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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2022-06-22 15:57:41 +0200
committerRicardo Wurmus <rekado@elephly.net>2022-10-27 16:40:18 +0200
commitaef2425666b47f5b9df24db2e0193e582d0782a5 (patch)
tree91185ae6a5a5a2c3e082231372d6e32b7ddd276e /gnu
parent695d7720efbe72f03227a84ce557eb1a4f37d4fa (diff)
downloadguix-aef2425666b47f5b9df24db2e0193e582d0782a5.tar.gz
gnu: Add r-aseb.
* gnu/packages/bioconductor.scm (r-aseb): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm27
1 files changed, 27 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2ace372c58..b8535250f9 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2317,6 +2317,33 @@ reproducible gene expression signatures capable of accurately distinguishing
 tumor samples from healthy controls.")
     (license license:artistic2.0)))
 
+(define-public r-aseb
+  (package
+    (name "r-aseb")
+    (version "1.40.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "ASEB" version))
+              (sha256
+               (base32
+                "1i0r4vimk6is4j4rr14ajp8papznpmmr0bhwd96s8w53cqdqph7p"))))
+    (properties `((upstream-name . "ASEB")))
+    (build-system r-build-system)
+    (home-page "https://bioconductor.org/packages/ASEB")
+    (synopsis "Predict acetylated lysine sites")
+    (description
+     "ASEB is an R package to predict lysine sites that can be acetylated by a
+specific @dfn{KAT} (K-acetyl-transferases) family.  Lysine acetylation is a
+well-studied posttranslational modification on kinds of proteins.  About four
+thousand lysine acetylation sites and over 20 lysine KATs have been
+identified.  However, which KAT is responsible for a given protein or lysine
+site acetylation is mostly unknown.  In this package, we use a
+@dfn{GSEA}-like (Gene Set Enrichment Analysis) method to make predictions.
+GSEA method was developed and successfully used to detect coordinated
+expression changes and find the putative functions of the long non-coding
+RNAs.")
+    (license license:gpl3+)))
+
 (define-public r-asgsca
   (package
     (name "r-asgsca")