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| -rw-r--r-- | gnu/packages/bioconductor.scm | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 85ee56c539..76c1423bc9 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -1103,6 +1103,32 @@ examples' of Affymetrix data, unlike the artificial examples included in the package @code{affy}.") (license license:gpl2+))) +(define-public r-gagedata + (package + (name "r-gagedata") + (version "2.28.0") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "gageData" version 'experiment)) + (sha256 + (base32 "16lmnvmbykvbdgwyx7r2jc217gb9nidn81860v5kri99g97j4jdn")))) + (properties `((upstream-name . "gageData"))) + (build-system r-build-system) + (home-page "https://bioconductor.org/packages/gageData") + (synopsis "Auxillary data for gage package") + (description + "This is a supportive data package for the software package @code{gage}. +However, the data supplied here are also useful for gene set or pathway +analysis or microarray data analysis in general. In this package, we provide +two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and +BMP6 (originally published as an demo dataset for GAGE, also registered as +GSE13604 in GEO). This package also includes commonly used gene set data based +on KEGG pathways and GO terms for major research species, including human, +mouse, rat and budding yeast. Mapping data between common gene IDs for budding +yeast are also included.") + (license license:gpl2+))) + (define-public r-coverageview (package (name "r-coverageview") |