz0q6bchv3hfbax6zk7"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -679,7 +662,7 @@ infrastructure.")
 (define-public kguiaddons
   (package
     (name "kguiaddons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -688,7 +671,7 @@ infrastructure.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1zkjd3l5pyvvilcc9lbdgqaxnpvh586yf0cndl90h3x89hy1d4xk"))))
+                "0lkqxsqdjmc7060pxi5j8gx15kmrb8450cpinzn89nzpdl7rj935"))))
     (build-system cmake-build-system)
     ;; TODO: Build packages for the Python bindings.  Ideally this will be
     ;; done for all versions of python guix supports.  Requires python,
@@ -717,7 +700,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.")
 (define-public ki18n
   (package
     (name "ki18n")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -726,7 +709,7 @@ interfaces in the areas of colors, fonts, text, images, keyboard input.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1i4rdrxann45zl6fkmfd1b96q52g0mpc5x19fx9h80crapkm8jjz"))))
+                "0drbyr2y44h1d88nbgxvp4ix46lin51r8vzhhnjhq2ydqy5za3p3"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("gettext" ,gettext-minimal)
@@ -760,7 +743,7 @@ translation scripting.")
 (define-public kidletime
   (package
     (name "kidletime")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -769,7 +752,7 @@ translation scripting.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1fd02anlmaa0hnnp5q1s9973m3asy56qppwq1va1g6ga3csv3wrv"))))
+                "1x0z0ipdizgv6jkklxp6maclx8f6ya2bv1q39hvxxnnmly8q3vjm"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -791,7 +774,7 @@ or user activity.")
   ;; plasma-framework which is tier 3.
   (package
     (name "kirigami")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -800,7 +783,7 @@ or user activity.")
                     "kirigami2-" version ".tar.xz"))
               (sha256
                (base32
-                "1wan9h7kvjzvyzfjfjd512lxiac5prhs493xjqwxgags6kxwglaz"))))
+                "0iny9br3vpakvv0bmgy0mmw2y10d4kqbahjpfa3726qai4gligp2"))))
     (properties `((upstream-name . "kirigami2")))
     (build-system cmake-build-system)
     (native-inputs
@@ -827,7 +810,7 @@ of applications that follow the Kirigami Human Interface Guidelines.")
 (define-public kitemmodels
   (package
     (name "kitemmodels")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -836,7 +819,7 @@ of applications that follow the Kirigami Human Interface Guidelines.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1frha301540js45mrxiw034m9b2rwsa56xphkqn6cm4jmn48qdjg"))))
+                "1s3wv75sbb4kpgz02cbm7smp8h6rk1ixv0gafbvz9514i9g4d760"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -886,7 +869,7 @@ model to observers
 (define-public kitemviews
   (package
     (name "kitemviews")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -895,7 +878,7 @@ model to observers
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1aj605q2p72w4rb9i0f2xb93bn5xfjq9sl5i4h6rqflcvvy7qpdp"))))
+                "1cw9i8xik287rvb12alpqsph902nhfmbn4cfjx5gj7k888n8k3mk"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -921,7 +904,7 @@ to flat and hierarchical lists.")
 (define-public kplotting
   (package
     (name "kplotting")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -930,7 +913,7 @@ to flat and hierarchical lists.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "13fzqqkyxs4ja6n5yb9lc5jx4qpsmrbsiihnwrgj3lhpzhlr91n0"))))
+                "02mab80jyfgdj8xwbwkm181cc5vpsmbn561242q7ayjgxdiszzw9"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -956,7 +939,7 @@ pixel units.")
 (define-public ksyntaxhighlighting
   (package
     (name "ksyntaxhighlighting")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -965,7 +948,7 @@ pixel units.")
                     "syntax-highlighting-" version ".tar.xz"))
               (sha256
                (base32
-                "17rkgzkfiz5dv0xr67na7ikqszgwjnf2gc11b2h47qdsr7pgx95v"))))
+                "022mpkbgc458qcn25pn3a3m2dzy6lq23r7fqbgp22jr6xalfi5hl"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1005,7 +988,7 @@ integration with a custom editor as well as a ready-to-use
 (define-public kwayland
   (package
     (name "kwayland")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1014,7 +997,7 @@ integration with a custom editor as well as a ready-to-use
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0d95l2i3j1xxkc15n57w4rhf3di02zna4zzn4gap9qdhfxlfbqi6"))))
+                "0y1710l68qlf37zy26nyn25r50a00mrm5cnwgfs9f40s749amigf"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1044,7 +1027,7 @@ represented by a QPoint or a QSize.")
 (define-public kwidgetsaddons
   (package
     (name "kwidgetsaddons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1053,7 +1036,7 @@ represented by a QPoint or a QSize.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1frgqz9njbc81pfy6gl6p0hyh1977lg31ynrx5wy7lg7fwaxwl92"))))
+                "01qxklhigfazhma0f6m1fkcbh9waxpvzpz6y2jlflvgbw2db82gh"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1091,7 +1074,7 @@ configuration pages, message boxes, and password requests.")
 (define-public kwindowsystem
   (package
     (name "kwindowsystem")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1100,7 +1083,7 @@ configuration pages, message boxes, and password requests.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "175rzwrjndhawyy4x11lbihdr1r9gwxmxjpbz4x06hlz4g50wffp"))))
+                "1n9h4gg5ih29avvcpplqfy7nq58xx6jv6a04m1wkjr1rzn4dyfnb"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1152,7 +1135,7 @@ lower level classes for interaction with the X Windowing System.")
 (define-public modemmanager-qt
   (package
     (name "modemmanager-qt")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1161,7 +1144,7 @@ lower level classes for interaction with the X Windowing System.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1wf3v552vbr4kh2d770zn3yn0q3bqjqbfrvnf813mnld7961m7p2"))))
+                "0n54gh83b6d42azv40km7j223qb2f4f9ng23xvvawzc7l2ksm350"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1190,7 +1173,7 @@ messages.")
 (define-public networkmanager-qt
   (package
     (name "networkmanager-qt")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1199,7 +1182,7 @@ messages.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "16pnd52m9srcb2ml3vc3kd9k1yak5rq09yci39qp7z5jbdy7jk2z"))))
+                "0bh5li6r7r3nws5zj0hp4iy4xhiyh7rszzwpp6ag93vz5g5fsl9y"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1229,7 +1212,7 @@ which are used in DBus communication.")
 (define-public oxygen-icons
   (package
     (name "oxygen-icons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1238,7 +1221,7 @@ which are used in DBus communication.")
                     name "5" "-" version ".tar.xz"))
               (sha256
                (base32
-                "0llx06sr36cd6vgkgm3jw6k4cv1cfx3r6x6lmb477wpahis0n75g"))))
+                "1sdd8ygkyl4d1mwrachcf0ahpikkby3xhdyz212xj9qmhmsgwa46"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1254,7 +1237,7 @@ which are used in DBus communication.")
 (define-public prison
   (package
     (name "prison")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -1262,7 +1245,7 @@ which are used in DBus communication.")
                            (version-major+minor version) "/"
                            name "-" version ".tar.xz"))
        (sha256
-        (base32 "0dppz9x6k84sl0aiyjlh3xigqgda64r8mij3bzxcdkv2wbc4ld9d"))))
+        (base32 "1z7gymk4hkwaa0ni1454ndvpm2lwqyyfbih38h0lfb8lrswnv3kb"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1279,7 +1262,7 @@ provides uniform access to generation of barcodes with data.")
 (define-public qqc2-desktop-style
   (package
     (name "qqc2-desktop-style")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1288,7 +1271,7 @@ provides uniform access to generation of barcodes with data.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1vbms7b8x1y7yh8im8dv1q3wwl3j2x4r47yqg86f28grw2r2n2zj"))))
+                "1shw3c6cr5xanzyl5zv3isyhvzi20zn3xf7m963z1qn8ypaz1by8"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1313,7 +1296,7 @@ feel.")
 (define-public solid
   (package
     (name "solid")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1322,7 +1305,7 @@ feel.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1p7rdmf2f8520xc7zp7wxlcizyyjfxwq5mf95qsfpwc4dl0c43gp"))))
+                "0hmh9hndfs1ikaja07ddag7jr8804q4g6p74rhqsrfk2sjz0pmr9"))))
     (build-system cmake-build-system)
     (arguments
      `(#:phases
@@ -1352,7 +1335,7 @@ system.")
 (define-public sonnet
   (package
     (name "sonnet")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1361,7 +1344,7 @@ system.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0m5pmka1hwjsg3c3qvx087z3fjrfw0ayk7ylgjls5iwd39kkl1b3"))))
+                "0ccz0gbypzdndaxrfkjhry90jjdh5a56pm4j41z835q96w6piclz"))))
     (build-system cmake-build-system)
     (arguments
      `(#:phases
@@ -1389,7 +1372,7 @@ ASpell and HUNSPELL.")
 (define-public threadweaver
   (package
     (name "threadweaver")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1398,7 +1381,7 @@ ASpell and HUNSPELL.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "099bs429p71dzrqy25z61rvn48w3b73p7yag4q69jnxcpj0qcyz7"))))
+                "011k2pm0wr60sxnydicnchnarx4r6qja0w6iih3jfkw733qm6bxp"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1419,7 +1402,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way."
 (define-public kactivities
   (package
     (name "kactivities")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1428,7 +1411,7 @@ uses a job-based interface to queue tasks and execute them in an efficient way."
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "117f3zrdbs0pa10wn7vy691n02m01h6x4pm8m1q3f4pjm0k4kqim"))))
+                "0ipq71g6g7q6yncvbiabwn5kg2280k8ssibbbf6jyh2lg09dmjil"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1464,7 +1447,7 @@ with other frameworks.")
 (define-public kauth
   (package
     (name "kauth")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1473,7 +1456,7 @@ with other frameworks.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0qg3zwg3kfx2snmvsw4ixr0qds7bd7992dxggvi9dcny7dm9q0n8"))))
+                "1ciabazig77rpfksvdlmixj2sa2qnasq13nwvjn3xksnajfm4p2h"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("dbus" ,dbus)
@@ -1511,7 +1494,7 @@ utilities.")
 (define-public kcompletion
   (package
     (name "kcompletion")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1520,7 +1503,7 @@ utilities.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "16br6wnqzndk8v41im23h2ww4hypi2i1qfg6m9c49mpxflgmspbi"))))
+                "0sgg09l97amnng0ddxyjpk535097f87bmn60hjqrmpsqb0n3a460"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1547,7 +1530,7 @@ integrated it into your application's other widgets.")
 (define-public kcrash
   (package
     (name "kcrash")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1556,7 +1539,7 @@ integrated it into your application's other widgets.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0xmr9rrl0xahpnq1rw4bbar1nbr21x2bk4hhv79la6dsg9ha25b3"))))
+                "0wlrlzwdi9dpxkky9sadmbgw0rjisxhym9hr8gzydd2y8q4cr8a7"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1582,7 +1565,7 @@ application crashes.")
 (define-public kdoctools
   (package
     (name "kdoctools")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1591,7 +1574,7 @@ application crashes.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1dmpk453s71ls0q8hgpqqd5dcr7zlimf5wykizcy2wn7p77gzsgl"))))
+                "0xbmdqlvyw9s2g8kwn1wmvz09pn4vs386ibm1p92wdnpspp5did6"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1639,7 +1622,7 @@ from DocBook files.")
 (define-public kfilemetadata
   (package
     (name "kfilemetadata")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1648,7 +1631,7 @@ from DocBook files.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "045k1mgn8kg0qfsr5sl1499nzhzmbcvrqc205pmq6sh4r14nvk80"))))
+                "1hl61y15nqr5h5k4jqfz9bjj4gw6wdaiacxaslcwzn0sg4xyavab"))))
     (build-system cmake-build-system)
     (arguments
      `(#:phases
@@ -1691,7 +1674,7 @@ by applications to write metadata.")
 (define-public kimageformats
   (package
     (name "kimageformats")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1700,7 +1683,7 @@ by applications to write metadata.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1q7019gbk59fwampna1ayjvw016c0q79hmldpaqh3xa9sh082wy4"))))
+                "0xfzpzaqgdncwxvg27qb0ryqi78nbsi0xcsg9cjmgspfx5mlgi15"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1745,7 +1728,7 @@ formats.")
 (define-public kjobwidgets
   (package
     (name "kjobwidgets")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1754,7 +1737,7 @@ formats.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "04i5cvbxii7n0jr3ai1dh44miqbdkxb6an5w8s7qvkv0xmkml35g"))))
+                "0d3jxabjlf2s4p34pzrpfsg4xp9s8qd7dmg50yxl59dijd42xgxq"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1773,7 +1756,7 @@ asynchronous jobs.")
 (define-public knotifications
   (package
     (name "knotifications")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1782,7 +1765,7 @@ asynchronous jobs.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "10481j2irlqhqd16xi412xbglnyjl0ndanlv9s0d3fxirs95zdd9"))))
+                "1agglvwaf0wh3fcs0ww3jxn900ych4dsvbaylrx4qip6girfmiyn"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -1819,7 +1802,7 @@ covers feedback and persistent events.")
 (define-public kpackage
   (package
     (name "kpackage")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1828,7 +1811,7 @@ covers feedback and persistent events.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1xbfjwxb4gff8gg0hs5m9s0jcnzqk27rs2jr71g5ckhvs5psnkcd"))
+                "1s1n7r3j7l4kvd85dgssaaz70dd2w8vp34kwg49ak58cdai01vzb"))
               ;; Default to: external paths/symlinks can be followed by a
               ;; package
               (patches (search-patches "kpackage-allow-external-paths.patch"))))
@@ -1880,7 +1863,7 @@ were traditional plugins.")
 (define-public kpty
   (package
     (name "kpty")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1889,7 +1872,7 @@ were traditional plugins.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1pnj07079l6gkz6171fcvljh0dcdy9s77p1q0l9nnkknjbr102pg"))))
+                "04sj612x15311yk2jmr3ak430syp5p59w559670sd18ih99mf8m3"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -1917,7 +1900,7 @@ and communicating with them using a pty.")
 (define-public kunitconversion
   (package
     (name "kunitconversion")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1926,7 +1909,7 @@ and communicating with them using a pty.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "11jnqz218rga3f4ppf1d927c7qhh2qpghwjpsrnrxdkz5nrvnf79"))))
+                "0lxrydnjlilfm92aqrpd76dk8yfprgnb7nr66dwmbdmqz7znbl8h"))))
     (build-system cmake-build-system)
     (arguments
      `(#:phases
@@ -1960,7 +1943,7 @@ gallons).")
 (define-public baloo
   (package
     (name "baloo")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1969,7 +1952,7 @@ gallons).")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0xj12v0k58sr3snxyj4vx7dqhinrvk6qm0ikymscqgbmw9ijwxph"))))
+                "0wv8zi03plr279v9p923rwkx2kwhbpd6xlzyqi4v14vhcrmapg1c"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kcoreaddons" ,kcoreaddons)
@@ -2025,7 +2008,7 @@ maintaining an index of the contents of your files.")
 (define-public kactivities-stats
   (package
     (name "kactivities-stats")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2034,7 +2017,7 @@ maintaining an index of the contents of your files.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "129z2m5330j0l1nw8g3qjib60xmx54c6d2g9vnp4w8z0agnihs5f"))))
+                "1ns7f110a5vwabb33b1lnpa85kk5radf87bxm1gw4gzglsv7747d"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2055,7 +2038,7 @@ by which applications, and what documents have been linked to which activity.")
 (define-public kbookmarks
   (package
     (name "kbookmarks")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2064,7 +2047,7 @@ by which applications, and what documents have been linked to which activity.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0clmfdcc1fc98q3vbfjf8x140a6df88ixhz0mny3dpv1wcr5cz53"))))
+                "1w4rqnzyars1pxam3nym1qily3ihd2j8cpkq8aha70nbj0dj3ckw"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kwidgetsaddons" ,kwidgetsaddons)))
@@ -2098,7 +2081,7 @@ using the XBEL format.")
 (define-public kcmutils
   (package
     (name "kcmutils")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2107,7 +2090,7 @@ using the XBEL format.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0xv899p9f0hj6hd089mhn910qn66bihzpaa11ikrhbimckw8g19q"))))
+                "0a5jz9m27nyl1vchp68170j9v5z4csyv43vpnfs09l6wk9ggdcwh"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kconfigwidgets" ,kconfigwidgets)
@@ -2151,7 +2134,7 @@ KCModules can be created with the KConfigWidgets framework.")
 (define-public kconfigwidgets
   (package
     (name "kconfigwidgets")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2160,7 +2143,7 @@ KCModules can be created with the KConfigWidgets framework.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1nqcrqr67m3kvq2r83x45zcdghk12bas9fp0s43s68imrhy5xikz"))))
+                "1l3hh7qgnz7mnn55abv03pq7zal9dgcw5gnhfr747wknd4h90w31"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kauth" ,kauth)
@@ -2201,7 +2184,7 @@ their settings.")
 (define-public kdeclarative
   (package
     (name "kdeclarative")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2210,7 +2193,7 @@ their settings.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0kgawb8wfx4snk2ckwxj0hmpgcvq3k1zpsxqdawi4cmsy4bxzfs9"))))
+                "0ankjqrlpnj3c9sjnv5p8w279zizkl5ps3i5zw16hg44v6hdmcj0"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kconfig" ,kconfig)
@@ -2264,7 +2247,7 @@ that offer bindings to some of the Frameworks.")
 (define-public kded
   (package
     (name "kded")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2273,7 +2256,7 @@ that offer bindings to some of the Frameworks.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1l6hs3spbs3618jwg3n7r3hrrkqxmmd43f0km8849x4641p72zyc"))))
+                "131hvxpqvkyh1sfb1j19jjzy7fyy6xisvpmx12lw1pvks0cnrqgn"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2297,7 +2280,7 @@ started on demand.")
 (define-public kdesignerplugin
   (package
     (name "kdesignerplugin")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2306,7 +2289,7 @@ started on demand.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0hj4ng0i22rvw4kl0irhqhww3kvn4c0pncn38w1j5vim4gxv0xcd"))))
+                "0hlywnzd3d6bvhib1xqiqx39m7k8g16wsj102f7awd5gw3xrz8ga"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2348,7 +2331,7 @@ ini-style description files.")
 (define-public kdesu
   (package
     (name "kdesu")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2357,7 +2340,7 @@ ini-style description files.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1gwvby51qqbkrs2vjpnplxr6m6xa5ddfdjs1iygh8kpqsh8a765k"))))
+                "1qhw1hmq2b6rkyibidmg532llv31vkhmp0a7j2myzi40ydbx1lar"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kpty" ,kpty)))
@@ -2379,7 +2362,7 @@ with su and ssh respectively.")
 (define-public kdewebkit
   (package
     (name "kdewebkit")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2388,7 +2371,7 @@ with su and ssh respectively.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "05idyw94ayjh7qdia9pnjmx29r5lsch421kv8h5ivr7ixcbrgk6n"))))
+                "0prl9751a8nv7qhg7fv8qygq0llh71w2p25sldl3zif44340jnhf"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2411,7 +2394,7 @@ engine WebKit via QtWebKit.")
 (define-public kemoticons
   (package
     (name "kemoticons")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2420,7 +2403,7 @@ engine WebKit via QtWebKit.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0mz9hkhnprjbrfq54mqcvj8w87h025785m1bas80brsqzvni5krn"))))
+                "0ypcffpp0m75qwam386q6pyfbsij16y2vgpkn38li6ypxlxsvx2v"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kservice" ,kservice)))
@@ -2451,7 +2434,7 @@ emoticons coming from different providers.")
 (define-public kglobalaccel
   (package
     (name "kglobalaccel")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2460,7 +2443,7 @@ emoticons coming from different providers.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1fk7wazfwr7smqiym3phm5yvw6cmiczag52y1vad8fgb3izd6zhl"))))
+                "10gl8prc1n0si52cmiglkz8dx79dylmxrh5mjpmyy5yy16chs1s1"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2495,7 +2478,7 @@ window does not need focus for them to be activated.")
 (define-public kiconthemes
   (package
     (name "kiconthemes")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2504,7 +2487,7 @@ window does not need focus for them to be activated.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1f7pk6smi2f0mm7jkrw5ymmkhd9gi8vnmppyblp1v3pvmy571c2m"))))
+                "0hc3a6ax3yizpbvklxw3pm0r6j0r5jqx2ffbz1980g21lcgshd7g"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -2542,7 +2525,7 @@ in applications using the KDE Frameworks.")
 (define-public kinit
   (package
     (name "kinit")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2551,7 +2534,7 @@ in applications using the KDE Frameworks.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1rq9b59gdgcpvwd694l8h55sqahpdaky0n7ag5psjlfn5myf1d95"))
+                "0pmr6ckysdqpni49i9jgapsk88jfbrnlfybpcp3v51kl2nkwm0i9"))
               ;; Use the store paths for other packages and dynamically loaded
               ;; libs
               (patches (search-patches "kinit-kdeinit-extra_libs.patch"
@@ -2610,7 +2593,7 @@ makes starting KDE applications faster and reduces memory consumption.")
 (define-public kio
   (package
     (name "kio")
-    (version "5.49.0")
+    (version "5.54.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2619,7 +2602,7 @@ makes starting KDE applications faster and reduces memory consumption.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0rrsg3g1b204cdp58vxd5dig1ggwyvk1382p1c86vn6w8qbrq27k"))
+                "11wdsq87w1ddkrm0mpik2qf0c0k897f1rflszfrrwkplfb0z63xp"))
               (patches (search-patches "kio-search-smbd-on-PATH.patch"))))
     (build-system cmake-build-system)
     (propagated-inputs
@@ -2642,6 +2625,7 @@ makes starting KDE applications faster and reduces memory consumption.")
        ("kauth" ,kauth)
        ("kcodecs" ,kcodecs)
        ("kconfigwidgets" ,kconfigwidgets)
+       ("kcrash" ,kcrash)
        ("kdbusaddons" ,kdbusaddons)
        ("kdoctools" ,kdoctools)
        ("kiconthemes" ,kiconthemes)
@@ -2702,7 +2686,7 @@ KIO enabled infrastructure.")
 (define-public knewstuff
   (package
     (name "knewstuff")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2711,7 +2695,7 @@ KIO enabled infrastructure.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1vhcl2z9rcqg8390l1cwn3yyi1n17pn6mn8fsplp25qhzimb8bmk"))))
+                "1l3ibadjvaqqjsb1lhkf6jkzy80dk15fgid125bqk4amwsyygnd3"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("attica" ,attica)
@@ -2758,7 +2742,7 @@ specification.")
 (define-public knotifyconfig
   (package
     (name "knotifyconfig")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2767,7 +2751,7 @@ specification.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "09v4aq5x98sqg2awhw0n0y0rnjkr77kbf51xij0fiykd4llp9lfa"))))
+                "1ibxqi0y43qgjj4nikxwfppmda9xjmz63c5fml8c4w5d9mdag3if"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2800,7 +2784,7 @@ notifications which can be embedded in your application.")
 (define-public kparts
   (package
     (name "kparts")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2809,7 +2793,7 @@ notifications which can be embedded in your application.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0zdz0byj0gsbgb007y8x37w8yf1gkw6dsp2s9bbdc4w6h9ipdj2k"))))
+                "0y2dr286hb2w4r7ifq39vd7ajsalqyh9d91dm19b2rpgdmvgxai6"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kio" ,kio)
@@ -2817,8 +2801,7 @@ notifications which can be embedded in your application.")
        ("kxmlgui" ,kxmlgui)))
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
-       ("shared-mime-info" ,shared-mime-info)
-       ))
+       ("shared-mime-info" ,shared-mime-info)))
     (inputs
      `(("kauth" ,kauth)
        ("kbookmarks" ,kbookmarks)
@@ -2853,7 +2836,7 @@ widgets with a user-interface defined in terms of actions.")
 (define-public kpeople
   (package
     (name "kpeople")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2862,7 +2845,7 @@ widgets with a user-interface defined in terms of actions.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0i5pd1d2jphsvpc3dpdw28dsdal1qrnnrx3k6qx4wax3f8ph5khv"))))
+                "0sl8wcj7w9vgczcv8mfvjlnghidyadbh1qsiv0pj63ywl7xgr1hx"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -2896,7 +2879,7 @@ to easily extend the contacts collection.")
 (define-public krunner
   (package
     (name "krunner")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2905,7 +2888,7 @@ to easily extend the contacts collection.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "02l5gch9hpag1q5ixnb541g7m9lx25pbggldpa8zykp63apyca19"))))
+                "06y592v32926wq9iaypryj0173ca05vv0p5rrs4n77kwhkl0zq0v"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("plasma-framework" ,plasma-framework)))
@@ -2966,7 +2949,7 @@ typed.")
 (define-public kservice
   (package
     (name "kservice")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -2975,7 +2958,7 @@ typed.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1wwb6c6m8f3b16p47adkc05rrlszvvym7ckks5xp08s58pk1dm8z"))))
+                "10qmrqyfjhf5nzjailgmb86nq62ffrmiddk3880mh49fwxs4l3qx"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kconfig" ,kconfig)
@@ -3025,7 +3008,7 @@ types or handled by application specific code.")
 (define-public ktexteditor
   (package
     (name "ktexteditor")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3034,7 +3017,7 @@ types or handled by application specific code.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "14iss8svx49vav0h2kg8vhv8g5hg4ky30s7049csfwz7xhp7jmcj"))))
+                "12yywvv82lmqmx89j1qxj45an49vx34brifxs9rpy3nxyh9c3vzy"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kparts" ,kparts)))
@@ -3105,7 +3088,7 @@ library.")
 (define-public ktextwidgets
   (package
     (name "ktextwidgets")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3114,7 +3097,7 @@ library.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "14gclshmpwmfwkp2hzlnf823pjjmknd9q0gdclsh3yy268c2rsw1"))))
+                "154j3an7x787l44hw1fmksm3h6kziyaw4l61zw9mas24z3d86hl5"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("ki18n" ,ki18n)
@@ -3152,7 +3135,7 @@ It supports rich text as well as plain text.")
 (define-public kwallet
   (package
     (name "kwallet")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3161,7 +3144,7 @@ It supports rich text as well as plain text.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "13bmks9jb3yhp6clv25qkqkrvbhfyk9z16laxsv79jdd82lxgn1z"))))
+                "0hyipka97g2djk43x8pqbjvrgswsp8kph6za0s5dl4napfikq8k2"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)))
@@ -3194,7 +3177,7 @@ the passwords on KDE work spaces.")
 (define-public kxmlgui
   (package
     (name "kxmlgui")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3203,7 +3186,7 @@ the passwords on KDE work spaces.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0wsgs5ya3wnc5cryi1r9i30sq8dnnhh15p02skdjlhwjfvdhxmfa"))))
+                "01napbq81mcp9ngyl26an52l6ndsgrhzhy2mfd8jrbil2sbrcxq7"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kconfig" ,kconfig)
@@ -3246,7 +3229,7 @@ descriptions for integrating actions from plugins.")
 (define-public kxmlrpcclient
   (package
     (name "kxmlrpcclient")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3255,7 +3238,7 @@ descriptions for integrating actions from plugins.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "0l4jnvn7s77jkvd2z44mz24mfzcw499plms79j21pjryc88drh06"))))
+                "199syc5wl8myc4vcvbnw4a8mlfkb2gcmgs57p8w7akp7mz6l75y6"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kio" ,kio)))
@@ -3289,7 +3272,7 @@ setUrl, setUserAgent and call.")
 (define-public plasma-framework
   (package
     (name "plasma-framework")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3298,7 +3281,7 @@ setUrl, setUserAgent and call.")
                     name "-" version ".tar.xz"))
               (sha256
                (base32
-                "1yrccbkdpnfbgn7fzpmzzxm5c7fhkv1vqygq1f96r30fia0cj5jv"))))
+                "1933i8irn76ilz3nychbnhy1bsc39iscn3qrab0lwmshfmw8c4zj"))))
     (build-system cmake-build-system)
     (propagated-inputs
      `(("kpackage" ,kpackage)
@@ -3386,7 +3369,7 @@ script engines.")
 (define-public kde-frameworkintegration
   (package
     (name "kde-frameworkintegration")
-    (version "5.49.0")
+    (version "5.54.0")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -3395,7 +3378,7 @@ script engines.")
                     "frameworkintegration-" version ".tar.xz"))
               (sha256
                (base32
-                "1ni4jrny630zf3zwmqbm8z7dqgiar58992lylfv7kspdg5crcgfx"))))
+                "1rzi3ydw7hjhg4vbsfan7zgaa2a2bmp7mph95h2kidf8x816qv2d"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3443,7 +3426,7 @@ workspace.")
 (define-public kdelibs4support
   (package
     (name "kdelibs4support")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3452,7 +3435,7 @@ workspace.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "1cz70c77l66lbw4fbgmfbq1fldybqxsiay2pg9risgqp3ra8wahi"))))
+        (base32 "02kklfcjsll4pf4rfll7jrr7jpcwd57954ypjjhn3xgr6p0w0hdm"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("dbus" ,dbus)
@@ -3559,7 +3542,7 @@ http://community.kde.org/Frameworks/Porting_Notes should help with this.")
 (define-public khtml
   (package
     (name "khtml")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3568,7 +3551,7 @@ http://community.kde.org/Frameworks/Porting_Notes should help with this.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "0k9m2pgq64grmgc6ywpzfnn65h8wfkkiwjbmz2mwbf2yi9c1ky64"))))
+        (base32 "17d8cim4ph7nxc5gkidhxc659yn9a7dqvnrihx9sj1cy01qnc7da"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3618,7 +3601,7 @@ technology and using KJS for JavaScript support.")
 (define-public kjs
   (package
     (name "kjs")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3627,7 +3610,7 @@ technology and using KJS for JavaScript support.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "057ikyi4wffjvxdyk08hmj7h8vmbwbcxv98apmjzgsd611zvx5p0"))))
+        (base32 "0bidbvbwbrbwwm0drw6l43vgmsp50c946jjq7pgnq1gf7mhscwcy"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3651,7 +3634,7 @@ support.")
 (define-public kjsembed
   (package
     (name "kjsembed")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3660,7 +3643,7 @@ support.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "0qddjkfm6f0f5dynqvi3l23mgyfdbk4xzg967sj3a2qlq423ah0m"))))
+        (base32 "1pjpk8ysrnh78infq99i0wrf78h8h7hbfnr1m7agzffhbqa671z8"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3680,7 +3663,7 @@ QObjects, so you can script your applications.")
 (define-public kmediaplayer
   (package
     (name "kmediaplayer")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3689,7 +3672,7 @@ QObjects, so you can script your applications.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "0hbx48ivj4i96yagd9n9vd22ycsljrvijm6nfms4x7z7jr49flrx"))))
+        (base32 "0qalqqkn2yvxgr45l7zm36bcpxwbgn8ngxsvyb5cxfaalwr0mkyf"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
@@ -3726,7 +3709,7 @@ KParts instead.")
 (define-public kross
   (package
     (name "kross")
-    (version "5.49.0")
+    (version "5.54.0")
     (source
      (origin
        (method url-fetch)
@@ -3735,7 +3718,7 @@ KParts instead.")
              (version-major+minor version) "/portingAids/"
              name "-" version ".tar.xz"))
        (sha256
-        (base32 "194zcf499fkwk3wcs3kc3l0fi9h8gn5yqh6gxrgiyn6iyy9a4qdz"))))
+        (base32 "18ij9339khskla4r0afl0n6x4pd157y1l5bk2ldb9anpck3p71kd"))))
     (build-system cmake-build-system)
     (native-inputs
      `(("extra-cmake-modules" ,extra-cmake-modules)
diff --git a/gnu/packages/kde-plasma.scm b/gnu/packages/kde-plasma.scm
new file mode 100644
index 0000000000..8d9d0b7660
--- /dev/null
+++ b/gnu/packages/kde-plasma.scm
@@ -0,0 +1,228 @@
+;;; GNU Guix --- Functional package management for GNU
+;;; Copyright © 2016 Thomas Danckaert <post@thomasdanckaert.be>
+;;; Copyright © 2018 Meiyo Peng <meiyo.peng@gmail.com>
+;;; Copyright © 2019 Marius Bakke <mbakke@fastmail.com>
+;;; Copyright © 2017 Hartmut Goebel <h.goebel@crazy-compilers.com>
+;;;
+;;; This file is part of GNU Guix.
+;;;
+;;; GNU Guix is free software; you can redistribute it and/or modify it
+;;; under the terms of the GNU General Public License as published by
+;;; the Free Software Foundation; either version 3 of the License, or (at
+;;; your option) any later version.
+;;;
+;;; GNU Guix is distributed in the hope that it will be useful, but
+;;; WITHOUT ANY WARRANTY; without even the implied warranty of
+;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;;; GNU General Public License for more details.
+;;;
+;;; You should have received a copy of the GNU General Public License
+;;; along with GNU Guix.  If not, see <http://www.gnu.org/licenses/>.
+
+(define-module (gnu packages kde-plasma)
+  #:use-module (guix packages)
+  #:use-module (guix download)
+  #:use-module ((guix licenses) #:prefix license:)
+  #:use-module (guix build-system cmake)
+  #:use-module (gnu packages compression)
+  #:use-module (gnu packages freedesktop)
+  #:use-module (gnu packages glib)
+  #:use-module (gnu packages kde-frameworks)
+  #:use-module (gnu packages linux)
+  #:use-module (gnu packages pkg-config)
+  #:use-module (gnu packages qt)
+  #:use-module (gnu packages xorg))
+
+(define-public kdecoration
+  (package
+    (name "kdecoration")
+    (version "5.14.5")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://kde/stable/plasma/" version
+                                  "/kdecoration-" version ".tar.xz"))
+              (sha256
+               (base32
+                "115pli0qpa8lx0jasg1886fcg7gb2kk8v6k8r8l8c820l97sq7in"))))
+    (build-system cmake-build-system)
+    (native-inputs
+     `(("extra-cmake-modules" ,extra-cmake-modules)))
+    (inputs
+     `(("ki18n" ,ki18n)
+       ("qtbase" ,qtbase)))
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'check-setup
+           (lambda _ (setenv "QT_QPA_PLATFORM" "offscreen") #t)))))
+    (home-page "https://cgit.kde.org/kdecoration.git")
+    (synopsis "Plugin based library to create window decorations")
+    (description "KDecoration is a library to create window decorations.
+These window decorations can be used by for example an X11 based window
+manager which re-parents a Client window to a window decoration frame.")
+    (license license:lgpl3+)))
+
+(define-public kscreenlocker
+  (package
+    (name "kscreenlocker")
+    (version "5.14.5")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "mirror://kde/stable/plasma/" version
+                                  "/kscreenlocker-" version ".tar.xz"))
+              (sha256
+               (base32
+                "16amr7pz0k6w5vkk1dwn2qi3s1mln0jypwmjazqq2lbwimn8k56m"))))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'check-setup
+           (lambda* (#:key inputs outputs #:allow-other-keys)
+             (system (string-append (assoc-ref inputs "xorg-server")
+                                   "/bin/Xvfb :1 -screen 0 640x480x24 &"))
+             (setenv "DISPLAY" ":1")
+             #t))
+         (delete 'check)
+         ;; Tests use the installed library and require a DBus session.
+         (add-after 'install 'check
+           (lambda _
+             (setenv "CTEST_OUTPUT_ON_FAILURE" "1")
+             (invoke "dbus-launch" "ctest" "."))))))
+    (native-inputs
+     `(("extra-cmake-modules" ,extra-cmake-modules)
+       ("pkg-config" ,pkg-config)
+
+       ;; For tests.
+       ("dbus" ,dbus)
+       ("xorg-server" ,xorg-server)))
+    (inputs
+     `(("kcmutils" ,kcmutils)
+       ("kcrash" ,kcrash)
+       ("kdeclarative" ,kdeclarative)
+       ("kglobalaccel" ,kglobalaccel)
+       ("ki18n" ,ki18n)
+       ("kidletime" ,kidletime)
+       ("knotifications" ,knotifications)
+       ("ktextwidgets" ,ktextwidgets)
+       ("kwayland" ,kwayland)
+       ("kwindowsystem" ,kwindowsystem)
+       ("kxmlgui" ,kxmlgui)
+       ("libseccomp" ,libseccomp) ;for sandboxing the look'n'feel package
+       ("libxcursor" ,libxcursor) ;missing in CMakeList.txt
+       ("libxi" ,libxi)           ;XInput, required for grabbing XInput2 devices
+       ("linux-pam" ,linux-pam)
+       ("logind" ,elogind)        ;optional loginctl support
+       ("qtbase" ,qtbase)
+       ("qtdeclarative" ,qtdeclarative)
+       ("qtx11extras" ,qtx11extras)
+       ("solid" ,solid)
+       ("wayland" ,wayland)
+       ("xcb-util-keysyms" ,xcb-util-keysyms)))
+    (home-page "https://cgit.kde.org/kscreenlocker.git")
+    (synopsis "Screen locking library")
+    (description
+     "@code{kscreenlocker} is a library for creating secure lock screens.")
+    (license license:gpl2+)))
+
+(define-public libkscreen
+  (package
+    (name "libkscreen")
+    (version "5.14.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://kde/stable/plasma/" version "/"
+                           name "-" version ".tar.xz"))
+       (sha256
+        (base32 "1vyaml5ap9siw9idiny92li2bykd0nwjsmwmg0c7ad912j4g1s7y"))))
+    (build-system cmake-build-system)
+    (native-inputs
+     `(("extra-cmake-modules" ,extra-cmake-modules)
+       ;; For testing.
+       ("dbus" ,dbus)))
+    (inputs
+     `(("kwayland" ,kwayland)
+       ("libxrandr" ,libxrandr)
+       ("qtbase" ,qtbase)
+       ("qtx11extras" ,qtx11extras)))
+    (arguments
+     '(#:tests? #f         ; FIXME: 55% tests passed, 5 tests failed out of 11
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'pre-check
+           (lambda _
+             ;; For the missing '/etc/machine-id'.
+             (setenv "DBUS_FATAL_WARNINGS" "0")
+             ;; Run the tests offscreen.
+             (setenv "QT_QPA_PLATFORM" "offscreen")
+             #t)))))
+    (home-page "https://community.kde.org/Solid/Projects/ScreenManagement")
+    (synopsis "KDE's screen management software")
+    (description "KScreen is the new screen management software for KDE Plasma
+Workspaces which tries to be as magic and automatic as possible for users with
+basic needs and easy to configure for those who want special setups.")
+    (license license:gpl2+)))
+
+(define-public libksysguard
+  (package
+    (name "libksysguard")
+    (version "5.14.5")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (string-append "mirror://kde//stable/plasma/" version
+                           "/libksysguard-" version ".tar.xz"))
+       (sha256
+        (base32
+         "11nz0g7dqvpvgsv0a7sai445vgfsfi25plj7jb1i46n7zf8i8mya"))))
+    (native-inputs
+     `(("extra-cmake-modules" ,extra-cmake-modules)
+       ("pkg-config" ,pkg-config)))
+    (inputs
+     `(("kconfigwidgets" ,kconfigwidgets)
+       ("kiconthemes" ,kiconthemes)
+       ("kwindowsystem" ,kwindowsystem)
+       ("ki18n" ,ki18n)
+       ("kauth" ,kauth)
+       ("kcompletion" ,kcompletion)
+       ("kconfig" ,kconfig)
+       ("kcoreaddons" ,kcoreaddons)
+       ("kglobalaccel" ,kglobalaccel)
+       ("kio" ,kio)
+       ("kwidgetsaddons" ,kwidgetsaddons)
+       ("kservice" ,kservice)
+       ("qtbase" ,qtbase)
+       ("qtscript" ,qtscript)
+       ("qtwebkit" ,qtwebkit)
+       ("qtx11extras" ,qtx11extras)
+       ("plasma" ,plasma-framework)
+       ("zlib" ,zlib)))
+    (build-system cmake-build-system)
+    (arguments
+     `(#:configure-flags
+       `(,(string-append "-DKDE_INSTALL_DATADIR="
+                         (assoc-ref %outputs "out") "/share"))
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-cmakelists
+           (lambda _
+             ;; TODO: Verify: This should no longer be necessary, since
+             ;; KF5AuthConfig.cmake.in contains this already.
+             (substitute* "processcore/CMakeLists.txt"
+               (("KAUTH_HELPER_INSTALL_DIR") "KDE_INSTALL_LIBEXECDIR"))))
+         (add-before 'check 'check-setup
+           (lambda _
+             ;; make Qt render "offscreen", required for tests
+             (setenv "QT_QPA_PLATFORM" "offscreen")))
+         (replace 'check
+           (lambda _
+             ;; TODO: Fix this failing test-case
+             (invoke "ctest" "-E" "processtest"))))))
+    (home-page "https://www.kde.org/info/plasma-5.13.4.php")
+    (synopsis "Network enabled task and system monitoring")
+    (description "KSysGuard can obtain information on system load and
+manage running processes.  It obtains this information by interacting
+with a ksysguardd daemon, which may also run on a remote system.")
+    (license license:gpl3+)))
+
diff --git a/gnu/packages/kde.scm b/gnu/packages/kde.scm
index 5946ba0b52..23078d00a0 100644
--- a/gnu/packages/kde.scm
+++ b/gnu/packages/kde.scm
@@ -36,11 +36,11 @@
   #:use-module (gnu packages gettext)
   #:use-module (gnu packages ghostscript)
   #:use-module (gnu packages gl)
-  #:use-module (gnu packages glib)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages graphics)
   #:use-module (gnu packages image)
   #:use-module (gnu packages kde-frameworks)
+  #:use-module (gnu packages kde-plasma)
   #:use-module (gnu packages llvm)
   #:use-module (gnu packages maths)
   #:use-module (gnu packages pdf)
@@ -480,105 +480,6 @@ used in KDE development tools Kompare and KDevelop.")
     ;; source archive
     (license (list license:gpl2+ license:lgpl2.0+ license:bsd-3))))
 
