diff options
68 files changed, 1712 insertions, 1976 deletions
diff --git a/doc/guix.texi b/doc/guix.texi index 66316ecd84..eea02172cf 100644 --- a/doc/guix.texi +++ b/doc/guix.texi @@ -4513,6 +4513,30 @@ This is a recursive, deep replacement. So in this example, both This is implemented using the @code{package-input-rewriting} Scheme procedure (@pxref{Defining Packages, @code{package-input-rewriting}}). + +@item --with-graft=@var{package}=@var{replacement} +This is similar to @code{--with-input} but with an important difference: +instead of rebuilding all the dependency chain, @var{replacement} is +built and then @dfn{grafted} onto the binaries that were initially +referring to @var{package}. @xref{Security Updates}, for more +information on grafts. + +For example, the command below grafts version 3.5.4 of GnuTLS onto Wget +and all its dependencies, replacing references to the version of GnuTLS +they currently refer to: + +@example +guix build --with-graft=gnutls=gnutls@@3.5.4 wget +@end example + +This has the advantage of being much faster than rebuilding everything. +But there is a caveat: it works if and only if @var{package} and +@var{replacement} are strictly compatible---for example, if they provide +a library, the application binary interface (ABI) of those libraries +must be compatible. If @var{replacement} is somehow incompatible with +@var{package}, then the resulting package may be unusable. Use with +care! + @end table @node Additional Build Options diff --git a/gnu/build/linux-container.scm b/gnu/build/linux-container.scm index 91996d06ca..3fccc9addb 100644 --- a/gnu/build/linux-container.scm +++ b/gnu/build/linux-container.scm @@ -291,15 +291,17 @@ return the exit status." (call-with-clean-exit (lambda () (for-each (lambda (ns) - (call-with-input-file (namespace-file (getpid) ns) - (lambda (current-ns-port) - (call-with-input-file (namespace-file pid ns) - (lambda (new-ns-port) - ;; Joining the namespace that the process - ;; already belongs to would throw an error. - (unless (= (port->fdes current-ns-port) - (port->fdes new-ns-port)) - (setns (port->fdes new-ns-port) 0))))))) + (let ((source (namespace-file (getpid) ns)) + (target (namespace-file pid ns))) + ;; Joining the namespace that the process already + ;; belongs to would throw an error so avoid that. + ;; XXX: This /proc interface leads to TOCTTOU. + (unless (string=? (readlink source) (readlink target)) + (call-with-input-file source + (lambda (current-ns-port) + (call-with-input-file target + (lambda (new-ns-port) + (setns (fileno new-ns-port) 0)))))))) ;; It's important that the user namespace is joined first, ;; so that the user will have the privileges to join the ;; other namespaces. Furthermore, it's important that the diff --git a/gnu/local.mk b/gnu/local.mk index 1c91e79fea..cda33e1fb3 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -70,6 +70,7 @@ GNU_SYSTEM_MODULES = \ %D%/packages/cdrom.scm \ %D%/packages/certs.scm \ %D%/packages/check.scm \ + %D%/packages/chez.scm \ %D%/packages/ci.scm \ %D%/packages/cmake.scm \ %D%/packages/code.scm \ @@ -583,8 +584,9 @@ dist_patch_DATA = \ %D%/packages/patches/gtk3-respect-GUIX_GTK3_PATH.patch \ %D%/packages/patches/gtk3-respect-GUIX_GTK3_IM_MODULE_FILE.patch \ %D%/packages/patches/gtkglext-disable-disable-deprecated.patch \ - %D%/packages/patches/hdf4-shared-fortran.patch \ + %D%/packages/patches/hdf4-architectures.patch \ %D%/packages/patches/hdf4-reproducibility.patch \ + %D%/packages/patches/hdf4-shared-fortran.patch \ %D%/packages/patches/hdf5-config-date.patch \ %D%/packages/patches/hdf-eos5-build-shared.patch \ %D%/packages/patches/hdf-eos5-remove-gctp.patch \ @@ -605,23 +607,16 @@ dist_patch_DATA = \ %D%/packages/patches/inkscape-drop-wait-for-targets.patch \ %D%/packages/patches/isl-0.11.1-aarch64-support.patch \ %D%/packages/patches/jansson-CVE-2016-4425.patch \ - %D%/packages/patches/jasper-CVE-2007-2721.patch \ - %D%/packages/patches/jasper-CVE-2008-3520.patch \ - %D%/packages/patches/jasper-CVE-2008-3522.patch \ - %D%/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch \ - %D%/packages/patches/jasper-CVE-2014-8137.patch \ - %D%/packages/patches/jasper-CVE-2014-8138.patch \ - %D%/packages/patches/jasper-CVE-2014-8157.patch \ - %D%/packages/patches/jasper-CVE-2014-8158.patch \ - %D%/packages/patches/jasper-CVE-2014-9029.patch \ - %D%/packages/patches/jasper-CVE-2016-1577.patch \ - %D%/packages/patches/jasper-CVE-2016-1867.patch \ - %D%/packages/patches/jasper-CVE-2016-2089.patch \ - %D%/packages/patches/jasper-CVE-2016-2116.patch \ %D%/packages/patches/jbig2dec-ignore-testtest.patch \ %D%/packages/patches/jq-CVE-2015-8863.patch \ %D%/packages/patches/khmer-use-libraries.patch \ %D%/packages/patches/kmod-module-directory.patch \ + %D%/packages/patches/kobodeluxe-paths.patch \ + %D%/packages/patches/kobodeluxe-enemies-pipe-decl.patch \ + %D%/packages/patches/kobodeluxe-const-charp-conversion.patch \ + %D%/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch \ + %D%/packages/patches/kobodeluxe-midicon-segmentation-fault.patch \ + %D%/packages/patches/kobodeluxe-graphics-window-signed-char.patch \ %D%/packages/patches/laby-make-install.patch \ %D%/packages/patches/ldc-disable-tests.patch \ %D%/packages/patches/lftp-dont-save-unknown-host-fingerprint.patch \ @@ -844,7 +839,6 @@ dist_patch_DATA = \ %D%/packages/patches/ttf2eot-cstddef.patch \ %D%/packages/patches/ttfautohint-source-date-epoch.patch \ %D%/packages/patches/tophat-build-with-later-seqan.patch \ - %D%/packages/patches/torsocks-dns-test.patch \ %D%/packages/patches/totem-debug-format-fix.patch \ %D%/packages/patches/tuxpaint-stamps-path.patch \ %D%/packages/patches/unzip-CVE-2014-8139.