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| -rw-r--r-- | gnu/packages/bioconductor.scm | 48 |
1 files changed, 48 insertions, 0 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index 2a3776e8b5..b137232966 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -8697,6 +8697,54 @@ to identify differentially methylated regions in epigenetic epidemiology studies.") (license license:artistic2.0))) +(define-public r-milor + (package + (name "r-milor") + (version "1.4.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "miloR" version)) + (sha256 + (base32 + "1jz9p3grnczx0bpdw6j64x21in8zgm3qy19hmm296har2rx9m5zs")))) + (properties `((upstream-name . "miloR"))) + (build-system r-build-system) + (propagated-inputs + (list r-biocgenerics + r-biocneighbors + r-biocparallel + r-biocsingular + r-cowplot + r-dplyr + r-edger + r-ggbeeswarm + r-ggplot2 + r-ggraph + r-ggrepel + r-gtools + r-igraph + r-irlba + r-limma + r-matrix + r-matrixstats + r-patchwork + r-rcolorbrewer + r-s4vectors + r-singlecellexperiment + r-stringr + r-summarizedexperiment + r-tibble + r-tidyr)) + (native-inputs (list r-knitr)) + (home-page "https://marionilab.github.io/miloR") + (synopsis "Differential neighbourhood abundance testing on a graph") + (description + "Milo performs single-cell differential abundance testing. Cell states +are modelled as representative neighbourhoods on a nearest neighbour graph. +Hypothesis testing is performed using a negative bionomial generalized linear +model.") + (license license:gpl3))) + (define-public r-minfi (package (name "r-minfi") |