-(define-public libkscreen
-  (package
-    (name "libkscreen")
-    (version "5.13.5")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "mirror://kde/stable/plasma/" version "/"
-                           name "-" version ".tar.xz"))
-       (sha256
-        (base32 "04719va15i66qn1xqx318v6risxhp8bfcnhxh9mqm5h9qx5c6c4k"))))
-    (build-system cmake-build-system)
-    (native-inputs
-     `(("extra-cmake-modules" ,extra-cmake-modules)
-       ;; For testing.
-       ("dbus" ,dbus)))
-    (inputs
-     `(("kwayland" ,kwayland)
-       ("libxrandr" ,libxrandr)
-       ("qtbase" ,qtbase)
-       ("qtx11extras" ,qtx11extras)))
-    (arguments
-     '(#:tests? #f         ; FIXME: 55% tests passed, 5 tests failed out of 11
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'check 'pre-check
-           (lambda _
-             ;; For the missing '/etc/machine-id'.
-             (setenv "DBUS_FATAL_WARNINGS" "0")
-             ;; Run the tests offscreen.
-             (setenv "QT_QPA_PLATFORM" "offscreen")
-             #t)))))
-    (home-page "https://community.kde.org/Solid/Projects/ScreenManagement")
-    (synopsis "KDE's screen management software")
-    (description "KScreen is the new screen management software for KDE Plasma
-Workspaces which tries to be as magic and automatic as possible for users with
-basic needs and easy to configure for those who want special setups.")
-    (license license:gpl2+)))
-
-(define-public libksysguard
-  (package
-    (name "libksysguard")
-    (version "5.13.4")
-    (source
-     (origin
-       (method url-fetch)
-       (uri (string-append "mirror://kde//stable/plasma/" version
-                           "/libksysguard-" version ".tar.xz"))
-       (sha256
-        (base32
-         "0k8q5bxk9zyv7c3nny1c399v8acqs618nw39q20pj2qdijl9ibvh"))))
-    (native-inputs
-     `(("extra-cmake-modules" ,extra-cmake-modules)
-       ("pkg-config" ,pkg-config)))
-    (inputs
-     `(("kconfigwidgets" ,kconfigwidgets)
-       ("kiconthemes" ,kiconthemes)
-       ("kwindowsystem" ,kwindowsystem)
-       ("ki18n" ,ki18n)
-       ("kauth" ,kauth)
-       ("kcompletion" ,kcompletion)
-       ("kconfig" ,kconfig)
-       ("kcoreaddons" ,kcoreaddons)
-       ("kwidgetsaddons" ,kwidgetsaddons)
-       ("kservice" ,kservice)
-       ("qtbase" ,qtbase)
-       ("qtscript" ,qtscript)
-       ("qtwebkit" ,qtwebkit)
-       ("qtx11extras" ,qtx11extras)
-       ("plasma" ,plasma-framework)
-       ("zlib" ,zlib)))
-    (build-system cmake-build-system)
-    (arguments
-     `(#:configure-flags
-       `(,(string-append "-DKDE_INSTALL_DATADIR="
-                         (assoc-ref %outputs "out") "/share"))
-       #:phases
-       (modify-phases %standard-phases
-         (add-before 'configure 'patch-cmakelists
-           (lambda _
-             ;; TODO: Verify: This should no longer be necessary, since
-             ;; KF5AuthConfig.cmake.in contains this already.
-             (substitute* "processcore/CMakeLists.txt"
-               (("KAUTH_HELPER_INSTALL_DIR") "KDE_INSTALL_LIBEXECDIR"))))
-         (add-before 'check 'check-setup
-           (lambda _
-             ;; make Qt render "offscreen", required for tests
-             (setenv "QT_QPA_PLATFORM" "offscreen")))
-         (replace 'check
-           (lambda _
-             ;; TODO: Fix this failing test-case
-             (invoke "ctest" "-E" "processtest"))))))
-    (home-page "https://www.kde.org/info/plasma-5.13.4.php")
-    (synopsis "Network enabled task and system monitoring")
-    (description "KSysGuard can obtain information on system load and
-manage running processes.  It obtains this information by interacting
-with a ksysguardd daemon, which may also run on a remote system.")
-    (license license:gpl3+)))
-
 (define-public qca
   (package
     (name "qca")
diff --git a/gnu/packages/linux.scm b/gnu/packages/linux.scm
index d7c242015e..47b07340b8 100644
--- a/gnu/packages/linux.scm
+++ b/gnu/packages/linux.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2015 Taylan Ulrich Bayırlı/Kammer <taylanbayirli@gmail.com>
 ;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
-;;; Copyright © 2016, 2017, 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2016, 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2016, 2017 Alex Kost <alezost@gmail.com>
 ;;; Copyright © 2016 Raymond Nicholson <rain1@openmailbox.org>
 ;;; Copyright © 2016 Mathieu Lirzin <mthl@gnu.org>
@@ -413,8 +413,8 @@ for ARCH and optionally VARIANT, or #f if there is no such configuration."
 It has been modified to remove all non-free binary blobs.")
     (license license:gpl2)))
 