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 43faaa078f..3fe7b5f3ae 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -5888,6 +5888,99 @@ packages.") Bioconductor, CRAN, and Github.") (license license:artistic2.0))) +(define-public r-biocviews + (package + (name "r-biocviews") + (version "1.42.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "biocViews" version)) + (sha256 + (base32 + "07rjk10b91pkriyq297w86199r2d3sfji3ggs9mq2gyalsa8y4b6")))) + (properties + `((upstream-name . "biocViews"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biobase" ,r-biobase) + ("r-graph" ,r-graph) + ("r-rbgl" ,r-rbgl) + ("r-rcurl" ,r-rcurl) + ("r-xml" ,r-xml) + ("r-knitr" ,r-knitr) + ("r-runit" ,r-runit))) + (home-page "http://bioconductor.org/packages/biocViews") + (synopsis "Bioconductor package categorization helper") + (description "The purpose of biocViews is to create HTML pages that +categorize packages in a Bioconductor package repository according to keywords, +also known as views, in a controlled vocabulary.") + (license license:artistic2.0))) + +(define-public r-biocstyle + (package + (name "r-biocstyle") + (version "2.2.0") + (source (origin + (method url-fetch) + (uri (bioconductor-uri "BiocStyle" version)) + (sha256 + (base32 + "0qbk23fz8cn260isd9xlh9lxfj4adar6iqzai01c4kz0p31f45za")))) + (properties + `((upstream-name . "BiocStyle"))) + (build-system r-build-system) + (home-page "http://bioconductor.org/packages/BiocStyle") + (synopsis "Bioconductor formatting styles") + (description "This package provides standard formatting styles for +Bioconductor PDF and HTML documents. Package vignettes illustrate use and +functionality.") + (license license:artistic2.0))) + +(define-public r-getopt + (package + (name "r-getopt") + (version "1.20.0") + (source + (origin + (method url-fetch) + (uri (cran-uri "getopt" version)) + (sha256 + (base32 + "00f57vgnzmg7cz80rjmjz1556xqcmx8nhrlbbhaq4w7gl2ibl87r")))) + (build-system r-build-system) + (home-page "https://github.com/trevorld/getopt") + (synopsis "Command-line option processor for R") + (description + "This package is designed to be used with Rscript to write shebang +scripts that accept short and long options. Many users will prefer to +use the packages @code{optparse} or @code{argparse} which add extra +features like automatically generated help options and usage texts, +support for default values, positional argument support, etc.") + (license license:gpl2+))) + +(define-public r-optparse + (package + (name "r-optparse") + (version "1.3.2") + (source + (origin + (method url-fetch) + (uri (cran-uri "optparse" version)) + (sha256 + (base32 + "1g8as89r91xxi5j5azsd6vrfrhg84mnfx2683j7pacdp8s33radw")))) + (build-system r-build-system) + (propagated-inputs + `(("r-getopt" ,r-getopt))) + (home-page + "https://github.com/trevorld/optparse") + (synopsis "Command line option parser") + (description + "This package provides a command line parser inspired by Python's +@code{optparse} library to be used with Rscript to write shebang scripts +that accept short and long options.") + (license license:gpl2+))) + (define-public r-dnacopy (package (name "r-dnacopy") diff --git a/gnu/packages/chez.scm b/gnu/packages/chez.scm new file mode 100644 index 0000000000..0a74c3f87e --- /dev/null +++ b/gnu/packages/chez.scm @@ -0,0 +1,472 @@ +;;; GNU Guix --- Functional package management for GNU +;;; Copyright © 2016 Federico Beffa <beffa@fbengineering.ch> +;;; +;;; This file is part of GNU Guix. +;;; +;;; GNU Guix is free software; you can redistribute it and/or modify it +;;; under the terms of the GNU General Public License as published by +;;; the Free Software Foundation; either version 3 of the License, or (at +;;; your option) any later version. +;;; +;;; GNU Guix is distributed in the hope that it will be useful, but +;;; WITHOUT ANY WARRANTY; without even the implied warranty of +;;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the +;;; GNU General Public License for more details. +;;; +;;; You should have received a copy of the GNU General Public License +;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. + +(define-module (gnu packages chez) + #:use-module (gnu packages) + #:use-module ((guix licenses) + #:select (gpl2+ lgpl2.0+ lgpl2.1+ asl2.0 bsd-3 expat + public-domain)) + #:use-module (guix packages) + #:use-module (guix download) + #:use-module (guix git-download) + #:use-module (guix utils) + #:use-module (guix build-system gnu) + #:use-module (gnu packages compression) + #:use-module (gnu packages ncurses) + #:use-module (gnu packages ghostscript) + #:use-module (gnu packages netpbm) + #:use-module (gnu packages tex) + #:use-module (gnu packages compression) + #:use-module (gnu packages image) + #:use-module (gnu packages xorg) + #:use-module (ice-9 match)) + +(define