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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 32 |
1 files changed, 32 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index b467a8b828..becf171880 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -16331,6 +16331,38 @@ BigWig files, as well as efficient region coverage summary over intervals from both types of files.") (license license:expat))) +(define-public megahit + (package + (name "megahit") + (version "1.2.9") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/voutcn/megahit.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1r5d9nkdmgjsbrpj43q9hy3s8jwsabaz3ji561v18hy47v58923c")))) + (build-system cmake-build-system) + (arguments + (list + #:test-target "simple_test" + #:phases + '(modify-phases %standard-phases + (add-after 'unpack 'fix-tests + (lambda _ + (substitute* "src/megahit" + (("os.path.join\\(script_path, '..'\\)") + "os.path.join(script_path, '../source')"))))))) + (inputs (list python-wrapper zlib)) + (home-page "https://www.ncbi.nlm.nih.gov/pubmed/25609793") + (synopsis "Meta-genome assembler") + (description "Megahit is a fast and memory-efficient NGS assembler. It is +optimized for metagenomes, but also works well on generic single genome +assembly (small or mammalian size) and single-cell assembly.") + (license license:gpl3))) + (define-public mudskipper (package (name "mudskipper") |