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| author | Christopher Baines <mail@cbaines.net> | 2021-05-29 01:21:14 +0100 |
|---|---|---|
| committer | Christopher Baines <mail@cbaines.net> | 2021-05-29 01:21:14 +0100 |
| commit | 6417b97c7e10de8592ac9fda15774ee711d3dc25 (patch) | |
| tree | f09537a724cc332818b5408ca7cb78dd2d179545 /gnu | |
| parent | 12489ee005c3c27b99388d5866bdbb3ca28d68e1 (diff) | |
| download | guix-6417b97c7e10de8592ac9fda15774ee711d3dc25.tar.gz | |
Revert "gnu: Add mosaicatcher."
mosaicatcher-unbundle-htslib.patch is missing. This reverts commit b1ae0f30d856503fa311d380584a6d7c80559332.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 0 insertions, 40 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 2a7443314a..f38c0c07ef 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6170,46 +6170,6 @@ Roche 454, Ion Torrent and Pacific BioSciences SMRT.") ;; 2. MD5 implementation - RSA Data Security, RFC 1321 (license (list license:gpl2+ license:public-domain))))) -(define-public mosaicatcher - (package - (name "mosaicatcher") - (version "0.3.1") - (source (origin - ;; There are no release tarballs nor tags. - (method git-fetch) - (uri (git-reference - (url "https://github.com/friendsofstrandseq/mosaicatcher") - (commit (string-append version "-dev")))) - (file-name (git-file-name name version)) - (sha256 - (base32 - "1n2s5wvvj2y0vfgjkg1q11xahpbagxz7h2vf5q7qyy25s12kbzbd")) - (patches (search-patches "mosaicatcher-unbundle-htslib.patch")))) - (build-system cmake-build-system) - (arguments - `(#:tests? #false ; there are no tests - #:phases - (modify-phases %standard-phases - (add-after 'unpack 'chdir - (lambda _ (chdir "src"))) - (replace 'install - (lambda* (#:key inputs outputs #:allow-other-keys) - (let* ((target (assoc-ref outputs "out")) - (bin (string-append target "/bin")) - (share (string-append target "/share/mosaicatcher"))) - (install-file "mosaic" bin) - (mkdir-p share) - (copy-recursively "../R" share))))))) - (inputs - `(("boost" ,boost) - ("htslib" ,htslib))) - (home-page "https://github.com/friendsofstrandseq/mosaicatcher") - (synopsis "Count and classify Strand-seq reads") - (description - "Mosaicatcher counts Strand-seq reads and classifies strand states of -each chromosome in each cell using a Hidden Markov Model.") - (license license:expat))) - (define-public ngs-sdk (package (name "ngs-sdk") |