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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4b9cd22f86..b14b7d4caf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5159,6 +5159,30 @@ sequence.") (supported-systems '("i686-linux" "x86_64-linux")) (license license:bsd-3))) +(define-public r-centipede + (package + (name "r-centipede") + (version "1.2") + (source (origin + (method url-fetch) + (uri (string-append "http://download.r-forge.r-project.org/" + "src/contrib/CENTIPEDE_" version ".tar.gz")) + (sha256 + (base32 + "1hsx6qgwr0i67fhy9257zj7s0ppncph2hjgbia5nn6nfmj0ax6l9")))) + (build-system r-build-system) + (home-page "http://centipede.uchicago.edu/") + (synopsis "Predict transcription factor binding sites") + (description + "CENTIPEDE applies a hierarchical Bayesian mixture model to infer regions +of the genome that are bound by particular transcription factors. It starts +by identifying a set of candidate binding sites, and then aims to classify the +sites according to whether each site is bound or not bound by a transcription +factor. CENTIPEDE is an unsupervised learning algorithm that discriminates +between two different types of motif instances using as much relevant +information as possible.") + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-vegan (package (name "r-vegan") |