diff options
| -rw-r--r-- | gnu/packages/bioconductor.scm | 34 |
1 files changed, 34 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index b60c5d8ef2..9cb4ca36e8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1326,6 +1326,40 @@ initialization methods for classes used by the @code{oligo} and @code{crlmm} packages.") (license license:gpl2+))) +(define-public r-oligo + (package + (name "r-oligo") + (version "1.48.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "oligo" version)) + (sha256 + (base32 + "0qkyz65zvry0syibjkvkshwijccna18jy0hlib0n5x4c8x9zs5df")))) + (properties `((upstream-name . "oligo"))) + (build-system r-build-system) + (inputs `(("zlib" ,zlib))) + (propagated-inputs + `(("r-affxparser" ,r-affxparser) + ("r-affyio" ,r-affyio) + ("r-biobase" ,r-biobase) + ("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-dbi" ,r-dbi) + ("r-ff" ,r-ff) + ("r-oligoclasses" ,r-oligoclasses) + ("r-preprocesscore" ,r-preprocesscore) + ("r-rsqlite" ,r-rsqlite) + ("r-zlibbioc" ,r-zlibbioc))) + (home-page "https://bioconductor.org/packages/oligo/") + (synopsis "Preprocessing tools for oligonucleotide arrays") + (description + "This package provides a package to analyze oligonucleotide +arrays (expression/SNP/tiling/exon) at probe-level. It currently supports +Affymetrix (CEL files) and NimbleGen arrays (XYS files).") + (license license:lgpl2.0+))) + (define-public r-qvalue (package (name "r-qvalue") |