diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 39 |
1 files changed, 39 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index e7c15f94c8..0b67d8fbe6 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -872,6 +872,45 @@ high-throughput sequence analysis. The package is primarily useful to developers of other R packages who wish to make use of HTSlib.") (license license:lgpl2.0+)))) +(define-public r-singlet + (let ((commit "765a6c45081807a1522f0e8983e2417822a36f36") + (revision "1")) + (package + (name "r-singlet") + (version (git-version "0.99.26" revision commit)) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/zdebruine/singlet") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "040v8wzl9qr8ribr6qss61fz4698d14cqs8nxbc8hqwiqlpy3vs4")))) + (properties `((upstream-name . "singlet"))) + (build-system r-build-system) + (propagated-inputs (list r-dplyr + r-fgsea + r-ggplot2 + r-knitr + r-limma + r-matrix + r-msigdbr + r-rcpp + r-rcppml/devel + r-reshape2 + r-scuttle + r-seurat)) + (native-inputs (list r-knitr)) + (home-page "https://github.com/zdebruine/singlet") + (synopsis "Non-negative Matrix Factorization for single-cell analysis") + (description + "This is a package for fast @dfn{Non-negative Matrix +Factorization} (NMF) with automatic rank-determination for dimension reduction +of single-cell data using Seurat, RcppML nmf, SingleCellExperiments and +similar.") + (license license:gpl2+)))) + (define-public r-stringendo (let ((commit "83b8f2d82a09b33b9e895438bb523a021138be01") (revision "1")) |