-(define %linux-libre-version "4.20.7")
-(define %linux-libre-hash "05jbpg4ivcbr8xi5ki03f4n57hnhc52nfjk1ik8czag7f4ph9v0b")
+(define %linux-libre-version "4.20.8")
+(define %linux-libre-hash "0qhwavylmkqqd84dym87ajzwnxc6rjpdijw7kbriqjmgjfsmf8sw")
 
 (define %linux-libre-4.20-patches
   (list %boot-logo-patch
@@ -427,8 +427,8 @@ It has been modified to remove all non-free binary blobs.")
                     #:patches %linux-libre-4.20-patches
                     #:configuration-file kernel-config))
 
-(define %linux-libre-4.19-version "4.19.20")
-(define %linux-libre-4.19-hash "1rs4jvp88n23n9a6f037sn498fzl1fn96zsjjmjngb8nmjr1y9vp")
+(define %linux-libre-4.19-version "4.19.21")
+(define %linux-libre-4.19-hash "064vwfkcmc8ad37m1ziqc14vhvx3mba12rc9220xng3a48gwpi2m")
 
 (define %linux-libre-4.19-patches
   (list %boot-logo-patch
@@ -441,8 +441,8 @@ It has been modified to remove all non-free binary blobs.")
                     #:patches %linux-libre-4.19-patches
                     #:configuration-file kernel-config))
 
-(define %linux-libre-4.14-version "4.14.98")
-(define %linux-libre-4.14-hash "165wlqqpb16zhrwihsb75y153xyz8q5dbi14xim7jsnvwlbh5i79")
+(define %linux-libre-4.14-version "4.14.99")
+(define %linux-libre-4.14-hash "1d9h4l22j3jy1bkq8i4g6axwpq04jbsys4bg6bx8sbl590c9lrwx")
 
 (define-public linux-libre-4.14
   (make-linux-libre %linux-libre-4.14-version
@@ -451,8 +451,8 @@ It has been modified to remove all non-free binary blobs.")
                     #:configuration-file kernel-config))
 
 (define-public linux-libre-4.9
-  (make-linux-libre "4.9.155"
-                    "0fyj8dqhpqi3jh6i58avyvmg4mp9bplnpiffpp3fdka4v85lx152"
+  (make-linux-libre "4.9.156"
+                    "1ipmn5axlhfsfzqvwwyv7scrvfja39w7v68cnvbqiaq8fkjgffxg"
                     '("x86_64-linux" "i686-linux")
                     #:configuration-file kernel-config))
 
@@ -3031,7 +3031,7 @@ arrays when needed.")
 (define-public multipath-tools
   (package
     (name "multipath-tools")
-    (version "0.7.7")
+    (version "0.7.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://git.opensvc.com/?p=multipath-tools/"
@@ -3039,7 +3039,7 @@ arrays when needed.")
               (file-name (string-append name "-" version ".tar.gz"))
               (sha256
                (base32
-                "1lirhjjv37jnf42r1ylrhi8kbzx9j9xnyfzvxpp6bzcp0fawigig"))
+                "1jhi6bhl4ih75rfmyyjxd35ghgch5ls1gw40cjxwy9d6bd41z6q1"))
               (modules '((guix build utils)))
               (snippet
                '(begin
@@ -3077,7 +3077,7 @@ arrays when needed.")
                  (("/usr/include/libudev.h")
                   (string-append udev "/include/libudev.h")))
                #t)))
-         (delete 'configure))))
+         (delete 'configure))))         ; no configure script
     (native-inputs
      `(("perl" ,perl)
        ("pkg-config" ,pkg-config)
@@ -3102,7 +3102,7 @@ Linux Device Mapper multipathing driver:
 @code{dm} multipath devices.
 @item @command{kpartx} - Create device maps from partition tables.
 @end enumerate")
-    (license (list license:gpl2+             ; Main distribution.
+    (license (list license:gpl2+             ; main distribution
                    license:lgpl2.0+))))      ; libmpathcmd/mpath_cmd.h
 
 (define-public libaio
diff --git a/gnu/packages/lxqt.scm b/gnu/packages/lxqt.scm
index b3d32c284f..a37d2a1dd5 100644
--- a/gnu/packages/lxqt.scm
+++ b/gnu/packages/lxqt.scm
@@ -43,8 +43,8 @@
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages gtk)
   #:use-module (gnu packages image)
-  #:use-module (gnu packages kde)
   #:use-module (gnu packages kde-frameworks)
+  #:use-module (gnu packages kde-plasma)
   #:use-module (gnu packages linux)
   #:use-module (gnu packages perl)
   #:use-module (gnu packages lxde)
diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm
index 8ae069ba52..2c06519e1f 100644
--- a/gnu/packages/mail.scm
+++ b/gnu/packages/mail.scm
@@ -8,7 +8,7 @@
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;; Copyright © 2015, 2016, 2018 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2015 Andreas Enge <andreas@enge.fr>
-;;; Copyright © 2015, 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2015, 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2016 Al McElrath <hello@yrns.org>
 ;;; Copyright © 2016 Leo Famulari <leo@famulari.name>
@@ -1066,7 +1066,7 @@ which can add many functionalities to the base client.")
 (define-public msmtp
   (package
     (name "msmtp")
-    (version "1.8.2")
+    (version "1.8.3")
     (source
      (origin
        (method url-fetch)
@@ -1074,7 +1074,7 @@ which can add many functionalities to the base client.")
                            "/msmtp-" version ".tar.xz"))
        (sha256
         (base32
-         "14w7lmw1jxlganfk089b0ib23y5917mxbg3xqpid007dd4cmq66i"))))
+         "1d4jdgrx4czp66nnwdsy938lzr4llhwyy0715pwg0j6h6gyyxciw"))))
     (build-system gnu-build-system)
     (inputs
      `(("libsecret" ,libsecret)
@@ -1200,15 +1200,16 @@ facilities for checking incoming mail.")
 (define-public dovecot
   (package
     (name "dovecot")
-    (version "2.3.4")
+    (version "2.3.4.1")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://www.dovecot.org/releases/"
                            (version-major+minor version) "/"
                            name "-" version ".tar.gz"))
-       (sha256 (base32
-                "01ggzf7b3jpl89mjiqr7xbpbs181g2gjf6wzg70qaqfzz3ppc6yr"))))
+       (sha256
+        (base32
+         "01xa8d08c0j51w5kmqb3vnzrvh17hkzx5a5p7fb5hgn3wln3x1xq"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("pkg-config" ,pkg-config)))
@@ -1729,27 +1730,23 @@ maintained.")
 (define-public khard
   (package
     (name "khard")
-    (version "0.12.2")
+    (version "0.13.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "01y52qmab4cw9wmx87aahnxbyaxrxw8j2wx06mpcqsfvgk8d54wi"))))
+                "1lyjiskc6ckjjylzr04dnm66p3cnn7vlysw9c27qls3y3ywx14zw"))))
     (build-system python-build-system)
     (arguments
-      `(#:phases
-        (modify-phases %standard-phases
-          (add-after 'install 'install-doc
-            (lambda* (#:key outputs #:allow-other-keys)
-              (let* ((out (assoc-ref outputs "out"))
-                     (doc (string-append out "/share/doc/khard")))
-                (copy-recursively "misc/khard" doc)
-                #t))))
-        ;; Tests are currently only runnable without preexisting data on
-        ;; the development branch:
-        ;; https://github.com/scheibler/khard/issues/176
-        #:tests? #f))
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-after 'install 'install-doc
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (doc (string-append out "/share/doc/khard")))
+               (copy-recursively "misc/khard" doc)
+               #t))))))
     (propagated-inputs
      `(("python-atomicwrites" ,python-atomicwrites)
        ("python-configobj" ,python-configobj)
@@ -2596,14 +2593,14 @@ servers.  The 4rev1 and 4 versions of IMAP are supported.")
 (define-public urlscan
   (package
     (name "urlscan")
-    (version "0.9.1")
+    (version "0.9.2")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "urlscan" version))
         (sha256
          (base32
-          "0vpdyrx51sg9a8kswa7ibbcgcpvc7r03aq8x4n4c7v2xg0v3c7wb"))))
+          "1zldck7vnp7z04aacbx3cprf5kzha4gfhjmss4iv2lh5nccxjfzx"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-urwid" ,python-urwid)))
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 34c72dadad..ace7765c5d 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2014, 2016, 2017 John Darrington <jmd@gnu.org>
-;;; Copyright © 2014, 2015, 2016, 2017, 2018 Eric Bavier <bavier@member.fsf.org>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014 Federico Beffa <beffa@fbengineering.ch>
 ;;; Copyright © 2014 Mathieu Lirzin <mathieu.lirzin@openmailbox.org>
 ;;; Copyright © 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus <rekado@elephly.net>
@@ -584,7 +584,8 @@ problems in numerical linear algebra.")
                            version ".tgz"))
        (sha256
         (base32
-         "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c"))))
+         "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c"))
+       (patches (search-patches "scalapack-blacs-mpi-deprecations.patch"))))
     (build-system cmake-build-system)
     (inputs
      `(("mpi" ,openmpi)
@@ -1635,7 +1636,7 @@ September 2004}")
 (define-public petsc
   (package
     (name "petsc")
-    (version "3.10.2")
+    (version "3.10.3")
     (source
      (origin
       (method url-fetch)
@@ -1643,7 +1644,7 @@ September 2004}")
       (uri (string-append "http://ftp.mcs.anl.gov/pub/petsc/release-snapshots/"
                           "petsc-lite-" version ".tar.gz"))
       (sha256
-       (base32 "0bl64pydak3rblnjffi482r8bin4xim9sb37ksl2jkcxf0i0irsi"))))
+       (base32 "10p9ap1rp6k8k2g8zdc505kdlsc3976fjymyp393sccjapm50dph"))))
     (outputs '("out"                    ;libraries and headers
                "examples"))             ;~30MiB of examples
     (build-system gnu-build-system)
@@ -3973,6 +3974,96 @@ as equations, scalars, vectors, and matrices.")
 theories} (SMT) solver.  It provides a C/C++ API, as well as Python bindings.")
     (license license:expat)))
 
