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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 66e790367d..ece59e982e 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -10969,6 +10969,46 @@ contigs alone.") (license (list license:gpl2+ ; bundled ogdf license:gpl3+)))) +(define-public libmaus2 + (package + (name "libmaus2") + (version "2.0.786") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://gitlab.com/german.tischler/libmaus2") + (commit (string-append version "-release-20210531143054")))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1rxakmwjcx2yq5sjh3v849f7dfw4xzc2fyzf6s28s3p95z84w564")))) + (build-system gnu-build-system) + ;; The test suite attempts to execute ../test-driver, which does not exist. + (arguments '(#:tests? #false)) + (propagated-inputs + `(("zlib" ,zlib))) + (native-inputs + `(("gcc" ,gcc-10) ;Code has C++17 requirements + ("pkg-config" ,pkg-config))) + (home-page "https://gitlab.com/german.tischler/libmaus2") + (synopsis "Collection of data structures and algorithms useful for bioinformatics") + (description "libmaus2 is a collection of data structures and +algorithms. It contains: + +@itemize +@item I/O classes (single byte and UTF-8); +@item @code{bitio} classes (input, output and various forms of bit level + manipulation); +@item text indexing classes (suffix and LCP array, fulltext and minute (FM), + etc.); +@item BAM sequence alignment files input/output (simple and collating); +and many lower level support classes. +@end itemize\n") + ;; The code is explicitly available under the terms of either GPLv2 or + ;; GPLv3 according to the AUTHORS file, though most files have a GPLv3+ + ;; license header. + (license (list license:gpl2+ license:gpl3+)))) + (define-public r-circus (package (name "r-circus") |