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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 740ed66972..65b44568e0 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13312,6 +13312,42 @@ cases include: @end enumerate\n") (license license:expat))) +(define-public miniasm + (package + (name "miniasm") + (version "0.3") + (source (origin + (method url-fetch) + (uri (string-append + "https://github.com/lh3/miniasm/archive/v" + version ".tar.gz")) + (file-name (string-append name "-" version ".tar.gz")) + (sha256 + (base32 + "0g89pa98dvh34idv7w1zv12bsbyr3a11c4qb1cdcz68gyda88s4v")))) + (build-system gnu-build-system) + (inputs + `(("zlib" ,zlib))) + (arguments + `(#:tests? #f ; There are no tests. + #:phases + (modify-phases %standard-phases + (delete 'configure) + (replace 'install + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin"))) + (install-file "miniasm" bin) + (install-file "minidot" bin))))))) + (home-page "https://github.com/lh3/miniasm") + (synopsis "Ultrafast de novo assembly for long noisy reads") + (description "Miniasm is a very fast OLC-based de novo assembler for noisy +long reads. It takes all-vs-all read self-mappings (typically by minimap) as +input and outputs an assembly graph in the GFA format. Different from +mainstream assemblers, miniasm does not have a consensus step. It simply +concatenates pieces of read sequences to generate the final unitig sequences. +Thus the per-base error rate is similar to the raw input reads.") + (license license:expat))) + (define-public r-circus (package (name "r-circus") |