+(define-public elpa
+  (package
+    (name "elpa")
+    (version "2018.11.001")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "http://elpa.mpcdf.mpg.de/html/Releases/"
+                                  version "/elpa-" version ".tar.gz"))
+              (sha256
+               (base32
+                "05hv3v5i6xmziaizw350ff72y1c3k662r85fm3xfdrkclj5zw9yc"))))
+    (build-system gnu-build-system)
+    (native-inputs
+     `(("fortran" ,gfortran)
+       ("perl" ,perl)))                 ;for configure and deps
+    (inputs
+     `(("blas" ,openblas)))
+    (arguments
+     `(#:configure-flags
+       `("--enable-openmp"
+         "--with-mpi=no"
+         ;; ELPA unfortunately does not support runtime dispatch, so we can
+         ;; only enable the "generic" kernels.  See the "Cross compilation"
+         ;; section of INSTALL.md.
+         "--enable-generic"
+         "--disable-sse" "--disable-sse-assembly" ;Require SSE3
+         "--disable-avx" "--disable-avx2" "--disable-avx512"
+         ,(string-append "CFLAGS=-O3 "
+                         "-funsafe-loop-optimizations -funsafe-math-optimizations "
+                         "-ftree-vect-loop-version -ftree-vectorize "
+                         ,(let ((system (or (%current-target-system)
+                                            (%current-system))))
+                            (cond
+                             ((or (string-prefix? "x86_64" system)
+                                  (string-prefix? "i686" system))
+                              "-msse2")
+                             (else "")))))
+       #:parallel-tests? #f             ;tests are multi-threaded, via BLAS
+       #:phases
+       (modify-phases %standard-phases
+         (add-before 'configure 'patch-header-generation
+           (lambda _
+             (substitute* "configure"
+               (("^  *make.*top_srcdir=\"\\$srcdir\"" &)
+                (string-append & " CPP=\"$CPP\"")))
+             #t))
+         (add-before 'check 'setup-tests
+           (lambda _
+             ;; Decrease test time and RAM use by computing fewer eigenvalues.
+             ;; The flags are (MATRIX-SIZE, EIGENVALUES, BLOCK-SIZE), where
+             ;; the default is (500, 250, 16) for C tests and (5000, 150, 16)
+             ;; for Fortran.  This also causes several tests to pass that
+             ;; otherwise would otherwise fail with matrix size 5000; possibly
+             ;; due to floating point tolerances that are too tight.
+             (setenv "TEST_FLAGS" "1500 50 16") ;from elpa.spec
+             (setenv "OMP_NUM_THREADS" (number->string (parallel-job-count)))
+             (substitute* "Makefile"
+               ;; Test scripts are generated, patch the shebang
+               (("#!/bin/bash") (string-append "#!" (which "sh"))))
+             #t)))))
+    (home-page "http://elpa.mpcdf.mpg.de")
+    (synopsis "Eigenvalue solvers for symmetric matrices")
+    (description
+     "The ELPA library provides efficient and scalable direct eigensolvers for
+symmetric matrices.")
+    (license license:lgpl3)))
+
+(define-public elpa-openmpi
+  (package (inherit elpa)
+    (name "elpa-openmpi")
+    (inputs
+     `(("mpi" ,openmpi)
+       ("scalapack" ,scalapack)
+       ,@(package-inputs elpa)))
+    (arguments
+     (substitute-keyword-arguments (package-arguments elpa)
+       ((#:configure-flags cf '())
+        `(cons "--with-mpi=yes" (delete "--with-mpi=no" ,cf)))
+       ((#:phases phases '%standard-phases)
+        `(modify-phases ,phases
+           (add-before 'check 'mpi-setup
+             (lambda _
+               ;; Tests use 2 mpi tasks by default, use our remaining build
+               ;; cores as OpenMP threads.
+               (setenv "OMP_NUM_THREADS" (number->string
+                                          (max (quotient (parallel-job-count) 2)
+                                               1)))
+               (,%openmpi-setup)))))))
+    (synopsis "Eigenvalue solvers for symmetric matrices (with MPI support)")))
+
 (define-public elemental
   (package
     (name "elemental")
diff --git a/gnu/packages/maven.scm b/gnu/packages/maven.scm
index 5379eb9166..2d7d54dd9d 100644
--- a/gnu/packages/maven.scm
+++ b/gnu/packages/maven.scm
@@ -1,5 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2018 Julien Lepiller <julien@lepiller.eu>
+;;; Copyright © 2019 Tobias Geerinckx-Rite <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -20,6 +21,7 @@
   #:use-module ((guix licenses) #:prefix license:)
   #:use-module (guix packages)
   #:use-module (guix download)
+  #:use-module (guix git-download)
   #:use-module (guix utils)
   #:use-module (guix build-system ant)
   #:use-module (gnu packages)
@@ -79,12 +81,14 @@ provides the Maven plugin generating the component metadata.")))
     (name "maven-resolver-api")
     (version "1.3.1")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/apache/maven-resolver/"
-                                  "archive/maven-resolver-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/apache/maven-resolver.git")
+                    (commit (string-append "maven-resolver-" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0gfkf8g5zbjh6ciq3dnby9m5irhrbyc7d2jzic9l8xx6hl61q6mm"))))
+                "1x1gll8nkfl6zgnab78fxxvvhg42b2grxgdh1wp2h4qxsjkxg93d"))))
     (build-system ant-build-system)
     (arguments
      `(#:jar-name "maven-resolver-api.jar"
diff --git a/gnu/packages/messaging.scm b/gnu/packages/messaging.scm
index d8ec64f6c3..1991528a53 100644
--- a/gnu/packages/messaging.scm
+++ b/gnu/packages/messaging.scm
@@ -1238,7 +1238,7 @@ with several different talk daemons at the same time.")
 (define-public gloox
   (package
     (name "gloox")
-    (version "1.0.21")
+    (version "1.0.22")
     (source
      (origin
        (method url-fetch)
@@ -1246,7 +1246,7 @@ with several different talk daemons at the same time.")
                            version ".tar.bz2"))
        (sha256
         (base32
-         "1k57qgif1yii515m6jaqaibkdysfab6394bpawd2l67321f1a4rw"))))
+         "0r69gq8if9yy1amjzl7qrq9lzhhna7qgz905ln4wvkwchha1ppja"))))
     (build-system gnu-build-system)
     (inputs
      `(("libidn" ,libidn)
diff --git a/gnu/packages/mpd.scm b/gnu/packages/mpd.scm
index bf12239a02..7885e21aa4 100644
--- a/gnu/packages/mpd.scm
+++ b/gnu/packages/mpd.scm
@@ -4,7 +4,7 @@
 ;;; Copyright © 2014 Cyrill Schenkel <cyrill.schenkel@gmail.com>
 ;;; Copyright © 2014 Ian Denhardt <ian@zenhack.net>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
-;;; Copyright © 2016, 2018 Leo Famulari <leo@famulari.name>
+;;; Copyright © 2016, 2018, 2019 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -91,7 +91,7 @@ interfacing MPD in the C, C++ & Objective C languages.")
 (define-public mpd
   (package
     (name "mpd")
-    (version "0.20.23")
+    (version "0.21.4")
     (source (origin
               (method url-fetch)
               (uri
@@ -100,18 +100,19 @@ interfacing MPD in the C, C++ & Objective C languages.")
                               "/mpd-" version ".tar.xz"))
               (sha256
                (base32
-                "1smg6hab4kwrzsw1k7vlpya3ampdk8psnmkrzxlgb43j4fgmygjh"))))
-    (build-system gnu-build-system)
+                "1ix52vfa8k8my4xyr8b0phg8605b2xchyzyva908m08vpzm14w94"))))
+    (build-system meson-build-system)
     (arguments
-     `(#:phases
+     `(#:configure-flags '("-Ddocumentation=true") ; The default is 'false'...
+       #:phases
        (modify-phases %standard-phases
-         (add-after 'install 'install-service-files
-           (lambda* (#:key outputs #:allow-other-keys)
-             (let* ((out (assoc-ref outputs "out"))
-                    (systemd (string-append out "/etc/systemd/system"))
-                    (systemd-user (string-append out "/etc/systemd/user")))
-               (install-file "systemd/system/mpd.service" systemd)
-               (install-file "systemd/user/mpd.service" systemd-user)
+         (add-before 'configure 'expand-C++-include-path
+           ;; Make <gcc>/include/c++/ext/string_conversions.h find <stdlib.h>.
+           (lambda* (#:key inputs #:allow-other-keys)
+             (let* ((path "CPLUS_INCLUDE_PATH")
+                    (gcc  (assoc-ref inputs "gcc"))
+                    (c++  (string-append gcc "/include/c++")))
+               (setenv path (string-append c++ ":" (getenv path)))
                #t))))))
     (inputs `(("ao" ,ao)
               ("alsa-lib" ,alsa-lib)
@@ -134,7 +135,11 @@ interfacing MPD in the C, C++ & Objective C languages.")
               ("pulseaudio" ,pulseaudio)
               ("sqlite" ,sqlite)
               ("zlib" ,zlib)))
-    (native-inputs `(("pkg-config" ,pkg-config)))
+    ;; MPD > 0.21 requires > GCC 6
+    (native-inputs `(("gcc" ,gcc-8)
+                     ("gcc-lib" ,gcc-8 "lib")
+                     ("pkg-config" ,pkg-config)
+                     ("python-sphinx" ,python-sphinx)))
     ;; Missing optional inputs:
     ;;   libyajl
     ;;   libcdio_paranoia
diff --git a/gnu/packages/music.scm b/gnu/packages/music.scm
index c4333364e1..f1733b7ae1 100644
--- a/gnu/packages/music.scm
+++ b/gnu/packages/music.scm
@@ -3374,7 +3374,7 @@ plugins, a switch trigger, a toggle switch, and a peakmeter.")
          ("python-rdflib" ,python-rdflib)
          ("python" ,python)
          ("jack" ,jack-1)
-         ("lv2" ,lv2-devel)
+         ("lv2" ,lv2)
          ("lilv" ,lilv)
          ("raul" ,raul-devel)
          ("ganv" ,ganv-devel)
diff --git a/gnu/packages/netpbm.scm b/gnu/packages/netpbm.scm
index e5246660a2..9c0e970257 100644
--- a/gnu/packages/netpbm.scm
+++ b/gnu/packages/netpbm.scm
@@ -135,7 +135,9 @@
              ;; 'gsc', so look for that instead.
              (substitute* "converter/other/pstopnm.c"
                (("\"%s/gs\"")
-                "\"%s/gsc\"")))
+                "\"%s/gsc\"")
+               (("/usr/bin/gs")
+                (string-append (assoc-ref inputs "ghostscript") "/bin/gsc"))))
            #t))
        (add-before 'check 'setup-check
          (lambda _
diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm
index c71ae4a24d..d73b6f1108 100644
--- a/gnu/packages/networking.scm
+++ b/gnu/packages/networking.scm
@@ -16,7 +16,7 @@
 ;;; Copyright © 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2017, 2018, 2019 Rutger Helling <rhelling@mykolab.com>
-;;; Copyright © 2017 Gábor Boskovits <boskovits@gmail.com>
+;;; Copyright © 2017, 2019 Gábor Boskovits <boskovits@gmail.com>
 ;;; Copyright © 2017 Thomas Danckaert <post@thomasdanckaert.be>
 ;;; Copyright © 2018 Adam Van Ymeren <adam@vany.ca>
 ;;; Copyright © 2018 Fis Trivial <ybbs.daans@hotmail.com>
@@ -98,6 +98,7 @@
   #:use-module (gnu packages textutils)
   #:use-module (gnu packages tls)
   #:use-module (gnu packages valgrind)
+  #:use-module (gnu packages web)
   #:use-module (gnu packages wm)
   #:use-module (gnu packages wxwidgets)
   #:use-module (gnu packages xml)
@@ -1401,7 +1402,7 @@ procedure calls (RPCs).")
 (define-public openvswitch
   (package
     (name "openvswitch")
-    (version "2.8.1")
+    (version "2.10.1")
     (source (origin
               (method url-fetch)
               (uri (string-append
@@ -1409,7 +1410,7 @@ procedure calls (RPCs).")
                     version ".tar.gz"))
               (sha256
                (base32
-                "14rqqhfyv49irz8ag0qbv9jn8z0bn3qzxir3r074y16p4sg4674d"))))
+                "103wi6k8xal0z1pyy680gms56skagh6jawa2ja588ljr55jcg4sg"))))
     (build-system gnu-build-system)
     (arguments
      '(;; FIXME: many tests fail with:
@@ -2367,3 +2368,31 @@ communication over HTTP.")
 be used to manage peer-to-peer network connections as needed for real time
 communication.")
     (license license:gpl3+)))
+
+(define-public frrouting
+  (package
+    (name "frrouting")
+    (version "6.0.2")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append "https://github.com/FRRouting/frr/releases/"
+                                  "download/frr-" version "/frr-" version
+                                  ".tar.xz"))
+              (sha256
+               (base32
+                "0xfrvi62w8qlh46f504ka0skb7pm0g0p8vmdng4w90gsbirlzpdd"))))
+    (build-system gnu-build-system)
+    (inputs
+     `(("c-ares" ,c-ares)
+       ("json-c" ,json-c)
+       ("readline" ,readline)))
+    (native-inputs
+     `(("perl" ,perl)
+       ("pkg-config" ,pkg-config)
+       ("python" ,python-wrapper)
+       ("python-pytest" ,python-pytest)))
+    (home-page "https://frrouting.org/")
+    (synopsis "IP routing protocol suite")
+    (description "FRRouting (FRR) is an IP routing protocol suite which includes
+protocol daemons for BGP, IS-IS, LDP, OSPF, PIM, and RIP. ")
+    (license license:gpl2+)))
diff --git a/gnu/packages/ocaml.scm b/gnu/packages/ocaml.scm
index 07fcf92aea..5101cc6b0a 100644
--- a/gnu/packages/ocaml.scm
+++ b/gnu/packages/ocaml.scm
@@ -4683,6 +4683,110 @@ in-line tests in ocaml code.  It is part of Jane Street's PPX rewriters
 collection.")
     (license license:expat)))
 
+(define-public ocaml-bindlib
+  (package
+    (name "ocaml-bindlib")
+    (version "5.0.1")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/rlepigre/ocaml-bindlib.git")
+             (commit (string-append "ocaml-bindlib_" version))))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "1f8kr81w8vsi4gv61xn1qbc6zrzkjp8l9ix0942vjh4gjxc74v75"))))
+    (build-system ocaml-build-system)
+    (arguments
+     `(#:tests? #f ;no tests
+       #:use-make? #t
+       #:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'build
+           (lambda _
+             (invoke "make")))
+         (replace 'install
+           (lambda _
+             (invoke "make" "install"))))))
+    (native-inputs
+     `(("ocamlbuild" ,ocamlbuild)
+       ("ocaml-findlib" ,ocaml-findlib)))
+    (home-page "https://rlepigre.github.io/ocaml-bindlib/")
+    (synopsis "OCaml Bindlib library for bound variables")
+    (description "Bindlib is a library allowing the manipulation of data
+structures with bound variables.  It is particularly useful when writing ASTs
+for programming languages, but also for manipulating terms of the λ-calculus
+or quantified formulas.")
+    (license license:gpl3+)))
+
+(define-public ocaml-earley
+  (package
+    (name "ocaml-earley")
+    (version "2.0.0")
+    (home-page "https://github.com/rlepigre/ocaml-earley")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url (string-append home-page ".git"))
+             (commit version)))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "18k7bi7krc4bvqnhijz1q0pfr0nfahghfjifci8rh1q4i5zd0xz5"))))
+    (build-system dune-build-system)
+    (arguments
+     `(#:test-target "."))
+    (synopsis "Parsing library based on Earley Algorithm")
+    (description "Earley is a parser combinator library base on Earley's
+algorithm.  It is intended to be used in conjunction with an OCaml syntax
+extension which allows the definition of parsers inside the language.  There
+is also support for writing OCaml syntax extensions in a camlp4 style.")
+    (license license:cecill-b)))
+
+(define-public ocaml-timed
+  (package
+    (name "ocaml-timed")
+    (version "1.0")
+    (home-page "https://github.com/rlepigre/ocaml-timed")
+    (source (origin
+              (method git-fetch)
+              (uri (git-reference
+                    (url (string-append home-page ".git"))
+                    (commit (string-append name "_" version))))
+              (sha256
+               (base32
+                "0hfxz710faxy5yk97bkfnw87r732jcxxhmjppwrbfdb6pd0wks96"))
+              (file-name (git-file-name name version))))
+    (build-system ocaml-build-system)
+    (arguments
+     '(#:phases
+       (modify-phases %standard-phases
+         (delete 'configure)
+         (replace 'build
+           (lambda _
+             (invoke "make")))
+         (replace 'install
+           (lambda _
+             (invoke "make" "install")))
+         (replace 'check
+           (lambda _
+             (invoke "make" "tests"))))))
+    (synopsis "Timed references for imperative state")
+    (description "Timed references for imperative state.  This module provides
+an alternative type for references (or mutable cells) supporting undo/redo
+operations.  In particular, an abstract notion of time is used to capture the
+state of the references at any given point, so that it can be restored.  Note
+that usual reference operations only have a constant time / memory overhead
+(compared to those of the standard library).
+
+Moreover, we provide an alternative implementation based on the references
+of the standard library (Pervasives module).  However, it is less efficient
+than the first one.")
+    (license license:expat)))
+
 (define-public ocaml-biniou
  (package
    (name "ocaml-biniou")
diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm
index 2e69cd151e..af9667cd91 100644
--- a/gnu/packages/package-management.scm
+++ b/gnu/packages/package-management.scm
@@ -107,8 +107,8 @@
   ;; Note: the 'update-guix-package.scm' script expects this definition to
   ;; start precisely like this.
   (let ((version "0.16.0")
-        (commit "4bddd12ad540d45a33a5f9f129b896843dca603f")
-        (revision 9))
+        (commit "2637cfd7a4894ef2a2a7da3bb46d8815c43d7e75")
+        (revision 10))
     (package
       (name "guix")
 
