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| author | Ricardo Wurmus <ricardo.wurmus@mdc-berlin.de> | 2018-07-04 17:43:33 +0200 |
|---|---|---|
| committer | Ricardo Wurmus <rekado@elephly.net> | 2018-07-05 15:08:44 +0200 |
| commit | 2cc511083239d5579aafef6a9dea03f36a1c1b2b (patch) | |
| tree | 03321b8a4b095935517f5149b17b560f648345a4 /gnu | |
| parent | fa6975996384c8ae1287f8673a59bda3d86a1532 (diff) | |
| download | guix-2cc511083239d5579aafef6a9dea03f36a1c1b2b.tar.gz | |
gnu: Add r-genelendatabase.
* gnu/packages/bioconductor.scm (r-genelendatabase): New variable.
Diffstat (limited to 'gnu')
| -rw-r--r-- | gnu/packages/bioconductor.scm | 29 |
1 files changed, 29 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a6a8216ccb..5e08143f30 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -167,6 +167,35 @@ Repeats Finder (TRF mask). Only the AGAPS and AMB masks are \"active\" by default." ) (license license:artistic2.0))) +(define-public r-genelendatabase + (package + (name "r-genelendatabase") + (version "1.16.0") + (source + (origin + (method url-fetch) + ;; We cannot use bioconductor-uri here because this tarball is + ;; located under "data/experiment/" instead of "bioc/". + (uri (string-append "https://bioconductor.org/packages/" + "release/data/experiment/src/contrib" + "/geneLenDataBase_" version ".tar.gz")) + (sha256 + (base32 + "07mmmn53kb7v14msc13dsbm8ghssbvwcrhifrk15hn37bw2p4ja5")))) + (properties + `((upstream-name . "geneLenDataBase"))) + (build-system r-build-system) + (propagated-inputs + `(("r-rtracklayer" ,r-rtracklayer) + ("r-genomicfeatures" ,r-genomicfeatures))) + (home-page "https://bioconductor.org/packages/geneLenDataBase/") + (synopsis "Lengths of mRNA transcripts for a number of genomes") + (description + "This package provides the lengths of mRNA transcripts for a number of +genomes and gene ID formats, largely based on the UCSC table browser.") + (license license:lgpl2.0+))) + + (define-public r-hpar (package (name "r-hpar") |