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| -rw-r--r-- | gnu/packages/bioconductor.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index c27a344311..71037a86e2 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -13064,6 +13064,38 @@ factors for each cell, along with the usual metadata for genes and libraries.") (license license:gpl3))) +(define-public r-singler + (package + (name "r-singler") + (version "1.8.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "SingleR" version)) + (sha256 + (base32 "19lsn3cpghkhfbx4jqgbwwrnacrl7vj3r91ymd1gk02c9pn5dmci")))) + (properties `((upstream-name . "SingleR"))) + (build-system r-build-system) + (propagated-inputs + (list r-beachmat + r-biocneighbors + r-biocparallel + r-biocsingular + r-delayedarray + r-delayedmatrixstats + r-matrix + r-rcpp + r-s4vectors + r-summarizedexperiment)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/LTLA/SingleR") + (synopsis "Reference-based single-cell RNA-seq annotation") + (description + "This package performs unbiased cell type recognition from single-cell +RNA sequencing data, by leveraging reference transcriptomic datasets of pure +cell types to infer the cell of origin of each single cell independently.") + (license license:gpl3))) + (define-public r-scuttle (package (name "r-scuttle") |