@@ -124,7 +124,7 @@
                       (commit commit)))
                 (sha256
                  (base32
-                  "1abn4ghb25kn0cmr9dbb3q3fxdcc0g2fnnmbrykxv111s6ahdmlw"))
+                  "1m734gm45x9czqspsagdfxfgw5wiiinyq1s6zc9gfv7d3b2w472k"))
                 (file-name (string-append "guix-" version "-checkout"))))
       (build-system gnu-build-system)
       (arguments
@@ -541,13 +541,13 @@ transactions from C or Python.")
 (define-public diffoscope
   (package
     (name "diffoscope")
-    (version "106")
+    (version "111")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "0qrfp7nha2n2s9h5ibcf7rqji1amh4cqbcf80m6anim6p3ik26da"))))
+                "0sgqx3n0ny75bvcw10pfx61z67mdk5hx3mblw4gqnn2h9vc74qz1"))))
     (build-system python-build-system)
     (arguments
      `(#:phases (modify-phases %standard-phases
@@ -952,7 +952,7 @@ the bootloader configuration.")
 (define-public flatpak
   (package
    (name "flatpak")
-   (version "1.2.0")
+   (version "1.2.3")
    (source
     (origin
      (method url-fetch)
@@ -960,7 +960,7 @@ the bootloader configuration.")
                          version "/flatpak-" version ".tar.xz"))
      (sha256
       (base32
-       "1bdk6qmsvy4d80245x1si9qvrga2f2yalj9qfmf1lqj5ljxxxifv"))))
+       "0i0dn3w3545lvmjlzqj3j70lk8yrq64r9frp1rk6a161gwq20ixv"))))
    (build-system gnu-build-system)
    (arguments
     '(#:tests? #f ;; Tests fail due to trying to create files where it can't.
diff --git a/gnu/packages/parallel.scm b/gnu/packages/parallel.scm
index 25d3c0737c..c024c5ceae 100644
--- a/gnu/packages/parallel.scm
+++ b/gnu/packages/parallel.scm
@@ -7,7 +7,7 @@
 ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2016 Ben Woodcroft <donttrustben@gmail.com>
 ;;; Copyright © 2017, 2018 Rutger Helling <rhelling@mykolab.com>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;; Copyright © 2018 Clément Lassieur <clement@lassieur.org>
 ;;;
 ;;; This file is part of GNU Guix.
@@ -48,7 +48,7 @@
 (define-public parallel
   (package
     (name "parallel")
-    (version "20181222")
+    (version "20190122")
     (source
      (origin
       (method url-fetch)
@@ -56,7 +56,7 @@
                           version ".tar.bz2"))
       (sha256
        (base32
-        "0sd39nzgff3rpyzfwkffb5yxbdm5r6amrkslbgpjlrcrymy9z305"))))
+        "030rjhis8s47gkm05k4vc9p886cxvadpgzs8rqmgzvlc38h5ywxf"))))
     (build-system gnu-build-system)
     (arguments
      `(#:phases
diff --git a/gnu/packages/patches/glibc-CVE-2018-11236.patch b/gnu/packages/patches/glibc-CVE-2018-11236.patch
new file mode 100644
index 0000000000..4f8a72943c
--- /dev/null
+++ b/gnu/packages/patches/glibc-CVE-2018-11236.patch
@@ -0,0 +1,149 @@
+https://sourceware.org/git/gitweb.cgi?p=glibc.git;a=patch;h=5460617d1567657621107d895ee2dd83bc1f88f2
+with ChangeLog removed
+
+From 5460617d1567657621107d895ee2dd83bc1f88f2 Mon Sep 17 00:00:00 2001
+From: Paul Pluzhnikov <ppluzhnikov@google.com>
+Date: Tue, 8 May 2018 18:12:41 -0700
+Subject: [PATCH] Fix BZ 22786: integer addition overflow may cause stack
+ buffer overflow when realpath() input length is close to SSIZE_MAX.
+
+2018-05-09  Paul Pluzhnikov  <ppluzhnikov@google.com>
+
+	[BZ #22786]
+	* stdlib/canonicalize.c (__realpath): Fix overflow in path length
+	computation.
+	* stdlib/Makefile (test-bz22786): New test.
+	* stdlib/test-bz22786.c: New test.
+---
+ ChangeLog             |  8 +++++
+ stdlib/Makefile       |  2 +-
+ stdlib/canonicalize.c |  2 +-
+ stdlib/test-bz22786.c | 90 +++++++++++++++++++++++++++++++++++++++++++++++++++
+ 4 files changed, 100 insertions(+), 2 deletions(-)
+ create mode 100644 stdlib/test-bz22786.c
+
+diff --git a/stdlib/Makefile b/stdlib/Makefile
+index af1643c..1ddb1f9 100644
+--- a/stdlib/Makefile
++++ b/stdlib/Makefile
+@@ -84,7 +84,7 @@ tests		:= tst-strtol tst-strtod testmb testrand testsort testdiv   \
+ 		   tst-cxa_atexit tst-on_exit test-atexit-race 		    \
+ 		   test-at_quick_exit-race test-cxa_atexit-race             \
+ 		   test-on_exit-race test-dlclose-exit-race 		    \
+-		   tst-makecontext-align
++		   tst-makecontext-align test-bz22786
+ 
+ tests-internal	:= tst-strtod1i tst-strtod3 tst-strtod4 tst-strtod5i \
+ 		   tst-tls-atexit tst-tls-atexit-nodelete
+diff --git a/stdlib/canonicalize.c b/stdlib/canonicalize.c
+index 4135f3f..390fb43 100644
+--- a/stdlib/canonicalize.c
++++ b/stdlib/canonicalize.c
+@@ -181,7 +181,7 @@ __realpath (const char *name, char *resolved)
+ 		extra_buf = __alloca (path_max);
+ 
+ 	      len = strlen (end);
+-	      if ((long int) (n + len) >= path_max)
++	      if (path_max - n <= len)
+ 		{
+ 		  __set_errno (ENAMETOOLONG);
+ 		  goto error;
+diff --git a/stdlib/test-bz22786.c b/stdlib/test-bz22786.c
+new file mode 100644
+index 0000000..e7837f9
+--- /dev/null
++++ b/stdlib/test-bz22786.c
+@@ -0,0 +1,90 @@
++/* Bug 22786: test for buffer overflow in realpath.
++   Copyright (C) 2018 Free Software Foundation, Inc.
++   This file is part of the GNU C Library.
++
++   The GNU C Library is free software; you can redistribute it and/or
++   modify it under the terms of the GNU Lesser General Public
++   License as published by the Free Software Foundation; either
++   version 2.1 of the License, or (at your option) any later version.
++
++   The GNU C Library is distributed in the hope that it will be useful,
++   but WITHOUT ANY WARRANTY; without even the implied warranty of
++   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
++   Lesser General Public License for more details.
++
++   You should have received a copy of the GNU Lesser General Public
++   License along with the GNU C Library; if not, see
++   <http://www.gnu.org/licenses/>.  */
++
++/* This file must be run from within a directory called "stdlib".  */
++
++#include <errno.h>
++#include <limits.h>
++#include <stdio.h>
++#include <stdlib.h>
++#include <string.h>
++#include <unistd.h>
++#include <sys/stat.h>
++#include <sys/types.h>
++#include <support/test-driver.h>
++#include <libc-diag.h>
++
++static int
++do_test (void)
++{
++  const char dir[] = "bz22786";
++  const char lnk[] = "bz22786/symlink";
++
++  rmdir (dir);
++  if (mkdir (dir, 0755) != 0 && errno != EEXIST)
++    {
++      printf ("mkdir %s: %m\n", dir);
++      return EXIT_FAILURE;
++    }
++  if (symlink (".", lnk) != 0 && errno != EEXIST)
++    {
++      printf ("symlink (%s, %s): %m\n", dir, lnk);
++      return EXIT_FAILURE;
++    }
++
++  const size_t path_len = (size_t) INT_MAX + 1;
++
++  DIAG_PUSH_NEEDS_COMMENT;
++#if __GNUC_PREREQ (7, 0)
++  /* GCC 7 warns about too-large allocations; here we need such
++     allocation to succeed for the test to work.  */
++  DIAG_IGNORE_NEEDS_COMMENT (7, "-Walloc-size-larger-than=");
++#endif
++  char *path = malloc (path_len);
++  DIAG_POP_NEEDS_COMMENT;
++
++  if (path == NULL)
++    {
++      printf ("malloc (%zu): %m\n", path_len);
++      return EXIT_UNSUPPORTED;
++    }
++
++  /* Construct very long path = "bz22786/symlink/aaaa....."  */
++  char *p = mempcpy (path, lnk, sizeof (lnk) - 1);
++  *(p++) = '/';
++  memset (p, 'a', path_len - (path - p) - 2);
++  p[path_len - (path - p) - 1] = '\0';
++
++  /* This call crashes before the fix for bz22786 on 32-bit platforms.  */
++  p = realpath (path, NULL);
++
++  if (p != NULL || errno != ENAMETOOLONG)
++    {
++      printf ("realpath: %s (%m)", p);
++      return EXIT_FAILURE;
++    }
++
++  /* Cleanup.  */
++  unlink (lnk);
++  rmdir (dir);
++
++  return 0;
++}
++
++#define TEST_FUNCTION do_test
++#include <support/test-driver.c>
+-- 
+2.9.3
+
diff --git a/gnu/packages/patches/glibc-CVE-2018-11237.patch b/gnu/packages/patches/glibc-CVE-2018-11237.patch
new file mode 100644
index 0000000000..8a7c604ecd
--- /dev/null
+++ b/gnu/packages/patches/glibc-CVE-2018-11237.patch
@@ -0,0 +1,55 @@
+https://sourceware.org/git/gitweb.cgi?p=glibc.git;a=patch;h=9aaaab7c6e4176e61c59b0a63c6ba906d875dc0e
+with the ChangeLog removed
+
+From 9aaaab7c6e4176e61c59b0a63c6ba906d875dc0e Mon Sep 17 00:00:00 2001
+From: Andreas Schwab <schwab@suse.de>
+Date: Tue, 22 May 2018 10:37:59 +0200
+Subject: [PATCH] Don't write beyond destination in
+ __mempcpy_avx512_no_vzeroupper (bug 23196)
+
+When compiled as mempcpy, the return value is the end of the destination
+buffer, thus it cannot be used to refer to the start of it.
+---
+ ChangeLog                                               | 9 +++++++++
+ string/test-mempcpy.c                                   | 1 +
+ sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S | 5 +++--
+ 3 files changed, 13 insertions(+), 2 deletions(-)
+
+diff --git a/string/test-mempcpy.c b/string/test-mempcpy.c
+index c08fba8..d98ecdd 100644
+--- a/string/test-mempcpy.c
++++ b/string/test-mempcpy.c
+@@ -18,6 +18,7 @@
+    <http://www.gnu.org/licenses/>.  */
+ 
+ #define MEMCPY_RESULT(dst, len) (dst) + (len)
++#define MIN_PAGE_SIZE 131072
+ #define TEST_MAIN
+ #define TEST_NAME "mempcpy"
+ #include "test-string.h"
+diff --git a/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S b/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
+index 23c0f7a..effc3ac 100644
+--- a/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
++++ b/sysdeps/x86_64/multiarch/memmove-avx512-no-vzeroupper.S
+@@ -336,6 +336,7 @@ L(preloop_large):
+ 	vmovups	(%rsi), %zmm4
+ 	vmovups	0x40(%rsi), %zmm5
+ 
++	mov	%rdi, %r11
+ /* Align destination for access with non-temporal stores in the loop.  */
+ 	mov	%rdi, %r8
+ 	and	$-0x80, %rdi
+@@ -366,8 +367,8 @@ L(gobble_256bytes_nt_loop):
+ 	cmp	$256, %rdx
+ 	ja	L(gobble_256bytes_nt_loop)
+ 	sfence
+-	vmovups	%zmm4, (%rax)
+-	vmovups	%zmm5, 0x40(%rax)
++	vmovups	%zmm4, (%r11)
++	vmovups	%zmm5, 0x40(%r11)
+ 	jmp	L(check)
+ 
+ L(preloop_large_bkw):
+-- 
+2.9.3
+
diff --git a/gnu/packages/patches/gnome-shell-theme.patch b/gnu/packages/patches/gnome-shell-theme.patch
new file mode 100644
index 0000000000..fc7f7caf0f
--- /dev/null
+++ b/gnu/packages/patches/gnome-shell-theme.patch
@@ -0,0 +1,53 @@
+Adjust GNOME-Shell so that it uses a Guix theme by default.
+
+Patch by Ludovic Courtès <ludo@gnu.org>.
+
+diff --git a/data/gnome-shell-theme.gresource.xml b/data/gnome-shell-theme.gresource.xml
+index 76aeaa5..8eaf32e 100644
+--- a/data/gnome-shell-theme.gresource.xml
++++ b/data/gnome-shell-theme.gresource.xml
+@@ -22,6 +22,8 @@
+     <file>no-events.svg</file>
+     <file>no-notifications.svg</file>
+     <file>noise-texture.png</file>
++    <file>guix-background.png</file>
++    <file>guix-logo.png</file>
+     <file>pad-osd.css</file>
+     <file>page-indicator-active.svg</file>
+     <file>page-indicator-inactive.svg</file>
+diff --git a/data/theme/gnome-shell-sass/_common.scss b/data/theme/gnome-shell-sass/_common.scss
+index 54d9f39..b9badd0 100644
+--- a/data/theme/gnome-shell-sass/_common.scss
++++ b/data/theme/gnome-shell-sass/_common.scss
+@@ -1742,7 +1742,16 @@ $legacy_icon_size: 24px;
+ 
+ }
+ 
+-  .login-dialog-logo-bin { padding: 24px 0px; }
++  .login-dialog-logo-bin {
++      /* Make it a bit narrower than .login-dialog-user-list.  */
++      width: 12em;
++      height: 8em;
++      background: url(resource:///org/gnome/shell/theme/guix-logo.png);
++      background-color: transparent;
++      background-repeat: no-repeat;
++      background-size: contain;
++      background-position: center; }
++
+   .login-dialog-banner { color: darken($osd_fg_color,10%); }
+   .login-dialog-button-box { spacing: 5px; }
+   .login-dialog-message-warning { color: $warning_color; }
+@@ -1889,9 +1898,10 @@ $legacy_icon_size: 24px;
+ }
+ 
+ #lockDialogGroup {
+-  background: #2e3436 url(resource:///org/gnome/shell/theme/noise-texture.png);
+-  background-repeat: repeat;
+-}
++  background: #2e3436 url(resource:///org/gnome/shell/theme/guix-background.png);
++  background-repeat: no-repeat;
++  background-size: cover;
++  background-position: center; }
+ 
+ #screenShieldNotifications {
+   StButton#vhandle, StButton#hhandle {
diff --git a/gnu/packages/patches/kio-search-smbd-on-PATH.patch b/gnu/packages/patches/kio-search-smbd-on-PATH.patch
index 47e20cfc0b..55535ffa11 100644
--- a/gnu/packages/patches/kio-search-smbd-on-PATH.patch
+++ b/gnu/packages/patches/kio-search-smbd-on-PATH.patch
@@ -16,7 +16,7 @@ pkgs/development/libraries/kde-frameworks/kio/samba-search-path.patch
 +        QLatin1Char pathSep(':');
 +        QStringList paths = QFile::decodeName(pathEnv).split(pathSep, QString::SkipEmptyParts);
 +        for (QStringList::iterator it = paths.begin(); it != paths.end(); ++it) {
-+            it->append("/smbd");
++            it->append(QStringLiteral("/smbd"));
 +            if (QFile::exists(*it)) {
 +                return true;
 +            }
diff --git a/gnu/packages/patches/ledger-revert-boost-python-fix.patch b/gnu/packages/patches/ledger-revert-boost-python-fix.patch
deleted file mode 100644
index 99f48f6e46..0000000000
--- a/gnu/packages/patches/ledger-revert-boost-python-fix.patch
+++ /dev/null
@@ -1,39 +0,0 @@
-From 01220484f428a447e9b00e071a0d85185f30e1de Mon Sep 17 00:00:00 2001
-From: Alexis Hildebrandt <afh@surryhill.net>
-Date: Wed, 22 Jun 2016 15:43:37 +0200
-Subject: [PATCH] Revert "[python] Add fix for Boost.Python compile errors"
-
-This reverts commit 11590e134eafa768ccc4a171cc7fb216e906095f.
----
- src/py_commodity.cc | 3 ---
- src/py_journal.cc   | 3 ---
- 2 files changed, 6 deletions(-)
-
-diff --git a/src/py_commodity.cc b/src/py_commodity.cc
-index 5aafa6c..c457e64 100644
---- a/src/py_commodity.cc
-+++ b/src/py_commodity.cc
-@@ -243,9 +243,6 @@ namespace {
- 
- void export_commodity()
- {
--#if BOOST_VERSION >= 106000
--  python::register_ptr_to_python< shared_ptr<commodity_pool_t> >();
--#endif
-   class_< commodity_pool_t, shared_ptr<commodity_pool_t>,
-           boost::noncopyable > ("CommodityPool", no_init)
-     .add_property("null_commodity",
-diff --git a/src/py_journal.cc b/src/py_journal.cc
-index c1c38a9..879f954 100644
---- a/src/py_journal.cc
-+++ b/src/py_journal.cc
-@@ -232,9 +232,6 @@ void export_journal()
-           boost::noncopyable >("PostHandler")
-     ;
- 
--#if BOOST_VERSION >= 106000
--  python::register_ptr_to_python< shared_ptr<collector_wrapper> >();
--#endif
-   class_< collector_wrapper, shared_ptr<collector_wrapper>,
-           boost::noncopyable >("PostCollectorWrapper", no_init)
-     .def("__len__", &collector_wrapper::length)
diff --git a/gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch b/gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch
new file mode 100644
index 0000000000..573920cb99
--- /dev/null
+++ b/gnu/packages/patches/red-eclipse-remove-gamma-name-hack.patch
@@ -0,0 +1,52 @@
+From b16b4963c1ad81bb9ef784bc4913a4c8ab5f1bb4 Mon Sep 17 00:00:00 2001
+From: Lee Salzman <lsalzman@gmail.com>
+Date: Tue, 12 Sep 2017 14:45:10 -0400
+Subject: [PATCH] remove gamma name hack
+
+---
+ src/engine/main.cpp | 6 +++---
+ src/shared/cube.h   | 8 --------
+ 2 files changed, 3 insertions(+), 11 deletions(-)
+
+diff --git a/src/engine/main.cpp b/src/engine/main.cpp
+index 1032004d..77c9233a 100644
+--- a/src/engine/main.cpp
++++ b/src/engine/main.cpp
+@@ -278,10 +278,10 @@ static void setgamma(int val)
+ }
+ 
+ static int curgamma = 100;
+-VARF(IDF_PERSIST, gamma, 30, 100, 300,
++VARFN(IDF_PERSIST, gamma, reqgamma, 30, 100, 300,
+ {
+-    if(initing || gamma == curgamma) return;
+-    curgamma = gamma;
++    if(initing || reqgamma == curgamma) return;
++    curgamma = reqgamma;
+     setgamma(curgamma);
+ });
+ 
+diff --git a/src/shared/cube.h b/src/shared/cube.h
+index 3864c492..7ff5e267 100644
+--- a/src/shared/cube.h
++++ b/src/shared/cube.h
+@@ -3,19 +3,11 @@
+ 
+ #define _FILE_OFFSET_BITS 64
+ 
+-#ifdef __GNUC__
+-#define gamma __gamma
+-#endif
+-
+ #ifdef WIN32
+ #define _USE_MATH_DEFINES
+ #endif
+ #include <math.h>
+ 
+-#ifdef __GNUC__
+-#undef gamma
+-#endif
+-
+ #include <string.h>
+ #include <stdio.h>
+ #include <stdlib.h>
diff --git a/gnu/packages/patches/runc-CVE-2019-5736.patch b/gnu/packages/patches/runc-CVE-2019-5736.patch
new file mode 100644
index 0000000000..f629fcbfb4
--- /dev/null
+++ b/gnu/packages/patches/runc-CVE-2019-5736.patch
@@ -0,0 +1,343 @@
+Fix CVE-2019-5736:
+
+https://cve.mitre.org/cgi-bin/cvename.cgi?name=CVE-2019-5736
+https://seclists.org/oss-sec/2019/q1/119
+
+Patch copied from upstream source repository:
+
+https://github.com/opencontainers/runc/commit/0a8e4117e7f715d5fbeef398405813ce8e88558b
+
+From 0a8e4117e7f715d5fbeef398405813ce8e88558b Mon Sep 17 00:00:00 2001
+From: Aleksa Sarai <asarai@suse.de>
+Date: Wed, 9 Jan 2019 13:40:01 +1100
+Subject: [PATCH] nsenter: clone /proc/self/exe to avoid exposing host binary
+ to container
+
+There are quite a few circumstances where /proc/self/exe pointing to a
+pretty important container binary is a _bad_ thing, so to avoid this we
+have to make a copy (preferably doing self-clean-up and not being
+writeable).
+
+We require memfd_create(2) -- though there is an O_TMPFILE fallback --
+but we can always extend this to use a scratch MNT_DETACH overlayfs or
+tmpfs. The main downside to this approach is no page-cache sharing for
+the runc binary (which overlayfs would give us) but this is far less
+complicated.
+
+This is only done during nsenter so that it happens transparently to the
+Go code, and any libcontainer users benefit from it. This also makes
+ExtraFiles and --preserve-fds handling trivial (because we don't need to
+worry about it).
+
+Fixes: CVE-2019-5736
+Co-developed-by: Christian Brauner <christian.brauner@ubuntu.com>
+Signed-off-by: Aleksa Sarai <asarai@suse.de>
+---
+ libcontainer/nsenter/cloned_binary.c | 268 +++++++++++++++++++++++++++
+ libcontainer/nsenter/nsexec.c        |  11 ++
+ 2 files changed, 279 insertions(+)
+ create mode 100644 libcontainer/nsenter/cloned_binary.c
+
+diff --git a/libcontainer/nsenter/cloned_binary.c b/libcontainer/nsenter/cloned_binary.c
+new file mode 100644
+index 000000000..c8a42c23f
+--- /dev/null
++++ b/libcontainer/nsenter/cloned_binary.c
+@@ -0,0 +1,268 @@
++/*
++ * Copyright (C) 2019 Aleksa Sarai <cyphar@cyphar.com>
++ * Copyright (C) 2019 SUSE LLC
++ *
++ * Licensed under the Apache License, Version 2.0 (the "License");
++ * you may not use this file except in compliance with the License.
++ * You may obtain a copy of the License at
++ *
++ *     http://www.apache.org/licenses/LICENSE-2.0
++ *
++ * Unless required by applicable law or agreed to in writing, software
++ * distributed under the License is distributed on an "AS IS" BASIS,
++ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
++ * See the License for the specific language governing permissions and
++ * limitations under the License.
++ */
++
++#define _GNU_SOURCE
++#include <unistd.h>
++#include <stdio.h>
++#include <stdlib.h>
++#include <stdbool.h>
++#include <string.h>
++#include <limits.h>
++#include <fcntl.h>
++#include <errno.h>
++
++#include <sys/types.h>
++#include <sys/stat.h>
++#include <sys/vfs.h>
++#include <sys/mman.h>
++#include <sys/sendfile.h>
++#include <sys/syscall.h>
++
++/* Use our own wrapper for memfd_create. */
++#if !defined(SYS_memfd_create) && defined(__NR_memfd_create)
++#  define SYS_memfd_create __NR_memfd_create
++#endif
++#ifdef SYS_memfd_create
++#  define HAVE_MEMFD_CREATE
++/* memfd_create(2) flags -- copied from <linux/memfd.h>. */
++#  ifndef MFD_CLOEXEC
++#    define MFD_CLOEXEC       0x0001U
++#    define MFD_ALLOW_SEALING 0x0002U
++#  endif
++int memfd_create(const char *name, unsigned int flags)
++{
++	return syscall(SYS_memfd_create, name, flags);
++}
++#endif
++
++/* This comes directly from <linux/fcntl.h>. */
++#ifndef F_LINUX_SPECIFIC_BASE
++#  define F_LINUX_SPECIFIC_BASE 1024
++#endif
++#ifndef F_ADD_SEALS
++#  define F_ADD_SEALS (F_LINUX_SPECIFIC_BASE + 9)
++#  define F_GET_SEALS (F_LINUX_SPECIFIC_BASE + 10)
++#endif
++#ifndef F_SEAL_SEAL
++#  define F_SEAL_SEAL   0x0001	/* prevent further seals from being set */
++#  define F_SEAL_SHRINK 0x0002	/* prevent file from shrinking */
++#  define F_SEAL_GROW   0x0004	/* prevent file from growing */
++#  define F_SEAL_WRITE  0x0008	/* prevent writes */
++#endif
++
++#define RUNC_SENDFILE_MAX 0x7FFFF000 /* sendfile(2) is limited to 2GB. */
++#ifdef HAVE_MEMFD_CREATE
++#  define RUNC_MEMFD_COMMENT "runc_cloned:/proc/self/exe"
++#  define RUNC_MEMFD_SEALS \
++	(F_SEAL_SEAL | F_SEAL_SHRINK | F_SEAL_GROW | F_SEAL_WRITE)
++#endif
++
++static void *must_realloc(void *ptr, size_t size)
++{
++	void *old = ptr;
++	do {
++		ptr = realloc(old, size);
++	} while(!ptr);
++	return ptr;
++}
++
++/*
++ * Verify whether we are currently in a self-cloned program (namely, is
++ * /proc/self/exe a memfd). F_GET_SEALS will only succeed for memfds (or rather
++ * for shmem files), and we want to be sure it's actually sealed.
++ */
++static int is_self_cloned(void)
++{
++	int fd, ret, is_cloned = 0;
++
++	fd = open("/proc/self/exe", O_RDONLY|O_CLOEXEC);
++	if (fd < 0)
++		return -ENOTRECOVERABLE;
++
++#ifdef HAVE_MEMFD_CREATE
++	ret = fcntl(fd, F_GET_SEALS);
++	is_cloned = (ret == RUNC_MEMFD_SEALS);
++#else
++	struct stat statbuf = {0};
++	ret = fstat(fd, &statbuf);
++	if (ret >= 0)
++		is_cloned = (statbuf.st_nlink == 0);
++#endif
++	close(fd);
++	return is_cloned;
++}
++
++/*
++ * Basic wrapper around mmap(2) that gives you the file length so you can
++ * safely treat it as an ordinary buffer. Only gives you read access.
++ */
++static char *read_file(char *path, size_t *length)
++{
++	int fd;
++	char buf[4096], *copy = NULL;
++
++	if (!length)
++		return NULL;
++
++	fd = open(path, O_RDONLY | O_CLOEXEC);
++	if (fd < 0)
++		return NULL;
++
++	*length = 0;
++	for (;;) {
++		int n;
++
++		n = read(fd, buf, sizeof(buf));
++		if (n < 0)
++			goto error;
++		if (!n)
++			break;
++
++		copy = must_realloc(copy, (*length + n) * sizeof(*copy));
++		memcpy(copy + *length, buf, n);
++		*length += n;
++	}
++	close(fd);
++	return copy;
++
++error:
++	close(fd);
++	free(copy);
++	return NULL;
++}
++
++/*
++ * A poor-man's version of "xargs -0". Basically parses a given block of
++ * NUL-delimited data, within the given length and adds a pointer to each entry
++ * to the array of pointers.
++ */
++static int parse_xargs(char *data, int data_length, char ***output)
++{
++	int num = 0;
++	char *cur = data;
++
++	if (!data || *output != NULL)
++		return -1;
++
++	while (cur < data + data_length) {
++		num++;
++		*output = must_realloc(*output, (num + 1) * sizeof(**output));
++		(*output)[num - 1] = cur;
++		cur += strlen(cur) + 1;
++	}
++	(*output)[num] = NULL;
++	return num;
++}
++
++/*
++ * "Parse" out argv and envp from /proc/self/cmdline and /proc/self/environ.
++ * This is necessary because we are running in a context where we don't have a
++ * main() that we can just get the arguments from.
++ */
++static int fetchve(char ***argv, char ***envp)
++{
++	char *cmdline = NULL, *environ = NULL;
++	size_t cmdline_size, environ_size;
++
++	cmdline = read_file("/proc/self/cmdline", &cmdline_size);
++	if (!cmdline)
++		goto error;
++	environ = read_file("/proc/self/environ", &environ_size);
++	if (!environ)
++		goto error;
++
++	if (parse_xargs(cmdline, cmdline_size, argv) <= 0)
++		goto error;
++	if (parse_xargs(environ, environ_size, envp) <= 0)
++		goto error;
++
++	return 0;
++
++error:
++	free(environ);
++	free(cmdline);
++	return -EINVAL;
++}
++
++static int clone_binary(void)
++{
++	int binfd, memfd;
++	ssize_t sent = 0;
++
++#ifdef HAVE_MEMFD_CREATE
++	memfd = memfd_create(RUNC_MEMFD_COMMENT, MFD_CLOEXEC | MFD_ALLOW_SEALING);
++#else
++	memfd = open("/tmp", O_TMPFILE | O_EXCL | O_RDWR | O_CLOEXEC, 0711);
++#endif
++	if (memfd < 0)
++		return -ENOTRECOVERABLE;
++
++	binfd = open("/proc/self/exe", O_RDONLY | O_CLOEXEC);
++	if (binfd < 0)
++		goto error;
++
++	sent = sendfile(memfd, binfd, NULL, RUNC_SENDFILE_MAX);
++	close(binfd);
++	if (sent < 0)
++		goto error;
++
++#ifdef HAVE_MEMFD_CREATE
++	int err = fcntl(memfd, F_ADD_SEALS, RUNC_MEMFD_SEALS);
++	if (err < 0)
++		goto error;
++#else
++	/* Need to re-open "memfd" as read-only to avoid execve(2) giving -EXTBUSY. */
++	int newfd;
++	char *fdpath = NULL;
++
++	if (asprintf(&fdpath, "/proc/self/fd/%d", memfd) < 0)
++		goto error;
++	newfd = open(fdpath, O_RDONLY | O_CLOEXEC);
++	free(fdpath);
++	if (newfd < 0)
++		goto error;
++
++	close(memfd);
++	memfd = newfd;
++#endif
++	return memfd;
++
++error:
++	close(memfd);
++	return -EIO;
++}
++
++int ensure_cloned_binary(void)
++{
++	int execfd;
++	char **argv = NULL, **envp = NULL;
++
++	/* Check that we're not self-cloned, and if we are then bail. */
++	int cloned = is_self_cloned();
++	if (cloned > 0 || cloned == -ENOTRECOVERABLE)
++		return cloned;
++
++	if (fetchve(&argv, &envp) < 0)
++		return -EINVAL;
++
++	execfd = clone_binary();
++	if (execfd < 0)
++		return -EIO;
++
++	fexecve(execfd, argv, envp);
++	return -ENOEXEC;
++}
+diff --git a/libcontainer/nsenter/nsexec.c b/libcontainer/nsenter/nsexec.c
+index 28269dfc0..7750af35e 100644
+--- a/libcontainer/nsenter/nsexec.c
++++ b/libcontainer/nsenter/nsexec.c
+@@ -534,6 +534,9 @@ void join_namespaces(char *nslist)
+ 	free(namespaces);
+ }
+ 
++/* Defined in cloned_binary.c. */
++extern int ensure_cloned_binary(void);
++
+ void nsexec(void)
+ {
+ 	int pipenum;
+@@ -549,6 +552,14 @@ void nsexec(void)
+ 	if (pipenum == -1)
+ 		return;
+ 
++	/*
++	 * We need to re-exec if we are not in a cloned binary. This is necessary
++	 * to ensure that containers won't be able to access the host binary
++	 * through /proc/self/exe. See CVE-2019-5736.
++	 */
++	if (ensure_cloned_binary() < 0)
++		bail("could not ensure we are a cloned binary");
++
+ 	/* Parse all of the netlink configuration. */
+ 	nl_parse(pipenum, &config);
+ 
diff --git a/gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch b/gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch
new file mode 100644
index 0000000000..6ec1b8f21f
--- /dev/null
+++ b/gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch
@@ -0,0 +1,170 @@
+From f11c3f094ed5ca727ec819983425b6641db8227c Mon Sep 17 00:00:00 2001
+From: Eric Bavier <bavier@member.fsf.org>
+Date: Wed, 13 Feb 2019 09:32:11 -0600
+Subject: [PATCH] BLACS: Remove use of long-deprecated MPI1 functions.
+
+* BLACS/SRC/blacs_get_.c: 'MPI_Attr_get' -> 'MPI_Comm_get_attr'.
+* BLACS/SRC/cgamn2d_.c, BLACS/SRC/cgamx2d_.c, BLACS/SRC/dgamn2d_.c,
+BLACS/SRC/dgamx2d_.c, BLACS/SRC/igamn2d_.c, BLACS/SRC/igamx2d_.c,
+BLACS/SRC/sgamn2d_.c, BLACS/SRC/sgamx2d_.c, BLACS/SRC/zgamn2d_.c,
+BLACS/SRC/zgamx2d_.c: 'MPI_Type_struct' -> 'MPI_Type_create_struct'.
+---
+ BLACS/SRC/blacs_get_.c | 2 +-
+ BLACS/SRC/cgamn2d_.c   | 2 +-
+ BLACS/SRC/cgamx2d_.c   | 2 +-
+ BLACS/SRC/dgamn2d_.c   | 2 +-
+ BLACS/SRC/dgamx2d_.c   | 2 +-
+ BLACS/SRC/igamn2d_.c   | 2 +-
+ BLACS/SRC/igamx2d_.c   | 2 +-
+ BLACS/SRC/sgamn2d_.c   | 2 +-
+ BLACS/SRC/sgamx2d_.c   | 2 +-
+ BLACS/SRC/zgamn2d_.c   | 2 +-
+ BLACS/SRC/zgamx2d_.c   | 2 +-
+ 11 files changed, 11 insertions(+), 11 deletions(-)
+
+diff --git a/BLACS/SRC/blacs_get_.c b/BLACS/SRC/blacs_get_.c
+index e979767..d4b04cf 100644
+--- a/BLACS/SRC/blacs_get_.c
++++ b/BLACS/SRC/blacs_get_.c
+@@ -23,7 +23,7 @@ F_VOID_FUNC blacs_get_(int *ConTxt, int *what, int *val)
+    case SGET_MSGIDS:
+       if (BI_COMM_WORLD == NULL) Cblacs_pinfo(val, &val[1]);
+       iptr = &val[1];
+-      ierr=MPI_Attr_get(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
++      ierr=MPI_Comm_get_attr(MPI_COMM_WORLD, MPI_TAG_UB, (BVOID **) &iptr,val);
+       val[0] = 0;
+       val[1] = *iptr;
+       break;
+diff --git a/BLACS/SRC/cgamn2d_.c b/BLACS/SRC/cgamn2d_.c
+index 2db6ccb..6958f32 100644
+--- a/BLACS/SRC/cgamn2d_.c
++++ b/BLACS/SRC/cgamn2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC cgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/cgamx2d_.c b/BLACS/SRC/cgamx2d_.c
+index 707c0b6..f802d01 100644
+--- a/BLACS/SRC/cgamx2d_.c
++++ b/BLACS/SRC/cgamx2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC cgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/dgamn2d_.c b/BLACS/SRC/dgamn2d_.c
+index dff23b4..a2627ac 100644
+--- a/BLACS/SRC/dgamn2d_.c
++++ b/BLACS/SRC/dgamn2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC dgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/dgamx2d_.c b/BLACS/SRC/dgamx2d_.c
+index a51f731..2a644d0 100644
+--- a/BLACS/SRC/dgamx2d_.c
++++ b/BLACS/SRC/dgamx2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC dgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/igamn2d_.c b/BLACS/SRC/igamn2d_.c
+index 16bc003..f6a7859 100644
+--- a/BLACS/SRC/igamn2d_.c
++++ b/BLACS/SRC/igamn2d_.c
+@@ -218,7 +218,7 @@ F_VOID_FUNC igamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/igamx2d_.c b/BLACS/SRC/igamx2d_.c
+index 8165cbe..a7cfcc6 100644
+--- a/BLACS/SRC/igamx2d_.c
++++ b/BLACS/SRC/igamx2d_.c
+@@ -218,7 +218,7 @@ F_VOID_FUNC igamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/sgamn2d_.c b/BLACS/SRC/sgamn2d_.c
+index d6c95e5..569c797 100644
+--- a/BLACS/SRC/sgamn2d_.c
++++ b/BLACS/SRC/sgamn2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC sgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/sgamx2d_.c b/BLACS/SRC/sgamx2d_.c
+index 4b0af6f..8897ece 100644
+--- a/BLACS/SRC/sgamx2d_.c
++++ b/BLACS/SRC/sgamx2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC sgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/zgamn2d_.c b/BLACS/SRC/zgamn2d_.c
+index 9de2b23..37897df 100644
+--- a/BLACS/SRC/zgamn2d_.c
++++ b/BLACS/SRC/zgamn2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC zgamn2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+diff --git a/BLACS/SRC/zgamx2d_.c b/BLACS/SRC/zgamx2d_.c
+index 414c381..0e9d474 100644
+--- a/BLACS/SRC/zgamx2d_.c
++++ b/BLACS/SRC/zgamx2d_.c
+@@ -221,7 +221,7 @@ F_VOID_FUNC zgamx2d_(int *ConTxt, F_CHAR scope, F_CHAR top, int *m, int *n,
+       {
+ #endif
+       i = 2;
+-      ierr=MPI_Type_struct(i, len, disp, dtypes, &MyType);
++      ierr=MPI_Type_create_struct(i, len, disp, dtypes, &MyType);
+       ierr=MPI_Type_commit(&MyType);
+       bp->N = bp2->N = 1;
+       bp->dtype = bp2->dtype = MyType;
+-- 
+2.20.1
+
diff --git a/gnu/packages/pdf.scm b/gnu/packages/pdf.scm
index 504e69c769..e6f0ae1a74 100644
--- a/gnu/packages/pdf.scm
+++ b/gnu/packages/pdf.scm
@@ -748,18 +748,20 @@ using a stylus.")
 (define-public python-reportlab
   (package
     (name "python-reportlab")
-    (version "3.4.0")
+    (version "3.5.13")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "reportlab" version))
               (sha256
                (base32
-                "0hy304pzsz9lblmk7mrbk2682bi911lxgvzx2kcfpmfzb5gg7sjv"))))
+                "1wxgcj46rm83qz97i8ygvd59bks60kr6vvnz12ygw640z58ff5k1"))))
     (build-system python-build-system)
     (arguments
      '(;; FIXME: There is one test failure, but it does not cause the
        ;; build to fail. No time to investigate right now.
        #:test-target "tests"))
+    (inputs
+     `(("freetype" ,freetype)))
     (propagated-inputs
      `(("python-pillow" ,python-pillow)))
     (home-page "https://www.reportlab.com")
diff --git a/gnu/packages/python-crypto.scm b/gnu/packages/python-crypto.scm
index 077330e54a..2e08243178 100644
--- a/gnu/packages/python-crypto.scm
+++ b/gnu/packages/python-crypto.scm
@@ -743,14 +743,14 @@ file, and more.")
 (define-public python-ecpy
   (package
     (name "python-ecpy")
-    (version "0.8.2")
+    (version "0.10.0")
     (source
       (origin
         (method url-fetch)
         (uri (pypi-uri "ECPy" version))
         (sha256
           (base32
-            "090fqnj8z0xm44jrfpll7j45r68m6kp7mjr7yxzg93j42h3sj285"))))
+            "1gc3i5s93zq6x1nkaxkq1dvmsc12vmrw0hns9f5s1hcb78ni52c8"))))
     (build-system python-build-system)
     (propagated-inputs
      `(("python-future" ,python-future)))
@@ -803,14 +803,14 @@ protocol (Javascript Object Signing and Encryption).")
 (define-public python-pycryptodome
   (package
     (name "python-pycryptodome")
-    (version "3.7.2")
+    (version "3.7.3")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "pycryptodome" version))
        (sha256
         (base32
-         "1xxf5cyhlc5ak5skf4zgqz9yk5fj5g70hd06hc1jym995lxpxz7m"))))
+         "0dh6ky5ngxayyn5f6n7gdamjl49g3khz6pdx9sdnag1zwi8248hs"))))
     (build-system python-build-system)
     (home-page "https://www.pycryptodome.org")
     (synopsis "Cryptographic library for Python")
diff --git a/gnu/packages/python-xyz.scm b/gnu/packages/python-xyz.scm
index 36e8ce0120..55ac37ffb0 100644
--- a/gnu/packages/python-xyz.scm
+++ b/gnu/packages/python-xyz.scm
@@ -1,7 +1,7 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013 Nikita Karetnikov <nikita@karetnikov.org>
 ;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
-;;; Copyright © 2013, 2014, 2015, 2016 Andreas Enge <andreas@enge.fr>
+;;; Copyright © 2013, 2014, 2015, 2016, 2019 Andreas Enge <andreas@enge.fr>
 ;;; Copyright © 2014, 2015 Mark H Weaver <mhw@netris.org>
 ;;; Copyright © 2014, 2017 Eric Bavier <bavier@member.fsf.org>
 ;;; Copyright © 2014, 2015 Federico Beffa <beffa@fbengineering.ch>
@@ -1938,6 +1938,40 @@ easier to build concurrent applications.")
 (define-public python2-pykka
   (package-with-python2 python-pykka))
 
