diff options
| -rw-r--r-- | gnu/local.mk | 4 | ||||
| -rw-r--r-- | gnu/packages/maths.scm | 47 | ||||
| -rw-r--r-- | gnu/packages/patches/scotch-graph-diam-64.patch | 27 | ||||
| -rw-r--r-- | gnu/packages/patches/scotch-graph-induce-type-64.patch | 19 | ||||
| -rw-r--r-- | gnu/packages/patches/scotch-integer-declarations.patch | 37 | ||||
| -rw-r--r-- | gnu/packages/patches/scotch-test-threading.patch | 22 |
6 files changed, 61 insertions, 95 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index fb19c1a93c..d3b40b3934 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -1219,10 +1219,8 @@ dist_patch_DATA = \ %D%/packages/patches/rust-reproducible-builds.patch \ %D%/packages/patches/rxvt-unicode-escape-sequences.patch \ %D%/packages/patches/scheme48-tests.patch \ - %D%/packages/patches/scotch-test-threading.patch \ %D%/packages/patches/scotch-build-parallelism.patch \ - %D%/packages/patches/scotch-graph-diam-64.patch \ - %D%/packages/patches/scotch-graph-induce-type-64.patch \ + %D%/packages/patches/scotch-integer-declarations.patch \ %D%/packages/patches/scribus-poppler.patch \ %D%/packages/patches/sdl-libx11-1.6.patch \ %D%/packages/patches/seq24-rename-mutex.patch \ diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index b53fa7fad1..648cbfbac7 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -2424,25 +2424,25 @@ implemented in ANSI C, and MPI for communications.") (define-public scotch (package (name "scotch") - (version "6.0.5a") + (version "6.0.6") (source (origin (method url-fetch) (uri (string-append "https://gforge.inria.fr/frs/download.php/" "latestfile/298/scotch_" version ".tar.gz")) (sha256 - (base32 "0vsmgjz8qv80di3ljmc7hbdsizxxxwy2b9rgd2fl1mdc6dgbj8av")) - (patches (search-patches "scotch-test-threading.patch" - "scotch-build-parallelism.patch" - "scotch-graph-induce-type-64.patch" - "scotch-graph-diam-64.patch")))) + (base32 "1ky4k9r6jvajhqaqnnx6h8fkmds2yxgp70dpr1qzwcyhi2nhqvv8")) + (patches (search-patches "scotch-build-parallelism.patch" + "scotch-integer-declarations.patch")))) (build-system gnu-build-system) (inputs `(("zlib" ,zlib) ("flex" ,flex) ("bison" ,bison))) + (outputs '("out" "metis")) (arguments - `(#:phases + `(#:make-flags (list (string-append "prefix=" %output)) + #:phases (modify-phases %standard-phases (add-after 'unpack 'chdir-to-src @@ -2477,7 +2477,7 @@ YACC = bison -pscotchyy -y -b y '("COMMON_FILE_COMPRESS_GZ" "COMMON_PTHREAD" "COMMON_RANDOM_FIXED_SEED" - "INTSIZE64" ;use 'long' instead of 'int' + "INTSIZE64" ;use 'int64_t' ;; Prevents symbolc clashes with libesmumps "SCOTCH_RENAME" ;; XXX: Causes invalid frees in superlu-dist tests @@ -2490,22 +2490,21 @@ YACC = bison -pscotchyy -y -b y (invoke "make" (format #f "-j~a" (parallel-job-count)) "esmumps"))) - (replace - 'install - (lambda* (#:key outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out"))) - (mkdir out) - (invoke "make" - (string-append "prefix=" out) - "install") - ;; esmumps files are not installed with the above - (for-each (lambda (f) - (copy-file f (string-append out "/include/" f))) - (find-files "../include" ".*esmumps.h$")) - (for-each (lambda (f) - (copy-file f (string-append out "/lib/" f))) - (find-files "../lib" "^lib.*esmumps.*")) - #t)))))) + (add-before 'install 'make-install-dirs + (lambda* (#:key outputs #:allow-other-keys) + (mkdir (assoc-ref outputs "out")))) + (add-after 'install 'install-metis + (lambda* (#:key outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "metis"))) + (mkdir out) + ;; metis files are not installed with 'make install' + (for-each (lambda (f) + (install-file f (string-append out "/include"))) + (find-files "../include/" ".*metis\\.h")) + (for-each (lambda (f) + (install-file f (string-append out "/lib"))) + (find-files "../lib/" ".*metis\\..*")) + #t)))))) (home-page "http://www.labri.fr/perso/pelegrin/scotch/") (synopsis "Programs and libraries for graph algorithms") (description "SCOTCH is a set of programs and libraries which implement diff --git a/gnu/packages/patches/scotch-graph-diam-64.patch b/gnu/packages/patches/scotch-graph-diam-64.patch deleted file mode 100644 index 2ae31e3c3b..0000000000 --- a/gnu/packages/patches/scotch-graph-diam-64.patch +++ /dev/null @@ -1,27 +0,0 @@ -Fixes test_scotch_graph_diam test with -DINTSIZE64. - -Reported upstream at -https://gforge.inria.fr/tracker/index.php?func=detail&aid=21650&group_id=248&atid=1081 - ---- scotch-6.0.5a/src/libscotch/library.h -+++ scotch-6.0.5a/src/libscotch/library.h -@@ -187,6 +187,7 @@ SCOTCH_Num SCOTCH_graphBase (SCOTCH_Graph * const, const SCO - int SCOTCH_graphCheck (const SCOTCH_Graph * const); - void SCOTCH_graphSize (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const); - void SCOTCH_graphData (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const); -+SCOTCH_Num SCOTCH_graphDiamPV (SCOTCH_Graph * const); - void SCOTCH_graphStat (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const); - int SCOTCH_graphCoarsen (const SCOTCH_Graph * const, const SCOTCH_Num, const double, const SCOTCH_Num, SCOTCH_Graph * const, SCOTCH_Num * const); - int SCOTCH_graphCoarsenMatch (const SCOTCH_Graph * const, SCOTCH_Num * const, const double, const SCOTCH_Num, SCOTCH_Num * const); ---- scotch-6.0.5a/src/libscotch/library_graph_diam.c -+++ scotch-6.0.5a/src/libscotch/library_graph_diam.c -@@ -72,8 +72,7 @@ - - SCOTCH_Num - SCOTCH_graphDiamPV ( --SCOTCH_Graph * const grafptr, --const SCOTCH_Num baseval) -+SCOTCH_Graph * const grafptr) - { - return ((SCOTCH_Num) graphDiamPV ((Graph * const) grafptr)); - } diff --git a/gnu/packages/patches/scotch-graph-induce-type-64.patch b/gnu/packages/patches/scotch-graph-induce-type-64.patch deleted file mode 100644 index d2eee52a7b..0000000000 --- a/gnu/packages/patches/scotch-graph-induce-type-64.patch +++ /dev/null @@ -1,19 +0,0 @@ -Fixes return type of SCOTCH_graphInduceList and SCOTCH_graphInducePart -so that the definition matches with -DINTSIZE64. - -Reported upstream at -https://gforge.inria.fr/tracker/index.php?func=detail&aid=21608&group_id=248&atid=1081 - ---- scotch_6.0.5a/src/libscotch/library.h.orig 2018-02-11 10:52:38.000000000 -0600 -+++ scotch_6.0.5a/src/libscotch/library.h 2018-02-23 16:56:41.000000000 -0600 -@@ -199,8 +199,8 @@ - int SCOTCH_graphGeomSaveChac (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); - int SCOTCH_graphGeomSaveMmkt (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); - int SCOTCH_graphGeomSaveScot (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); --int SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const); --int SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const); -+SCOTCH_Num SCOTCH_graphInduceList (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Graph * const); -+SCOTCH_Num SCOTCH_graphInducePart (const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_GraphPart2 * const, const SCOTCH_GraphPart2, SCOTCH_Graph * const); - - int SCOTCH_graphMapInit (const SCOTCH_Graph * const, SCOTCH_Mapping * const, const SCOTCH_Arch * const, SCOTCH_Num * const); - void SCOTCH_graphMapExit (const SCOTCH_Graph * const, SCOTCH_Mapping * const); diff --git a/gnu/packages/patches/scotch-integer-declarations.patch b/gnu/packages/patches/scotch-integer-declarations.patch new file mode 100644 index 0000000000..978625c1c0 --- /dev/null +++ b/gnu/packages/patches/scotch-integer-declarations.patch @@ -0,0 +1,37 @@ +diff --git a/src/libscotch/library.h b/src/libscotch/library.h +index 1891c19..ecc0533 100644 +--- a/src/libscotch/library.h ++++ b/src/libscotch/library.h +@@ -67,6 +67,8 @@ + + /*+ Integer type. +*/ + ++#include <stdint.h> ++ + typedef DUMMYIDX SCOTCH_Idx; + + typedef DUMMYINT SCOTCH_Num; +diff --git a/src/libscotchmetis/library_metis.h b/src/libscotchmetis/library_metis.h +index e6767e1..04e71c3 100644 +--- a/src/libscotchmetis/library_metis.h ++++ b/src/libscotchmetis/library_metis.h +@@ -99,6 +99,7 @@ typedef enum { + */ + + #ifndef SCOTCH_H /* In case "scotch.h" not included before */ ++#include <stdint.h> + typedef DUMMYINT SCOTCH_Num; + #endif /* SCOTCH_H */ + +diff --git a/src/libscotchmetis/library_parmetis.h b/src/libscotchmetis/library_parmetis.h +index 6d2f0b0..3c803fc 100644 +--- a/src/libscotchmetis/library_parmetis.h ++++ b/src/libscotchmetis/library_parmetis.h +@@ -106,6 +106,7 @@ typedef enum { + */ + + #ifndef SCOTCH_H /* In case "scotch.h" not included before */ ++#include <stdint.h> + typedef DUMMYINT SCOTCH_Num; + #endif /* SCOTCH_H */ + diff --git a/gnu/packages/patches/scotch-test-threading.patch b/gnu/packages/patches/scotch-test-threading.patch deleted file mode 100644 index de8cc49c41..0000000000 --- a/gnu/packages/patches/scotch-test-threading.patch +++ /dev/null @@ -1,22 +0,0 @@ -Fix this test so that it succeeds when the library is not compiled with -SCOTCH_PTHREAD. - ---- scotch_6.0.4/src/check/test_common_thread.c 2014-09-28 11:39:59.000000000 -0500 -+++ scotch_6.0.4/src/check/test_common_thread.c 2015-01-10 00:52:00.076229542 -0600 -@@ -175,14 +175,14 @@ - char * argv[]) - { - TestThreadGroup groudat; --#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) -+#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD)) - TestThread * restrict thrdtab; - int thrdnbr; - #endif /* ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) */ - - SCOTCH_errorProg (argv[0]); - --#if ((defined COMMON_PTHREAD) || (defined SCOTCH_PTHREAD)) -+#if ((defined COMMON_PTHREAD) && (defined SCOTCH_PTHREAD)) - thrdnbr = SCOTCH_PTHREAD_NUMBER; - - groudat.redusum = COMPVAL (thrdnbr); |