diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 40 |
1 files changed, 40 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index cd848b6e00..395e8ce509 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7841,6 +7841,46 @@ includes software to ") (license license:cc0)))) +(define-public gdc-client + (package + (name "gdc-client") + (version "1.6.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/NCI-GDC/gdc-client.git") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0cagawlzjwj3wam10lv64xgbfx4zcnzxi5sjpsdhq7rn4z24mzc2")))) + (build-system python-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'relax-requirements + (lambda _ + (substitute* "requirements.txt" + (("==") ">="))))))) + (inputs + `(("python-cryptography" ,python-cryptography) + ("python-intervaltree" ,python-intervaltree) + ("python-jsonschema" ,python-jsonschema) + ("python-lxml" ,python-lxml) + ("python-ndg-httpsclient" ,python-ndg-httpsclient) + ("python-progressbar2" ,python-progressbar2) + ("python-pyasn1" ,python-pyasn1) + ("python-pyopenssl" ,python-pyopenssl) + ("python-pyyaml" ,python-pyyaml) + ("python-requests" ,python-requests) + ("python-termcolor" ,python-termcolor))) + (home-page "https://gdc.nci.nih.gov/access-data/gdc-data-transfer-tool") + (synopsis "GDC data transfer tool") + (description "The gdc-client provides several convenience functions over +the GDC API which provides general download/upload via HTTPS.") + (license license:asl2.0))) + (define-public vsearch (package (name "vsearch") |