+(define-public python-pymsgbox
+  (package
+    (name "python-pymsgbox")
+    (version "1.0.6")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+              ;; LICENSE.txt is not present on pypi
+              (url "https://github.com/asweigart/PyMsgBox")
+              (commit "55926b55f46caa969c5ddb87990ebea2737bd66f")))
+       (file-name (git-file-name name version))
+       (sha256
+        (base32
+         "0zy7rjfpwlrd8b64j7jk2lb8m2npc21rnpwakpfvwgl4nxdy80rg"))))
+    (arguments
+     ;; Circular dependency to run tests:
+     ;; Tests need pyautogui, which depends on pymsgbox.
+     '(#:tests? #f))
+    (build-system python-build-system)
+    (home-page "https://github.com/asweigart/PyMsgBox")
+    (synopsis "Python module for JavaScript-like message boxes")
+    (description
+     "PyMsgBox is a simple, cross-platform, pure Python module for
+JavaScript-like message boxes.  Types of dialog boxes include:
+@enumerate
+@item alert
+@item confirm
+@item prompt
+@item password
+@end enumerate
+")
+    (license license:bsd-3)))
+
 (define-public python-pympler
   (package
     (name "python-pympler")
@@ -2189,6 +2223,57 @@ logging and tracing of the execution.")
 (define-public python2-joblib
   (package-with-python2 python-joblib))
 
