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authorMădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>2023-02-02 03:26:48 +0100
committerRicardo Wurmus <rekado@elephly.net>2023-02-07 10:29:59 +0100
commit27178151c3d0856edaf7de85fbfec2421656ea55 (patch)
treedc3f8948d6b328cd0e3e01e269c59c13777e6fe5 /gnu
parent8f09b385d9184f009d02690e4382d54ee827e346 (diff)
downloadguix-27178151c3d0856edaf7de85fbfec2421656ea55.tar.gz
gnu: Add r-glad.
* gnu/packages/bioconductor.scm (r-glad): New variable.
Diffstat (limited to 'gnu')
-rw-r--r--gnu/packages/bioconductor.scm24
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1a7c53257b..703edb3524 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6145,6 +6145,30 @@ GenomicRanges package defines general purpose containers for storing and
 manipulating genomic intervals and variables defined along a genome.")
     (license license:artistic2.0)))
 
+(define-public r-glad
+  (package
+    (name "r-glad")
+    (version "2.62.0")
+    (source (origin
+              (method url-fetch)
+              (uri (bioconductor-uri "GLAD" version))
+              (sha256
+               (base32
+                "0gb52ic5r6nkgm2ynm174vcvbmkbhhjgv71lsmxpxzcsb6rr7qj6"))))
+    (properties `((upstream-name . "GLAD")))
+    (build-system r-build-system)
+    (inputs (list gsl))
+    (propagated-inputs (list r-aws))
+    (native-inputs (list pkg-config))
+    (home-page "http://bioinfo.curie.fr")
+    (synopsis "Gain and loss analysis of DNA")
+    (description
+     "This package helps with the analysis of array @acronym{CGH, comparative
+genomic hybridization} data by detecting of the breakpoints in the genomic
+profiles and assignment of a status (gain, normal or loss) to each chromosomal
+regions identified.")
+    (license license:gpl2)))
+
 (define-public r-gostats
   (package
     (name "r-gostats")