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| -rw-r--r-- | gnu/packages/bioconductor.scm | 36 |
1 files changed, 36 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 62fb7cfcf8..c62c5970b8 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -6010,6 +6010,42 @@ reduction (between group analysis) and joint dimension reduction of two datasets (coinertia analysis).") (license license:artistic2.0))) +(define-public r-metaneighbor + (package + (name "r-metaneighbor") + (version "1.18.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "MetaNeighbor" version)) + (sha256 + (base32 + "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm")))) + (properties `((upstream-name . "MetaNeighbor"))) + (build-system r-build-system) + (propagated-inputs + (list r-beanplot + r-dplyr + r-ggplot2 + r-gplots + r-igraph + r-matrix + r-matrixstats + r-rcolorbrewer + r-singlecellexperiment + r-summarizedexperiment + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://bioconductor.org/packages/MetaNeighbor") + (synopsis "Single cell replicability analysis") + (description + "This package implements a method to rapidly assess cell type identity using +both functional and random gene sets and it allows users to quantify cell type +replicability across datasets using neighbor voting. @code{MetaNeighbor} works +on the basis that cells of the same type should have more similar gene expression +profiles than cells of different types.") + (license license:expat))) + (define-public r-methylkit (package (name "r-methylkit") |