+(define-public python-daemon
+  (package
+    (name "python-daemon")
+    (version "2.2.3")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "python-daemon" version))
+       (sha256
+        (base32
+         "09fcjdjzk9ywmpnrj62iyxqgcygzdafsz41qlrk2dknzbagcmzmg"))))
+    (build-system python-build-system)
+    (arguments
+     `(#:phases
+       (modify-phases %standard-phases
+         (add-before 'check 'disable-tests
+           (lambda _
+             ;; FIXME: Determine why test fails
+             (substitute* "test/test_daemon.py"
+               (("test_detaches_process_context")
+                "skip_test_detaches_process_context"))
+             #t)))))
+    (propagated-inputs
+     `(("python-lockfile" ,python-lockfile)))
+    (native-inputs
+     `(("python-unittest2" ,python-unittest2)
+       ("python-testtools" ,python-testtools)
+       ("python-testscenarios" ,python-testscenarios)
+       ("python-mock" ,python-mock)
+       ("python-docutils" ,python-docutils)))
+    (home-page "https://pagure.io/python-daemon/")
+    (synopsis "Python library for making a Unix daemon process")
+    (description "Python-daemon is a library that assists a Python program to
+turn itself into a well-behaved Unix daemon process, as specified in PEP 3143.
+
+This library provides a @code{DaemonContext} class that manages the following
+important tasks for becoming a daemon process:
+@enumerate
+@item Detach the process into its own process group.
+@item Set process environment appropriate for running inside a chroot.
+@item Renounce suid and sgid privileges.
+@item Close all open file descriptors.
+@item Change the working directory, uid, gid, and umask.
+@item Set appropriate signal handlers.
+@item Open new file descriptors for stdin, stdout, and stderr.
+@item Manage a specified PID lock file.
+@item Register cleanup functions for at-exit processing.
+@end enumerate")
+    ;; Only setup.py is gpl3+, everything else is apache 2.0 licensed.
+    (license (list license:asl2.0 license:gpl3+))))
+
 (define-public python-docutils
   (package
     (name "python-docutils")
@@ -2493,6 +2578,84 @@ which can produce feeds in RSS 2.0, RSS 0.91, and Atom formats.")
 Language (TOML) configuration files.")
     (license license:expat)))
 
+(define-public python-jsonrpc-server
+  (package
+    (name "python-jsonrpc-server")
+    (version "0.1.2")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "python-jsonrpc-server" version))
+       (sha256
+        (base32
+         "0m4ykpcdy52x37n1ikysp07j7p8ialcdvvvsrjp3545sn7iiid09"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-future" ,python-future)
+       ("python-mock" ,python-mock)
+       ("python-pytest" ,python-pytest)))
+    (home-page
+     "https://github.com/palantir/python-jsonrpc-server")
+    (synopsis "JSON RPC 2.0 server library")
+    (description
+     "This packages provides a JSON RPC 2.0 server library for Python.")
+    (license license:expat)))
+
+(define-public python-pydocstyle
+  (package
+    (name "python-pydocstyle")
+    (version "3.0.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "pydocstyle" version))
+       (sha256
+        (base32
+         "1m1xv9clkg9lgzyza6dnj359z04vh5g0h49nhzghv7lg81gchhap"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-six" ,python-six)
+       ("python-snowballstemmer" ,python-snowballstemmer)))
+    (home-page
+     "https://github.com/PyCQA/pydocstyle/")
+    (synopsis "Python docstring style checker")
+    (description
+     "This package provides a style checker for the Python Language
+Server (PLS).")
+    (license license:expat)))
+
+(define-public python-language-server
+  (package
+    (name "python-language-server")
+    (version "0.22.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (pypi-uri "python-language-server" version))
+       (sha256
+        (base32
+         "04pbxl06hg0ddm2xx99jn9jh40yv0mmzdjw8pqd2rbcdg42hhia6"))))
+    (build-system python-build-system)
+    (propagated-inputs
+     `(("python-pluggy" ,python-pluggy)
+       ("python-jsonrpc-server" ,python-jsonrpc-server)
+       ("python-jedi" ,python-jedi)
+       ("python-yapf" ,python-yapf)
+       ("python-pyflakes" ,python-pyflakes)
+       ("python-pydocstyle" ,python-pydocstyle)
+       ("python-pycodestyle" ,python-pycodestyle)
+       ("python-mccabe" ,python-mccabe)
+       ("python-rope" ,python-rope)
+       ("python-autopep8" ,python-autopep8)))
+    (home-page "https://github.com/palantir/python-language-server")
+    (synopsis "Python implementation of the Language Server Protocol")
+    (description
+     "The Python Language Server (pyls) is an implementation of the Python 3
+language specification for the Language Server Protocol (LSP).  This tool is
+used in text editing environments to provide a complete and integrated
+feature-set for programming Python effectively.")
+    (license license:expat)))
+
 (define-public python-black
   (package
     (name "python-black")
@@ -2635,14 +2798,14 @@ and is very extensible.")
 (define-public python-cython
   (package
     (name "python-cython")
-    (version "0.28.4")
+    (version "0.29.5")
     (source
      (origin
        (method url-fetch)
        (uri (pypi-uri "Cython" version))
        (sha256
         (base32
-         "0imw9s2rbrh32clbl10csnwmig9p3nzkrd2baxxxfmnrsc42pb3n"))))
+         "1wfb68g115gmf3mv23w0hh972b0ll85gpb92ci28x6h997br0llx"))))
     (build-system python-build-system)
     ;; we need the full python package and not just the python-wrapper
     ;; because we need libpython3.3m.so
@@ -8761,8 +8924,7 @@ Python.  It generates C++ code and a Makefile."))
         (base32
          "1cppm0pa9aqgsbkq130lskrzmrvjs5vpiavjjbhpz2fdw52w8251"))))
     (arguments
-     ;; Rope is currently python-2 only.
-     ;; https://github.com/python-rope/rope/issues/57
+     ;; Rope has only partial python3 support, see `python-rope'
      `(#:python ,python-2))
     (build-system python-build-system)
     (native-inputs
@@ -8775,6 +8937,16 @@ and parameters in Python 2 source code.  These refactorings can also be applied
 to occurrences in strings and comments.")
     (license license:gpl2)))
 