nanopass + (let ((version "1.9")) + (origin + (method url-fetch) + (uri (string-append + "https://github.com/nanopass/nanopass-framework-scheme/archive" + "/v" version ".tar.gz")) + (sha256 (base32 "11pwyy4jiwhcl2am3a4ciczacjbjkyvdizqzdglb3l1hj2gj6nv2")) + (file-name (string-append "nanopass-" version ".tar.gz"))))) + +(define stex + (let ((version "1.2.1")) + (origin + (method url-fetch) + (uri (string-append + "https://github.com/dybvig/stex/archive" + "/v" version ".tar.gz")) + (sha256 (base32 "03pl3f668h24dn51vccr1sj5lsba9zq3j37bnxjvdadcdaj4qy5z")) + (file-name (string-append "stex-" version ".tar.gz"))))) + +(define-public chez-scheme + (package + (name "chez-scheme") + (version "9.4") + (source + (origin + (method url-fetch) + (uri (string-append "https://github.com/cisco/ChezScheme/archive/" + "v" version ".tar.gz")) + (sha256 + (base32 "0lprmpsjg2plc6ykgkz482zyvhkzv6gd0vnar71ph21h6zknyklz")) + (file-name (string-append "chez-scheme-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("ncurses" ,ncurses) + ("libx11" ,libx11) + ("xorg-rgb" ,xorg-rgb) + ("nanopass" ,nanopass) + ("zlib" ,zlib) + ("stex" ,stex))) + (native-inputs + `(("texlive" ,texlive) + ("ghostscript" ,ghostscript-gs) + ("netpbm" ,netpbm))) + (native-search-paths + (list (search-path-specification + (variable "CHEZSCHEMELIBDIRS") + (files (list (string-append "lib/csv" version "-site")))))) + (outputs '("out" "doc")) + (arguments + `(#:modules ((guix build gnu-build-system) + (guix build utils) + (ice-9 match)) + #:test-target "test" + #:configure-flags + (list ,(match (or (%current-target-system) (%current-system)) + ("x86_64-linux" '(list "--machine=ta6le")) + ("i686-linux" '(list "--machine=ti3le")) + ;; FIXME: Some people succeeded in cross-compiling to + ;; ARM. https://github.com/cisco/ChezScheme/issues/13 + (_ + '()))) + #:phases + (modify-phases %standard-phases + ;; Adapt the custom 'configure' script. + (replace 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (nanopass (assoc-ref inputs "nanopass")) + (stex (assoc-ref inputs "stex")) + (zlib (assoc-ref inputs "zlib")) + (unpack (assoc-ref %standard-phases 'unpack)) + (patch-source-shebangs + (assoc-ref %standard-phases 'patch-source-shebangs))) + (map (match-lambda + ((src orig-name new-name) + (with-directory-excursion "." + (apply unpack (list #:source src)) + (apply patch-source-shebangs (list #:source src))) + (delete-file-recursively new-name) + (system* "mv" orig-name new-name))) + `((,nanopass "nanopass-framework-scheme-1.9" "nanopass") + (,stex "stex-1.2.1" "stex"))) + ;; The Makefile wants to download and compile "zlib". We patch + ;; it to use the one from our 'zlib' package. + (substitute* "configure" + (("rmdir zlib .*$") "echo \"using system zlib\"\n")) + (substitute* (find-files "./c" "Mf-[a-zA-Z0-9.]+") + (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a") + "${Kernel}: ${kernelobj}") + (("ld ([-a-zA-Z0-9_${} ]+) \\.\\./zlib/libz\\.a" all args) + (string-append "ld " args " " zlib "/lib/libz.a")) + (("\\(cd \\.\\./zlib; ([-a-zA-Z0-9=./ ]+))") + (which "true"))) + (substitute* (find-files "mats" "Mf-.*") + (("^[[:space:]]+(cc ) *") "\tgcc ")) + (substitute* + (find-files "." (string-append + "(" + "Mf-[a-zA-Z0-9.]+" + "|Makefile[a-zA-Z0-9.]*" + "|checkin" + "|stex\\.stex" + "|newrelease" + "|workarea" + ;;"|[a-zA-Z0-9.]+\\.ms" ; guile can't read + ")")) + (("/bin/rm") (which "rm")) + (("/bin/ln") (which "ln")) + (("/bin/cp") (which "cp"))) + (substitute* "makefiles/installsh" + (("/bin/true") (which "true"))) + (substitute* "stex/Makefile" + (("PREFIX=/usr") (string-append "PREFIX=" out))) + (zero? (system* "./configure" "--threads" + (string-append "--installprefix=" out)))))) + ;; Installation of the documentation requires a running "chez". + (add-after 'install 'install-doc + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((bin (string-append (assoc-ref outputs "out") "/bin")) + (doc (string-append (assoc-ref outputs "doc") + "/share/doc/" ,name "-" ,version))) + (setenv "HOME" (getcwd)) + (setenv "PATH" (string-append (getenv "PATH") ":" bin)) + (with-directory-excursion "stex" + (system* "make" (string-append "BIN=" bin))) + (system* "make" "docs") + (with-directory-excursion "csug" + (substitute* "Makefile" + (("/tmp/csug9") doc)) + (system* "make" "install") + (install-file "csug.pdf" doc)) + (with-directory-excursion "release_notes" + (install-file "release_notes.pdf" doc)) + #t))) + ;; The binary file name is called "scheme" as the one from MIT/GNU + ;; Scheme. We add a symlink to use in case both are installed. + (add-after 'install 'install-symlink + (lambda* (#:key outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (lib (string-append out "/lib")) + (name "chez-scheme")) + (symlink (string-append bin "/scheme") + (string-append bin "/" name)) + (map (lambda (file) + (symlink file (string-append (dirname file) + "/" name ".boot"))) + (find-files lib "scheme.boot")) + #t)))))) + ;; According to the documentation MIPS is not supported. + (supported-systems (delete "mips64el-linux" %supported-systems)) + (home-page "http://www.scheme.com") + (synopsis "R6RS Scheme compiler and run-time") + (description + "Chez Scheme is a compiler and run-time system for the language of the +Revised^6 Report on Scheme (R6RS), with numerous extensions. The compiler +generates native code for each target processor, with support for x86, x86_64, +and 32-bit PowerPC architectures.") + (license asl2.0))) + +(define-public chez-srfi + (package + (name "chez-srfi") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/fedeinthemix/chez-srfi/archive" + "/v" version ".tar.gz")) + (sha256 + (base32 "17i4wly7bcr5kb5hf04ljpbvv4r5hsr9xsmw650fj43z9jr303gs")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (native-inputs + `(("chez-scheme" ,chez-scheme))) + (arguments + `(#:make-flags (let ((out (assoc-ref %outputs "out"))) + (list (string-append "PREFIX=" out))) + #:test-target "test" + #:phases (modify-phases %standard-phases + (delete 'configure)))) + (home-page "https://github.com/fedeinthemix/chez-srfi") + (synopsis "SRFI libraries for Chez Scheme") + (description + "This package provides a collection of SRFI libraries for Chez Scheme.") + (license expat))) + +(define-public chez-web + (let ((commit "5fd177fe53f31f466bf88720d03c95a3711a8bea") + (revision "1")) + (package + (name "chez-web") + ;; release 2.0 is different and doesn't work. + (version (string-append "2.0-" revision "." + (string-take commit 7))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/arcfide/ChezWEB.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 "1dq25qygyncbfq4kwwqqgyyakfqjwhp5q23vrf3bff1p66nyfl3b")))) + (build-system gnu-build-system) + (native-inputs + `(("chez-scheme" ,chez-scheme) + ("texlive" ,texlive))) + (arguments + `(#:make-flags (list (string-append "PREFIX=" %output) + (string-append "DOCDIR=" %output "/share/doc/" + ,name "-" ,version) + (string-append "LIBDIR=" %output "/lib/chezweb") + (string-append "TEXDIR=" %output "/share/texmf-local")) + #:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* _ + (copy-file "config.mk.template" "config.mk") + (substitute* "tangleit" + (("\\./cheztangle\\.ss" all) + (string-append "chez-scheme --program " all))) + (substitute* "weaveit" + (("mpost chezweb\\.mp") + "mpost --tex=tex chezweb.mp") + (("\\./chezweave" all) + (string-append "chez-scheme --program " all))) + (substitute* "installit" + (("-g \\$GROUP -o \\$OWNER") ""))))))) + (home-page "https://github.com/arcfide/ChezWEB") + (synopsis "Hygienic Literate Programming for Chez Scheme") + (description "ChezWEB is a system for doing Knuthian style WEB +programming in Scheme.") + (license expat)))) + +(define-public chez-sockets + (let ((commit "bce96881c06bd69a6757a6bff139744153924140") + (revision "1")) + (package + (name "chez-sockets") + (version (string-append "0.0-" revision "." + (string-take commit 7))) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/arcfide/chez-sockets.git") + (commit commit))) + (file-name (string-append name "-" version "-checkout")) + (sha256 + (base32 "1n5fbwwz51fdzvjackgmnsgh363g9inyxv7kmzi0469cwavwcx5m")))) + (build-system gnu-build-system) + (native-inputs + `(("chez-scheme" ,chez-scheme) + ("chez-web" ,chez-web) + ("texlive" ,texlive))) + (arguments + `(#:tests? #f ; no tests + #:phases + (modify-phases %standard-phases + (replace 'configure + (lambda* (#:key outputs inputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (chez-web (assoc-ref inputs "chez-web")) + (chez (assoc-ref inputs "chez-scheme")) + (chez-h (dirname (car (find-files chez "scheme\\.h"))))) + (substitute* "Makefile" + (("(SCHEMEH=).*$" all var) + (string-append var chez-h))) + #t))) + (add-before 'build 'tangle + (lambda _ + ;; just using "make" tries to build the .c files before + ;; they are created. + (and (zero? (system* "make" "sockets")) + (zero? (system* "make"))))) + (replace 'build + (lambda* (#:key outputs inputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (chez-site (string-append out "/lib/csv" + ,(package-version chez-scheme) + "-site/arcfide"))) + ;; make sure Chez Scheme can find the shared libraries. + (substitute* "sockets.ss" + (("(load-shared-object) \"(socket-ffi-values\\.[sd][oy].*)\"" + all cmd so) + (string-append cmd " \"" chez-site "/" so "\"")) + (("sockets-stub\\.[sd][oy].*" all) + (string-append chez-site "/" all))) + ;; to compile chez-sockets, the .so files must be + ;; installed (because of the absolute path we + ;; inserted above). + (for-each (lambda (f d) (install-file f d)) + '("socket-ffi-values.so" "sockets-stub.so") + (list chez-site chez-site)) + (zero? (system "echo '(compile-file \"sockets.sls\")' | scheme -q"))))) + (replace 'install + (lambda* (#:key outputs inputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (lib (string-append out "/lib/chez-sockets")) + (doc (string-append out "/share/doc/" ,name "-" ,version)) + (chez-site (string-append out "/lib/csv" + ,(package-version chez-scheme) + "-site/arcfide"))) + (for-each (lambda (f d) (install-file f d)) + '("sockets.pdf" "sockets.so") + (list doc chez-site)) + #t)))))) + (home-page "https://github.com/arcfide/chez-sockets") + (synopsis "Extensible sockets library for Chez Scheme") + (description "Chez-sockets is an extensible sockets library for +Chez Scheme.") + (license expat)))) + +;; Help function for Chez Scheme to add the current path to +;; CHEZSCHEMELIBDIRS. +(define chez-configure + '(lambda _ + (let ((chez-env (getenv "CHEZSCHEMELIBDIRS"))) + (setenv "CHEZSCHEMELIBDIRS" + (if chez-env + (string-append ".:" chez-env) + ".")) + #t))) + +;; Help function to define make flags for some Chez Scheme custom make +;; files. +(define (chez-make-flags name version) + `(let ((out (assoc-ref %outputs "out"))) + (list (string-append "PREFIX=" out) + (string-append "DOCDIR=" out "/share/doc/" + ,name "-" ,version)))) + +(define-public chez-matchable + (package + (name "chez-matchable") + (version "20160306") + (home-page "https://github.com/fedeinthemix/chez-matchable") + (source + (origin + (method url-fetch) + (uri (string-append home-page "/archive" "/v" version ".tar.gz")) + (sha256 + (base32 "0cl4vc6487pikjq159pj4n5ghyaax31nywb5n4yn1682h3ir1hs0")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("chez-srfi" ,chez-srfi))) ; for tests + (native-inputs + `(("chez-scheme" ,chez-scheme))) + (arguments + `(#:make-flags ,(chez-make-flags name version) + #:test-target "test" + #:phases (modify-phases %standard-phases + (replace 'configure ,chez-configure)))) + (synopsis "Portable hygienic pattern matcher for Scheme") + (description "This package provides a superset of the popular Scheme +@code{match} package by Andrew Wright, written in fully portable +@code{syntax-rules} and thus preserving hygiene.") + (license public-domain))) + +(define-public chez-irregex + (package + (name "chez-irregex") + (version "0.9.4") + (source + (origin + (method url-fetch) + (uri (string-append + "https://github.com/fedeinthemix/chez-irregex/archive" + "/v" version ".tar.gz")) + (sha256 + (base32 "0ywy5syaw549a58viz68dmgnv756ic705rcnlqxgjq27lnaim53b")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (inputs + `(("chez-matchable" ,chez-matchable))) ; for tests + (propagated-inputs + `(("chez-srfi" ,chez-srfi))) ; for irregex-utils + (native-inputs + `(("chez-scheme" ,chez-scheme))) + (arguments + `(#:make-flags ,(chez-make-flags name version) + #:test-target "test" + #:phases (modify-phases %standard-phases + (replace 'configure ,chez-configure)))) + (home-page "https://github.com/fedeinthemix/chez-irregex") + (synopsis "Portable regular expression library for Scheme") + (description "This package provides a portable and efficient +R[4567]RS implementation of regular expressions, supporting both POSIX +syntax with various (irregular) PCRE extensions, as well as SCSH's SRE +syntax, with various aliases for commonly used patterns.") + (license bsd-3))) + +(define-public chez-fmt + (package + (name "chez-fmt") + (version "0.8.11") + (source + (origin + (method url-fetch) + (uri (string-append + "http://synthcode.com/scheme/fmt/fmt-" version ".tar.gz")) + (sha256 + (base32 "1zxqlw1jyg85yzclylh8bp2b3fwcy3l3xal68jw837n5illvsjcl")) + (file-name (string-append name "-" version ".tar.gz")))) + (build-system gnu-build-system) + (propagated-inputs + `(("chez-srfi" ,chez-srfi))) ; for irregex-utils + (native-inputs + `(("chez-scheme" ,chez-scheme))) + (arguments + `(#:make-flags ,(chez-make-flags name version) + #:test-target "chez-check" + #:phases + (modify-phases %standard-phases + (replace 'configure ,chez-configure) + (replace 'build + (lambda* (#:key (make-flags '()) #:allow-other-keys) + (zero? (apply system* "make" "chez-build" make-flags)))) + (replace 'install + (lambda* (#:key (make-flags '()) #:allow-other-keys) + (zero? (apply system* "make" "chez-install" make-flags))))))) + (home-page "http://synthcode.com/scheme/fmt") + (synopsis "Combinator formatting library for Chez Scheme") + (description "This package provides a library of procedures for +formatting Scheme objects to text in various ways, and for easily +concatenating, composing and extending these formatters efficiently +without resorting to capturing and manipulating intermediate +strings.") + (license bsd-3))) diff --git a/gnu/packages/databases.scm b/gnu/packages/databases.scm index 5219766133..8d69def5b7 100644 --- a/gnu/packages/databases.scm +++ b/gnu/packages/databases.scm @@ -210,7 +210,7 @@ SQL, Key/Value, XML/XQuery or Java Object storage for their data model.") (define-public mysql (package (name "mysql") - (version "5.7.15") + (version "5.7.16") (source (origin (method url-fetch) (uri (list (string-append @@ -222,7 +222,7 @@ SQL, Key/Value, XML/XQuery or Java Object storage for their data model.") name "-" version ".tar.gz"))) (sha256 (base32 - "0mlrxcvkn6bf869hjw9fb6m24ak26ndffnd91b4mknmz8cqkb1ch")))) + "198qhd9bdm0fnpp307mgby2aar92yzya0937kxi7bcpdfjcvada9")))) (build-system cmake-build-system) (arguments `(#:configure-flags @@ -285,7 +285,7 @@ Language.") (define-public mariadb (package (name "mariadb") - (version "10.1.17") + (version "10.1.18") (source (origin (method url-fetch) (uri (string-append "https://downloads.mariadb.org/f/" @@ -293,7 +293,7 @@ Language.") name "-" version ".tar.gz")) (sha256 (base32 - "1ddalhxxcn95qp5b50z213niylcd0s6bqphid0c7c624wg2mm92c")))) + "0wrvhyck95czhz553834i9im7ljvn8k2byakcinlji7zx43njcyp")))) (build-system cmake-build-system) (arguments '(#:configure-flags diff --git a/gnu/packages/dns.scm b/gnu/packages/dns.scm index 3e79e57adb..e15ebed887 100644 --- a/gnu/packages/dns.scm +++ b/gnu/packages/dns.scm @@ -4,6 +4,7 @@ ;;; Copyright © 2016 Ricardo Wurmus <rekado@elephly.net> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 