diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 10 insertions, 20 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 4036286ac7..59eedb1e12 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -8,6 +8,7 @@ ;;; Copyright © 2016 Marius Bakke <mbakke@fastmail.com> ;;; Copyright © 2016 Raoul Bonnal <ilpuccio.febo@gmail.com> ;;; Copyright © 2017 Tobias Geerinckx-Rice <me@tobias.gr> +;;; Copyright © 2017 Arun Isaac <arunisaac@systemreboot.net> ;;; ;;; This file is part of GNU Guix. ;;; @@ -39,6 +40,7 @@ #:use-module (guix build-system python) #:use-module (guix build-system r) #:use-module (guix build-system ruby) + #:use-module (guix build-system scons) #:use-module (guix build-system trivial) #:use-module (gnu packages) #:use-module (gnu packages autotools) @@ -3643,9 +3645,14 @@ form of assemblies or reads.") (base32 "1hmvdalz3zj5sqqklg0l4npjdv37cv2hsdi1al9iby2ndxjs1b73")) (patches (search-patches "metabat-fix-compilation.patch")))) - (build-system gnu-build-system) + (build-system scons-build-system) (arguments - `(#:phases + `(#:scons ,scons-python2 + #:scons-flags + (list (string-append "PREFIX=" (assoc-ref %outputs "out")) + (string-append "BOOST_ROOT=" (assoc-ref %build-inputs "boost"))) + #:tests? #f ;; Tests are run during the build phase. + #:phases (modify-phases %standard-phases (add-after 'unpack 'fix-includes (lambda _ @@ -3675,30 +3682,13 @@ form of assemblies or reads.") "/lib'")) ;; Do not distribute README. (("^env\\.Install\\(idir_prefix, 'README\\.md'\\)") "")) - #t)) - (delete 'configure) - (replace 'build - (lambda* (#:key inputs outputs #:allow-other-keys) - (mkdir (assoc-ref outputs "out")) - (zero? (system* "scons" - (string-append - "PREFIX=" - (assoc-ref outputs "out")) - (string-append - "BOOST_ROOT=" - (assoc-ref inputs "boost")) - "install")))) - ;; Check and install are carried out during build phase. - (delete 'check) - (delete 'install)))) + #t))))) (inputs `(("zlib" ,zlib) ("perl" ,perl) ("samtools" ,samtools) ("htslib" ,htslib) ("boost" ,boost))) - (native-inputs - `(("scons" ,scons))) (home-page "https://bitbucket.org/berkeleylab/metabat") (synopsis "Reconstruction of single genomes from complex microbial communities") |