+(define-public python-rope
+  (package
+    (inherit python2-rope)
+    (name "python-rope")
+    (arguments `(#:python ,python-wrapper
+                 ;; XXX: Only partial python3 support, results in some failing
+                 ;; tests: <https://github.com/python-rope/rope/issues/247>.
+                 #:tests? #f))
+    (properties `((python2-variant . ,(delay python2-rope))))))
+
 (define-public python-py3status
   (package
     (name "python-py3status")
diff --git a/gnu/packages/qt.scm b/gnu/packages/qt.scm
index 2e8f2d1135..6775a991b9 100644
--- a/gnu/packages/qt.scm
+++ b/gnu/packages/qt.scm
@@ -2173,6 +2173,11 @@ different kinds of sliders, and much more.")
     (arguments
      `(#:tests? #f ; no apparent tests; it might be necessary to set
                    ; ENABLE_API_TESTS, see CMakeLists.txt
+
+       ;; Parallel builds fail due to a race condition:
+       ;; <https://bugs.gnu.org/34062>.
+       #:parallel-build? #f
+
        #:configure-flags (list ;"-DENABLE_API_TESTS=TRUE"
                                "-DPORT=Qt"
                                "-DUSE_LIBHYPHEN=OFF"
diff --git a/gnu/packages/search.scm b/gnu/packages/search.scm
index ed616e739f..8ee6b4d32f 100644
--- a/gnu/packages/search.scm
+++ b/gnu/packages/search.scm
@@ -47,14 +47,14 @@
 (define-public xapian
   (package
     (name "xapian")
-    (version "1.4.9")
+    (version "1.4.10")
     ;; Note: When updating Xapian, remember to update xapian-bindings below.
     (source (origin
               (method url-fetch)
               (uri (string-append "https://oligarchy.co.uk/xapian/" version
                                   "/xapian-core-" version ".tar.xz"))
               (sha256
-               (base32 "1k7m7m9jld96k16ansfw2w3c354pvd8ibhnrb6dw012g06fw7sfd"))))
+               (base32 "1f4vf1w1yvsn9mn462q6snc8wkmfpifp8wrlzs4aqi45w0kr6rk8"))))
     (build-system gnu-build-system)
     (inputs `(("zlib" ,zlib)
               ("util-linux" ,util-linux)))
@@ -92,7 +92,7 @@ rich set of boolean query operators.")
                                   "/xapian-bindings-" version ".tar.xz"))
               (sha256
                (base32
-                "0ll3z3418r7bzxs4kyini2cbci5xl8i5scl3wyx88s2v4ak56bcz"))))
+                "0zqx5gcwm2mhx41fnfx30z9c31x96g5pskyrmx3c556mnklfpask"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags '("--with-python3")
diff --git a/gnu/packages/skarnet.scm b/gnu/packages/skarnet.scm
index 6546d40597..9ba37b0f19 100644
--- a/gnu/packages/skarnet.scm
+++ b/gnu/packages/skarnet.scm
@@ -2,7 +2,7 @@
 ;;; Copyright © 2015 Claes Wallin <claes.wallin@greatsinodevelopment.com>
 ;;; Copyright © 2016 Eric Le Bihan <eric.le.bihan.dev@free.fr>
 ;;; Copyright © 2017 Z. Ren <zren@dlut.edu.cn>
-;;; Copyright © 2018 Tobias Geerinckx-Rice <me@tobias.gr>
+;;; Copyright © 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr>
 ;;;
 ;;; This file is part of GNU Guix.
 ;;;
@@ -105,7 +105,7 @@ complexity.")))
 (define-public s6
   (package
    (name "s6")
-   (version "2.7.2.1")
+   (version "2.7.2.2")
    (source
     (origin
      (method url-fetch)
@@ -113,7 +113,7 @@ complexity.")))
                          version ".tar.gz"))
      (sha256
       (base32
-       "0vyl4wr2l4mp9ams0dyg224qxhl8ksxsv2shs6606lhhp9g1rb6b"))))
+       "0psjmfidjdciswakw9agzzniqfmhrr21765m0q77kwxg7iisgpsq"))))
    (build-system gnu-build-system)
    (inputs `(("skalibs" ,skalibs)
              ("execline" ,execline)))
diff --git a/gnu/packages/ssh.scm b/gnu/packages/ssh.scm
index 682989ae29..1928ea7634 100644
--- a/gnu/packages/ssh.scm
+++ b/gnu/packages/ssh.scm
@@ -456,6 +456,9 @@ TCP, not the SSH protocol.")
                 "0rgavbzw7jrs5wslxm0dnwx2m409yzxd9hazd92r7kx8xikr3yzj"))))
     (build-system gnu-build-system)
     (arguments `(#:tests? #f)) ; there is no "make check" or anything similar
+    ;; TODO: Investigate unbundling libtommath and libtomcrypt or at least
+    ;; cherry-picking important bug fixes from them. See <bugs.gnu.org/24674>
+    ;; for more information.
     (inputs `(("zlib" ,zlib)))
     (synopsis "Small SSH server and client")
     (description "Dropbear is a relatively small SSH server and
diff --git a/gnu/packages/suckless.scm b/gnu/packages/suckless.scm
index 6edeea6cac..d15fdbaddd 100644
--- a/gnu/packages/suckless.scm
+++ b/gnu/packages/suckless.scm
@@ -78,13 +78,13 @@ a custom raw video format with a simple container.")
 (define-public dwm
   (package
     (name "dwm")
-    (version "6.1")
+    (version "6.2")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://dl.suckless.org/dwm/dwm-"
                                  version ".tar.gz"))
              (sha256
-              (base32 "1zkmwb6df6m254shx06ly90c0q4jl70skk1pvkixpb7hcxhwbxn2"))))
+              (base32 "03hirnj8saxnsfqiszwl2ds7p0avg20izv9vdqyambks00p2x44p"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f
@@ -137,14 +137,14 @@ optimising the environment for the application in use and the task performed.")
 (define-public dmenu
   (package
     (name "dmenu")
-    (version "4.8")
+    (version "4.9")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://dl.suckless.org/tools/dmenu-"
                                   version ".tar.gz"))
               (sha256
                (base32
-                "0qfvfrj10xlwd9hkvb57wshryan65bl6423h0qhiw1h76rf5lqgy"))))
+                "0ia9nqr83bv6x247q30bal0v42chcj9qcjgv59xs6xj46m7iz5xk"))))
     (build-system gnu-build-system)
     (arguments
      '(#:tests? #f ; no tests
diff --git a/gnu/packages/syncthing.scm b/gnu/packages/syncthing.scm
index 92eda1c9b1..e4f8c09016 100644
--- a/gnu/packages/syncthing.scm
+++ b/gnu/packages/syncthing.scm
@@ -30,7 +30,7 @@
 (define-public syncthing
   (package
     (name "syncthing")
-    (version "1.0.0")
+    (version "1.0.1")
     (source (origin
               (method url-fetch)
               (uri (string-append "https://github.com/syncthing/syncthing"
@@ -38,7 +38,7 @@
                                   "/syncthing-source-v" version ".tar.gz"))
               (sha256
                (base32
-                "0992nsdiw374pbh1dywg7c2jijzy4xmsv0b7q5p76xn2yyg5yhr7"))
+                "0gas07lxm5d2c21axgcs90r779rj9sk3jymnnffxz457rvpr2qn3"))
               ;; Since the update to Go 1.11, Go programs have been keeping
               ;; spurious references to all their dependencies:
               ;; <https://bugs.gnu.org/33620>.
diff --git a/gnu/packages/tls.scm b/gnu/packages/tls.scm
index fab0e72278..e9ee79e508 100644
--- a/gnu/packages/tls.scm
+++ b/gnu/packages/tls.scm
@@ -531,13 +531,13 @@ netcat implementation that supports TLS.")
   (package
     (name "python-acme")
     ;; Remember to update the hash of certbot when updating python-acme.
-    (version "0.30.2")
+    (version "0.31.0")
     (source (origin
               (method url-fetch)
               (uri (pypi-uri "acme" version))
               (sha256
                (base32
-                "1wmqxrl4w9w79jd16bmxp8g3xbrx3az4137zbip8x44zrrzmnni9"))))
+                "1gxjv09c695lj8swspa390nch117i60qkrgy135383vfk00jsp3y"))))
     (build-system python-build-system)
     (arguments
      `(#:phases
@@ -588,7 +588,7 @@ netcat implementation that supports TLS.")
               (uri (pypi-uri name version))
               (sha256
                (base32
-                "0vkpqwps1c8ja140kiiz2cws9hqjrbkx58wbji3qxv9cap5qfi2k"))))
+                "0wq4jgyzli684h154w26xplp0fzyks2vlrnmhafhyb0h1bw9cc8c"))))
     (build-system python-build-system)
     (arguments
      `(,@(substitute-keyword-arguments (package-arguments python-acme)
diff --git a/gnu/packages/upnp.scm b/gnu/packages/upnp.scm
index e7da5b30c0..9d534e5799 100644
--- a/gnu/packages/upnp.scm
+++ b/gnu/packages/upnp.scm
@@ -32,14 +32,14 @@
 (define-public miniupnpc
   (package
     (name "miniupnpc")
-    (version "2.1")
+    (version "2.1.20190210")
     (source
      (origin
        (method url-fetch)
        (uri (string-append "https://miniupnp.tuxfamily.org/files/"
                            name "-" version ".tar.gz"))
        (sha256
-        (base32 "1ik440yspbp3clr4m01xsl9skwyrzcvzb5nbm3i0g9x53vhbb7z1"))))
+        (base32 "05w8p51yd71ksapajb9nag464ncakk72v9dxr01y168wix707d49"))))
     (build-system gnu-build-system)
     (native-inputs
      `(("python" ,python-2)))
diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm
index a5a684c67e..ece66a3745 100644
--- a/gnu/packages/video.scm
+++ b/gnu/packages/video.scm
@@ -683,14 +683,14 @@ standards (MPEG-2, MPEG-4 ASP/H.263, MPEG-4 AVC/H.264, and VC-1/VMW3).")
 (define-public ffmpeg
   (package
     (name "ffmpeg")
-    (version "4.1")
+    (version "4.1.1")
     (source (origin
              (method url-fetch)
              (uri (string-append "https://ffmpeg.org/releases/ffmpeg-"
                                  version ".tar.xz"))
              (sha256
               (base32
-               "150rrm549fy1x71c9whmyi5knyd9sliwvmcsm438bdgg4v8c93m3"))))
+               "11id9pm4azfrhpa4vr2yaw31dzgd55kl1zsxwn24sczx9n14jdrp"))))
     (build-system gnu-build-system)
     (inputs
      `(("fontconfig" ,fontconfig)
@@ -992,7 +992,7 @@ videoformats depend on the configuration flags of ffmpeg.")
        ("libva" ,libva)
        ("libvdpau" ,libvdpau)
        ("libvorbis" ,libvorbis)
-       ("libvpx" ,libvpx)
+       ("libvpx" ,libvpx-1.7)
        ("libtheora" ,libtheora)
        ("libx264" ,libx264)
        ("libxext" ,libxext)
@@ -2877,7 +2877,17 @@ programmers to access a standard API to open and decompress media files.")
          (add-before 'configure 'fix-ldflags
            (lambda _
              (setenv "LDFLAGS" "-pthread")
-             #t)))))
+             #t))
+         (add-after 'unpack 'fix-boost-headers
+               (lambda _
+                 (substitute*
+                     '("src/subtitles_provider_libass.cpp"
+                       "src/colour_button.cpp"
+                       "src/video_provider_dummy.cpp"
+                       "./src/video_frame.cpp")
+                   (("#include <boost/gil/gil_all.hpp>")
+                    "#include <boost/gil.hpp>"))
+                 #t)))))
     (inputs
      `(("boost" ,boost)
        ("desktop-file-utils" ,desktop-file-utils)
diff --git a/gnu/packages/vim.scm b/gnu/packages/vim.scm
index 53d028681d..8da08c41b0 100644
--- a/gnu/packages/vim.scm
+++ b/gnu/packages/vim.scm
@@ -1,6 +1,6 @@
 ;;; GNU Guix --- Functional package management for GNU
 ;;; Copyright © 2013 Cyril Roelandt <tipecaml@gmail.com>
-;;; Copyright © 2016, 2017, 2018 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2017, 2018, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016, 2017 Nils Gillmann <ng0@n0.is>
 ;;; Copyright © 2017 Ricardo Wurmus <rekado@elephly.net>
 ;;; Copyright © 2017 Marius Bakke <mbakke@fastmail.com>
@@ -519,7 +519,7 @@ commit or run any Git arbitrary command.")
 (define-public vim-airline
   (package
     (name "vim-airline")
-    (version "0.9")
+    (version "0.10")
     (source
      (origin
        (method git-fetch)
@@ -529,7 +529,7 @@ commit or run any Git arbitrary command.")
        (file-name (git-file-name name version))
        (sha256
         (base32
-         "0hq3304rhakx7x1v7wll7gxinmfz6561bq97qpj8jrk19rhcab75"))))
+         "0k3c6p3xy6514n1n347ci4q9xjm9wwqirpdysam6f7r39crgmfhd"))))
     (build-system gnu-build-system)
     (arguments
      `(#:tests? #f
diff --git a/gnu/packages/virtualization.scm b/gnu/packages/virtualization.scm
index f5e4540329..8a5af2e8ea 100644
--- a/gnu/packages/virtualization.scm
+++ b/gnu/packages/virtualization.scm
@@ -847,15 +847,17 @@ monitor/GPU.")
 (define-public runc
   (package
     (name "runc")
-    (version "1.0.0-rc5")
+    (version "1.0.0-rc6")
     (source (origin
               (method url-fetch)
               (uri (string-append
                     "https://github.com/opencontainers/runc/releases/"
                     "download/v" version "/runc.tar.xz"))
+              (file-name (string-append name "-" version ".tar.xz"))
+              (patches (search-patches "runc-CVE-2019-5736.patch"))
               (sha256
                (base32
-                "081avdzwnqpk368wbaihlzsypaxpj42d7699h7jgp0fks14x4103"))))
+                "1c7832dq70slkjh8qp2civ1wxhhdd2hrx84pq7db1mmqc9fdr3cc"))))
     (build-system go-build-system)
     (arguments
      '(#:import-path "github.com/opencontainers/runc"
diff --git a/gnu/packages/web.scm b/gnu/packages/web.scm
index 158d542d7f..f7f8e157e5 100644
--- a/gnu/packages/web.scm
+++ b/gnu/packages/web.scm
@@ -164,17 +164,17 @@ and its related documentation.")
     (name "mod-wsgi")
     (version "4.5.22")
     (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/GrahamDumpleton/mod_wsgi/archive/"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/GrahamDumpleton/mod_wsgi.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0n1yhmrfp8mjbsngmyjl937c6rc0069p6wdi1lknrbn1q42hzw6q"))))
+                "1q90xw2cbhka5gcd6yc69iir73x4gm7fm75qpkins2ryfl6w1q3f"))))
     (build-system gnu-build-system)
     (arguments
-     '(#:tests? #f ;; TODO: Can't figure out if there are tests
+     '(#:tests? #f                 ; TODO: can't figure out if there are tests
        #:make-flags (list
                      (string-append "DESTDIR="
                                     (assoc-ref %outputs "out"))
@@ -413,16 +413,16 @@ APIs.")
     (version "1.1.0")
     (source
      (origin
-       (method url-fetch)
-       (uri (string-append "https://github.com/gnosek/fcgiwrap/"
-                           "archive/" version ".tar.gz"))
-       (file-name (string-append name "-" version ".tar.gz"))
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://github.com/gnosek/fcgiwrap.git")
+             (commit version)))
+       (file-name (git-file-name name version))
        (sha256
-        (base32
-         "07y6s4mm86cv7p1ljz94sxnqa89y9amn3vzwsnbq5hrl4vdy0zac"))))
+        (base32 "1ryw66h9aazi83amk8l7ha8k5g0c7qvk5g6jv376a1ws9xk2qw6f"))))
     (build-system gnu-build-system)
     (arguments
-     `(#:tests? #f ; no tests included
+     `(#:tests? #f                      ; no tests included
        #:make-flags (list "CC=gcc")))
     (native-inputs
      `(("autoconf" ,autoconf)
@@ -620,17 +620,17 @@ project)
     (name "qjson")
     (version "0.9.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append
-                    "https://github.com/flavio/qjson/archive/"
-                    version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/flavio/qjson.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1m0h4rajj99hv9w4i381a8x81lxiv167lxk10ncvphpkfxs624p8"))))
+                "1f4wnxzx0qdmxzc7hqk28m0sva7z9p9xmxm6aifvjlp0ha6pmfxs"))))
     (build-system cmake-build-system)
     (arguments
-     ;; The tests require a X server
+     ;; The tests require a running X server.
      `(#:configure-flags '("-DQJSON_BUILD_TESTS=ON"
                            "-DCMAKE_CXX_FLAGS=-std=gnu++11 -fPIC")
        #:phases
@@ -747,14 +747,14 @@ current version of any major web browser.")
     (name "rapidjson")
     (version "1.1.0")
     (source (origin
-             (method url-fetch)
-             (uri (string-append
-                   "https://github.com/miloyip/rapidjson/archive/v"
-                   version ".tar.gz"))
-             (file-name (string-append name "-" version ".tar.gz"))
+             (method git-fetch)
+             (uri (git-reference
+                   (url "https://github.com/miloyip/rapidjson.git")
+                   (commit (string-append "v" version))))
+             (file-name (git-file-name name version))
              (sha256
               (base32
-               "13nrpvw8f1wx0ga7svbzld7pgrv8l172nangpipnj7jaf0lysz5z"))
+               "1jixgb8w97l9gdh3inihz7avz7i770gy2j2irvvlyrq3wi41f5ab"))
              (modules '((guix build utils)))
              (snippet
               '(begin
@@ -786,13 +786,14 @@ style API.")
     (name "libyajl")
     (version "2.1.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/lloyd/yajl/"
-                                  "archive/" version ".tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/lloyd/yajl.git")
+                    (commit version)))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "0nmcqpaiq4pv7dymyg3n3jsd57yhp5npxl26a1hzw3m3lmj37drz"))))
+                "00yj06drb6izcxfxfqlhimlrb089kka0w0x8k27pyzyiq7qzcvml"))))
     (build-system cmake-build-system)
     (arguments
      '(#:phases
@@ -992,13 +993,14 @@ of people.")
     (name "websockify")
     (version "0.8.0")
     (source (origin
-              (method url-fetch)
-              (uri (string-append "https://github.com/novnc/websockify/archive/v"
-                                  version "/archive.tar.gz"))
-              (file-name (string-append name "-" version ".tar.gz"))
+              (method git-fetch)
+              (uri (git-reference
+                    (url "https://github.com/novnc/websockify.git")
+                    (commit (string-append "v" version))))
+              (file-name (git-file-name name version))
               (sha256
                (base32
-                "1kjq6gibsvbb6zx5gi8hgh7110x62pbwcqkwapf3k7s27w5y907h"))))
+                "0pcic8qs0gdwrfjgfaf893jyddaw97wcjm2mmvwn0xyhmy8mbmw1"))))
     (build-system python-build-system)
     (arguments
      `(#:tests? #f)) ; FIXME: 2 out of 6 tests fail with "ImportError: No module
@@ -4779,13 +4781,13 @@ deployments.")
   (package
     (name "varnish")
     (home-page "https://varnish-cache.org/")
-    (version "6.0.0")
+    (version "6.1.1")
     (source (origin
               (method url-fetch)
               (uri (string-append home-page "_downloads/varnish-" version ".tgz"))
               (sha256
                (base32
-                "1vhbdch33m6ig4ijy57zvrramhs9n7cba85wd8rizgxjjnf87cn7"))))
+                "0gf9hzzrr1lndbbqi8cwlfasi7l517cy3nbgna88i78lm247rvp0"))))
     (build-system gnu-build-system)
     (arguments
      `(#:configure-flags (list (string-append "LDFLAGS=-Wl,-rpath=" %output "/lib")
@@ -4793,6 +4795,10 @@ deployments.")
                                (string-append "PTHREAD_CC="
                                               (assoc-ref %build-inputs "gcc")
                                               "/bin/gcc")
+                               ;; XXX: Disable PCRE-JIT to work around a segmentation
+                               ;; fault when using jemalloc 5.x:
+                               ;; <https://github.com/varnishcache/varnish-cache/issues/2817>
+                               "--disable-pcre-jit"
                                "--localstatedir=/var")
        #:phases
        (modify-phases %standard-phases
@@ -4827,6 +4833,7 @@ deployments.")
                #t))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)
+       ("python-sphinx" ,python-sphinx)
        ("rst2man" ,python-docutils)))
     (inputs
      `(("jemalloc" ,jemalloc)
diff --git a/gnu/packages/wm.scm b/gnu/packages/wm.scm
index fd89df0c16..f1f3c25391 100644
--- a/gnu/packages/wm.scm
+++ b/gnu/packages/wm.scm
@@ -5,7 +5,7 @@
 ;;; Copyright © 2015 xd1le <elisp.vim@gmail.com>
 ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org>
 ;;; Copyright © 2016 Danny Milosavljevic <dannym@scratchpost.org>
-;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il>
+;;; Copyright © 2016, 2019 Efraim Flashner <efraim@flashner.co.il>
 ;;; Copyright © 2016 Al McElrath <hello@yrns.org>
 ;;; Copyright © 2016 Carlo Zancanaro <carlo@zancanaro.id.au>
 ;;; Copyright © 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
@@ -675,20 +675,27 @@ drags, snap-to-border support, and virtual desktops.")
      `(#:make-flags '("CPPFLAGS=-U__TIME__") ;ugly, but for reproducibility
        #:phases
        (modify-phases %standard-phases
-         (add-after
-          'install 'install-xsession
-          (lambda _
-            (let ((xsessions (string-append %output "/share/xsessions")))
-              (mkdir-p xsessions)
-              (call-with-output-file
-                  (string-append xsessions "/fluxbox.desktop")
-                (lambda (port)
-                  (format port "~
-                    [Desktop Entry]~@
-                    Name=~a~@
-                    Comment=~a~@
-                    Exec=~a/bin/startfluxbox~@
-                    Type=Application~%" ,name ,synopsis %output)))))))))
+         (add-after 'install 'install-vim-files
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (syntax (string-append out "/share/vim/vimfiles/syntax")))
+               (copy-recursively "3rd/vim/vim/syntax" syntax)
+               #t)))
+         (add-after 'install 'install-xsession
+           (lambda* (#:key outputs #:allow-other-keys)
+             (let* ((out (assoc-ref outputs "out"))
+                    (xsessions (string-append out "/share/xsessions")))
+               (mkdir-p xsessions)
+               (call-with-output-file
+                 (string-append xsessions "/fluxbox.desktop")
+                 (lambda (port)
+                   (format port "~
+                     [Desktop Entry]~@
+                     Name=~a~@
+                     Comment=~a~@
+                     Exec=~a/bin/startfluxbox~@
+                     Type=Application~%" ,name ,synopsis out)))
+               #t))))))
     (native-inputs
      `(("pkg-config" ,pkg-config)))
     (inputs
diff --git a/gnu/packages/xdisorg.scm b/gnu/packages/xdisorg.scm
index 7613accb4f..5359c4c9d9 100644
--- a/gnu/packages/xdisorg.scm
+++ b/gnu/packages/xdisorg.scm
@@ -302,7 +302,7 @@ following the mouse.")
     (source (origin
               (method url-fetch)
               (uri (string-append
-                    "http://cairographics.org/releases/pixman-"
+                    "https://www.cairographics.org/releases/pixman-"
                     version ".tar.gz"))
               (sha256
                (base32
diff --git a/gnu/packages/xorg.scm b/gnu/packages/xorg.scm
index bf7a4050a3..de8d784e64 100644
--- a/gnu/packages/xorg.scm
+++ b/gnu/packages/xorg.scm
@@ -6366,16 +6366,16 @@ output.")
 (define-public console-setup
   (package
     (name "console-setup")
-    (version "1.188")
-    (source (origin
-              (method git-fetch)
-              (uri (git-reference
-                    (url "https://salsa.debian.org/installer-team/console-setup.git")
-                    (commit version)))
-              (sha256
-               (base32
-                "1741mg2wc5wa63clkijmv04zd6jxhc7c6aq7mkhqw1r4dhfhih19"))
-              (file-name (git-file-name name version))))
+    (version "1.189")
+    (source
+     (origin
+       (method git-fetch)
+       (uri (git-reference
+             (url "https://salsa.debian.org/installer-team/console-setup.git")
+             (commit version)))
+       (sha256
+        (base32 "09rfnnhwjm98im711v6jrgl49iy5n1b26x12zzk5rw6g1667mz86"))
+       (file-name (git-file-name name version))))
     (build-system gnu-build-system)
     (arguments
      '(#:make-flags
diff --git a/gnu/services/desktop.scm b/gnu/services/desktop.scm
index fbeabf1162..a93fa3c356 100644
--- a/gnu/services/desktop.scm
+++ b/gnu/services/desktop.scm
@@ -39,6 +39,7 @@
   #:use-module (gnu system pam)
   #:use-module (gnu packages glib)
   #:use-module (gnu packages admin)
+  #:use-module (gnu packages cups)
   #:use-module (gnu packages freedesktop)
   #:use-module (gnu packages gnome)
   #:use-module (gnu packages xfce)
@@ -802,6 +803,21 @@ accountsservice web site} for more information."
 
 
 ;;;
+;;; cups-pk-helper service.
+;;;
+
+(define cups-pk-helper-service-type
+  (service-type
+   (name 'cups-pk-helper)
+   (description
+    "PolicyKit helper to configure CUPS with fine-grained privileges.")
+   (extensions
+    (list (service-extension dbus-root-service-type list)
+          (service-extension polkit-service-type list)))
+   (default-value cups-pk-helper)))
+
+
+;;;
 ;;; GNOME desktop service.
 ;;;
 
@@ -990,6 +1006,7 @@ as expected.")))
          (udisks-service)
          (upower-service)
          (accountsservice-service)
+         (service cups-pk-helper-service-type)
          (colord-service)
          (geoclue-service)
          (service polkit-service-type)
diff --git a/gnu/services/docker.scm b/gnu/services/docker.scm
index 09fe3cc1c3..8b5edf5cb0 100644
--- a/gnu/services/docker.scm
+++ b/gnu/services/docker.scm
@@ -71,13 +71,16 @@
            (documentation "Docker daemon.")
            (provision '(dockerd))
            (requirement '(containerd
+                          dbus-system
+                          elogind
                           file-system-/sys/fs/cgroup/blkio
                           file-system-/sys/fs/cgroup/cpu
                           file-system-/sys/fs/cgroup/cpuset
                           file-system-/sys/fs/cgroup/devices
                           file-system-/sys/fs/cgroup/memory
                           ; TODO: file-system-/sys/fs/cgroup/pids
-                          ))
+                          networking
+                          udev))
            (start #~(make-forkexec-constructor
                      (list (string-append #$docker "/bin/dockerd")
                            "-p" "/var/run/docker.pid")
diff --git a/gnu/services/xorg.scm b/gnu/services/xorg.scm
index d66254c03d..1efb275794 100644
--- a/gnu/services/xorg.scm
+++ b/gnu/services/xorg.scm
@@ -657,7 +657,7 @@ makes the good ol' XlockMore usable."
                      "WaylandEnable=false\n"
                      "\n"
                      "[debug]\n"
-                     "Enable=true\n"
+                     "#Enable=true\n"
                      "\n"
                      "[security]\n"
                      "#DisallowTCP=true\n"
diff --git a/gnu/system/vm.scm b/gnu/system/vm.scm
index 088b582bcd..e09c687a04 100644
--- a/gnu/system/vm.scm
+++ b/gnu/system/vm.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018 Ludovic Courtès <ludo@gnu.org>
+;;; Copyright © 2013, 2014, 2015, 2016, 2017, 2018, 2019 Ludovic Courtès <ludo@gnu.org>
 ;;; Copyright © 2016 Christopher Allan Webber <cwebber@dustycloud.org>
 ;;; Copyright © 2016, 2017 Leo Famulari <leo@famulari.name>
 ;;; Copyright © 2017 Mathieu Othacehe <m.othacehe@gmail.com>
@@ -134,7 +134,9 @@
   ;; Guile-Gcrypt, Guile-SQLite3, and their propagated inputs.
   (append-map (lambda (package)
                 (cons package
-                      (package-transitive-propagated-inputs package)))
+                      (match (package-transitive-propagated-inputs package)
+                        (((labels packages) ...)
+                         packages))))
               (list guile-gcrypt guile-sqlite3)))
 
 (define* (expression->derivation-in-linux-vm name exp
author	Marius Bakke <mbakke@fastmail.com>	2019-02-14 00:20:28 +0100
committer	Marius Bakke <mbakke@fastmail.com>	2019-02-14 00:20:28 +0100
commit	6901878894e9c6405fa811c512a32f448e8b9fa2 (patch)
tree	5b04c4234f4022533692c36a83047ec9801aada9 /gnu
parent	baf766a7ff9db45c707b4539176f2143fbd90efd (diff)
parent	58c6a93d9d60660d8425d8c52d4b73a42d4a5b55 (diff)
download	guix-6901878894e9c6405fa811c512a32f448e8b9fa2.tar.gz