John Darrington <jmd@gnu.org> +;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is> ;;; ;;; This file is part of GNU Guix. ;;; @@ -21,9 +22,12 @@ ;;; along with GNU Guix. If not, see <http://www.gnu.org/licenses/>. (define-module (gnu packages dns) + #:use-module (gnu packages autotools) #:use-module (gnu packages databases) + #:use-module (gnu packages groff) #:use-module (gnu packages linux) #:use-module (gnu packages perl) + #:use-module (gnu packages pkg-config) #:use-module (gnu packages tls) #:use-module (gnu packages xml) #:use-module ((guix licenses) #:prefix license:) @@ -128,3 +132,32 @@ high-volume and high-reliability applications. The name BIND stands for (home-page "https://www.isc.org/downloads/bind") (license (list license:isc)))) +(define-public libasr + (package + (name "libasr") + (version "201602131606") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.opensmtpd.org/archives/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "18kdmbjsxrfai16d66qslp48b1zf7gr8him2jj5dcqgbsl44ls75")))) + (build-system gnu-build-system) + (native-inputs + `(("autoconf" ,autoconf) + ("automake" ,automake) + ("pkg-config" ,pkg-config) + ("groff" ,groff))) + (home-page "https://www.opensmtpd.org") + (synopsis "Asynchronous resolver library by the OpenBSD project") + (description + "libasr is a free, simple and portable asynchronous resolver library. +It allows to run DNS queries and perform hostname resolutions in a fully +asynchronous fashion.") + (license (list license:isc + license:bsd-2 ; last part of getrrsetbyname_async.c + license:bsd-3 + (license:non-copyleft "file://LICENSE") ; includes.h + license:openssl)))) diff --git a/gnu/packages/engineering.scm b/gnu/packages/engineering.scm index c8391f0798..4bc2fb8314 100644 --- a/gnu/packages/engineering.scm +++ b/gnu/packages/engineering.scm @@ -3,6 +3,7 @@ ;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 David Thompson <davet@gnu.org> +;;; Copyright © 2016 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -29,11 +30,14 @@ #:use-module (guix utils) #:use-module ((guix licenses) #:prefix license:) #:use-module (guix build-system gnu) + #:use-module (guix build-system cmake) #:use-module (gnu packages) + #:use-module (gnu packages algebra) #:use-module (gnu packages autotools) #:use-module (gnu packages base) #:use-module (gnu packages bison) #:use-module (gnu packages boost) + #:use-module (gnu packages check) #:use-module (gnu packages compression) #:use-module (gnu packages flex) #:use-module (gnu packages fontutils) @@ -45,6 +49,7 @@ #:use-module (gnu packages gnome) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) + #:use-module (gnu packages image) #:use-module (gnu packages linux) ;FIXME: for pcb #:use-module (gnu packages m4) #:use-module (gnu packages maths) @@ -459,3 +464,100 @@ you load several files on top of each other, do measurements on the displayed image, etc. Besides viewing Gerbers, you may also view Excellon drill files as well as pick-place files.") (license license:gpl2+))) + +(define-public ao + (let ((commit "0bc2354b8dcd1a82a0fd6647706b126045e52734")) + (package + (name "ao-cad") ;XXX: really "ao", but it collides with libao + (version (string-append "0." (string-take commit 7))) + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/mkeeter/ao") + (commit commit))) + (sha256 + (base32 + "0lm7iljklafs8dhlvaab2yhwx4xymrdjrqk9c5xvn59hlvbgl1j5")) + (file-name (string-append name "-" version "-checkout")) + (modules '((guix build utils))) + (snippet + ;; Remove bundled libraries: Eigen, glm, and catch. TODO: + ;; Unbundle efsw <https://github.com/diegostamigni/efsw>. + '(begin + (delete-file-recursively "vendor") + + ;; Use #include <catch.hpp>. + (substitute* (find-files "." "\\.[ch]pp$") + (("catch/catch\\.hpp") + "catch.hpp")))))) + (build-system cmake-build-system) + (arguments + `(;; Have the RUNPATH of libao.so point to $libdir, where libefsw.so + ;; lives. + #:configure-flags (list (string-append "-DCMAKE_SHARED_LINKER_FLAGS=" + "-Wl,-rpath=" + (assoc-ref %outputs "out") + "/lib")) + + #:phases + (modify-phases %standard-phases + (add-before 'build 'add-eigen-to-search-path + (lambda* (#:key inputs #:allow-other-keys) + ;; Allow things to find our own Eigen and Catch. + (let ((eigen (assoc-ref inputs "eigen"))) + (setenv "CPLUS_INCLUDE_PATH" + (string-append eigen "/include/eigen3:" + (getenv "CPLUS_INCLUDE_PATH"))) + #t))) + (add-after 'install 'install-guile-bindings + (lambda* (#:key outputs #:allow-other-keys) + ;; Install the Guile bindings (the build system only installs + ;; libao.so.) + (let* ((out (assoc-ref outputs "out")) + (moddir (string-append out "/share/guile/site/2.0"))) + (install-file "bind/libao.so" + (string-append out "/lib")) + + ;; Go to the source directory. + (with-directory-excursion ,(string-append "../" + name "-" version + "-checkout") + (substitute* "bind/guile/ao/bind.scm" + (("\\(define libao \\(dynamic-link .*$") + (string-append "(define libao (dynamic-link \"" + out "/lib/libao\")) ;"))) + + (for-each (lambda (file) + (install-file file + (string-append moddir + "/ao"))) + (find-files "bind/guile" "\\.scm$")) + + (substitute* "bin/ao-guile" + (("\\(add-to-load-path .*") + (string-append "(add-to-load-path \"" moddir "\")"))) + + (install-file "bin/ao-guile" + (string-append out "/bin")) + #t))))))) + (native-inputs + `(("pkg-config" ,pkg-config))) + (inputs + `(("boost" ,boost) + ("catch" ,catch-framework) + ("libpng" ,libpng) + ("glfw" ,glfw) + ("libepoxy" ,libepoxy) + ("eigen" ,eigen) + ("glm" ,glm) + ("guile" ,guile-2.0))) + (home-page "http://www.mattkeeter.com/projects/ao/") + (synopsis "Tool for programmatic computer-aided design") + (description + "Ao is a tool for programmatic computer-aided design (CAD). In Ao, +solid models are defined as Scheme scripts, and there are no opaque function +calls into the geometry kernel: everything is visible to the user. Even +fundamental, primitive shapes are represented as code in the user-level +language.") + (license (list license:lgpl2.1+ ;library + license:gpl2+))))) ;Guile bindings diff --git a/gnu/packages/enlightenment.scm b/gnu/packages/enlightenment.scm index f642943892..e0e61cbeb5 100644 --- a/gnu/packages/enlightenment.scm +++ b/gnu/packages/enlightenment.scm @@ -196,7 +196,7 @@ Libraries with some extra bells and whistles.") (define-public enlightenment (package (name "enlightenment") - (version "0.21.2") + (version "0.21.3") (source (origin (method url-fetch) (uri @@ -204,7 +204,7 @@ Libraries with some extra bells and whistles.") name "/" name "-" version ".tar.xz")) (sha256 (base32 - "0fi5dxrprnvhnn2y51gnfpsjj44snriqi20k20a73vhaqxfn8xx8")))) + "1ljzcq775njhbcaj8vdnypf2rgc6yqqdwfkf7c22603qvv9if1dr")))) (build-system gnu-build-system) (arguments `(#:configure-flags '("--enable-mount-eeze"))) diff --git a/gnu/packages/games.scm b/gnu/packages/games.scm index e4c34d08a5..259e616ab2 100644 --- a/gnu/packages/games.scm +++ b/gnu/packages/games.scm @@ -23,6 +23,7 @@ ;;; Copyright © 2016 Alex Griffin <a@ajgrf.com> ;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; Copyright © 2016 Jan Nieuwenhuizen <janneke@gnu.org> +;;; Copyright © 2016 Steve Webber <webber.sl@gmail.com> ;;; ;;; This file is part of GNU Guix. ;;; @@ -2966,3 +2967,35 @@ symbols, the game needs graphics to render the non-euclidean world.") license:public-domain ; src/direntx.* license:zlib ; src/savepng.* license:gpl2+)))) ; remaining files + +(define-public kobodeluxe + (package + (name "kobodeluxe") + (version "0.5.1") + (source (origin + (method url-fetch) + (uri (string-append "http://olofson.net/kobodl/download/KoboDeluxe-" + version ".tar.bz2")) + (sha256 + (base32 + "0b2wvdpnmaibsy419c16dfwj5kvd3pccby2aaqvm964x74592yqg")) + (patches (search-patches + "kobodeluxe-const-charp-conversion.patch" + "kobodeluxe-enemies-pipe-decl.patch" + "kobodeluxe-graphics-window-signed-char.patch" + "kobodeluxe-manpage-minus-not-hyphen.patch" + "kobodeluxe-midicon-segmentation-fault.patch" + "kobodeluxe-paths.patch")))) + (build-system gnu-build-system) + (arguments + '(#:configure-flags + (list (string-append "CPPFLAGS=-I" + (assoc-ref %build-inputs "sdl-union") + "/include/SDL")))) + (inputs `(("sdl-union" ,(sdl-union (list sdl sdl-image))))) + (synopsis "Shooter with space station destruction") + (description + "Kobo Deluxe is an enhanced version of Akira Higuchi's XKobo graphical game +for Un*x systems with X11.") + (home-page "http://olofson.net/kobodl/") + (license license:gpl2+))) diff --git a/gnu/packages/gl.scm b/gnu/packages/gl.scm index ee56998da7..54ffb386e0 100644 --- a/gnu/packages/gl.scm +++ b/gnu/packages/gl.scm @@ -570,12 +570,15 @@ OpenGL.") (native-inputs `(("doxygen" ,doxygen) ("unzip" ,unzip))) - (inputs - `(("mesa" ,mesa) + (propagated-inputs + `(("mesa" ,mesa) ;included in public headers + + ;; These are in 'Requires.private' of 'glfw3.pc'. ("libx11" ,libx11) ("libxrandr" ,libxrandr) ("libxinerama" ,libxinerama) - ("libxcursor" ,libxcursor))) + ("libxcursor" ,libxcursor) + ("libxxf86vm" ,libxxf86vm))) (home-page "http://www.glfw.org") (synopsis "OpenGL application development library") (description diff --git a/gnu/packages/haskell.scm b/gnu/packages/haskell.scm index 52e4bc3484..a933162b8b 100644 --- a/gnu/packages/haskell.scm +++ b/gnu/packages/haskell.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2015 Federico Beffa <beffa@fbengineering.ch> +;;; Copyright © 2015, 2016 Federico Beffa <beffa@fbengineering.ch> ;;; Copyright © 2015 Siniša Biđin <sinisa@bidin.eu> ;;; Copyright © 2015 Paul van der Walt <paul@denknerd.org> ;;; Copyright © 2015 Eric Bavier <bavier@member.fsf.org> @@ -44,6 +44,7 @@ #:use-module (gnu packages libffi) #:use-module (gnu packages libedit) #:use-module (gnu packages lua) + #:use-module (gnu packages maths) #:use-module (gnu packages multiprecision) #:use-module (gnu packages ncurses) #:use-module (gnu packages python) @@ -260,6 +261,134 @@ interactive environment for the functional language Haskell.") (license license:bsd-3))) +(define-public ghc-8 + (package + (name "ghc") + (version "8.0.1") + (source + (origin + (method url-fetch) + (uri (string-append "https://www.haskell.org/ghc/dist/" + version "/" name "-" version "-src.tar.xz")) + (sha256 + (base32 "1lniqy29djhjkddnailpaqhlqh4ld2mqvb1fxgxw1qqjhz6j1ywh")))) + (build-system gnu-build-system) + (supported-systems '("i686-linux" "x86_64-linux")) + (outputs '("out" "doc")) + (inputs + `(("gmp" ,gmp) + ("ncurses" ,ncurses) + ("libffi" ,libffi) + ("libedit" ,libedit) + ("ghc-testsuite" + ,(origin + (method url-fetch) + (uri (string-append + "https://www.haskell.org/ghc/dist/" + version "/" name "-" version "-testsuite.tar.xz")) + (sha256 + (base32 "0lc1vjivkxn01aw3jg2gd7fmqb5pj7a5j987c7pn5r7caqv1cmxw")))))) + (native-inputs + `(("perl" ,perl) + ("python" ,python-2) ; for tests + ("ghostscript" ,ghostscript) ; for tests + ;; GHC is built with GHC. + ("ghc-bootstrap" ,ghc))) + (arguments + `(#:test-target "test" + ;; We get a smaller number of test failures by disabling parallel test + ;; execution. + #:parallel-tests? #f + + ;; The DSOs use $ORIGIN to refer to each other, but (guix build + ;; gremlin) doesn't support it yet, so skip this phase. + #:validate-runpath? #f + + ;; Don't pass --build=<triplet>, because the configure script + ;; auto-detects slightly different triplets for --host and --target and + ;; then complains that they don't match. + #:build #f + + #:modules ((guix build gnu-build-system) + (guix build utils) + (guix build rpath) + (srfi srfi-26) + (srfi srfi-1)) + #:imported-modules (,@%gnu-build-system-modules + (guix build rpath)) + #:configure-flags + (list + (string-append "--with-gmp-libraries=" + (assoc-ref %build-inputs "gmp") "/lib") + (string-append "--with-gmp-includes=" + (assoc-ref %build-inputs "gmp") "/include") + "--with-system-libffi" + (string-append "--with-ffi-libraries=" + (assoc-ref %build-inputs "libffi") "/lib") + (string-append "--with-ffi-includes=" + (assoc-ref %build-inputs "libffi") "/include") + (string-append "--with-curses-libraries=" + (assoc-ref %build-inputs "ncurses") "/lib") + (string-append "--with-curses-includes=" + (assoc-ref %build-inputs "ncurses") "/include")) + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'unpack-testsuite + (lambda* (#:key inputs #:allow-other-keys) + (with-directory-excursion ".." + (copy-file (assoc-ref inputs "ghc-testsuite") + "ghc-testsuite.tar.xz") + (zero? (system* "tar" "xvf" "ghc-testsuite.tar.xz"))))) + (add-before 'build 'fix-lib-paths + (lambda _ + (substitute* + (list "libraries/process/System/Process/Posix.hs" + "libraries/process/tests/process001.hs" + "libraries/process/tests/process002.hs" + "libraries/unix/cbits/execvpe.c") + (("/bin/sh") (which "sh")) + (("/bin/ls") (which "ls"))) + #t)) + (add-before 'build 'fix-environment + (lambda _ + (unsetenv "GHC_PACKAGE_PATH") + (setenv "CONFIG_SHELL" (which "bash")) + #t)) + (add-before 'check 'fix-testsuite + (lambda _ + (substitute* + (list "testsuite/timeout/Makefile" + "testsuite/timeout/timeout.py" + "testsuite/timeout/timeout.hs" + "testsuite/tests/programs/life_space_leak/life.test") + (("/bin/sh") (which "sh")) + (("/bin/rm") "rm")) + #t)) + ;; the testsuite can't find shared libraries. + (add-before 'check 'configure-testsuite + (lambda* (#:key inputs #:allow-other-keys) + (let* ((gmp (assoc-ref inputs "gmp")) + (gmp-lib (string-append gmp "/lib")) + (ffi (assoc-ref inputs "libffi")) + (ffi-lib (string-append ffi "/lib")) + (ncurses (assoc-ref inputs "ncurses")) + (ncurses-lib (string-append ncurses "/lib"))) + (setenv "LD_LIBRARY_PATH" + (string-append gmp-lib ":" ffi-lib ":" ncurses-lib)) + #t)))))) + (native-search-paths (list (search-path-specification + (variable "GHC_PACKAGE_PATH") + (files (list + (string-append "lib/ghc-" version))) + (file-pattern ".*\\.conf\\.d$") + (file-type 'directory)))) + (home-page "https://www.haskell.org/ghc") + (synopsis "The Glasgow Haskell Compiler") + (description + "The Glasgow Haskell Compiler (GHC) is a state-of-the-art compiler and +interactive environment for the functional language Haskell.") + (license license:bsd-3))) + (define-public ghc-hostname (package (name "ghc-hostname") @@ -7598,4 +7727,179 @@ versions of these packages distributed with different versions of GHC. In particular, this library supports working with POSIX files that have paths which can't be decoded in the current locale encoding.") (license license:expat))) + +(define-public ghc-storable-complex + (package + (name "ghc-storable-complex") + (version "0.2.2") + (source + (origin + (method url-fetch) + (uri (string-append + "http://hackage.haskell.org/package/storable-complex/storable-complex-" + version ".tar.gz")) + (sha256 + (base32 "01kwwkpbfjrv26vj83cd92px5qbq1bpgxj0r45534aksqhany1xb")))) + (build-system haskell-build-system) + (home-page "https://github.com/cartazio/storable-complex") + (synopsis "Haskell Storable instance for Complex") + (description "This package provides a Haskell library including a +Storable instance for Complex which is binary compatible with C99, C++ +and Fortran complex data types.") + (license license:bsd-3))) + +(define-public ghc-hmatrix + (package + (name "ghc-hmatrix") + (version "0.17.0.2") + (source + (origin + (method url-fetch) + (uri (string-append + "http://hackage.haskell.org/package/hmatrix/hmatrix-" + version ".tar.gz")) + (sha256 + (base32 "1fgsrh2y9y971pzrd3767rg97bjr1ghpdvwmn1nn65s90rc9bv98")))) + (build-system haskell-build-system) + (inputs + `(("ghc-random" ,ghc-random) + ("ghc-split" ,ghc-split) + ("ghc-storable-complex" ,ghc-storable-complex) + ("ghc-vector" ,ghc-vector) + ;;("openblas" ,openblas) + ("lapack" ,lapack))) + ;; Guix's OpenBLAS is built with the flag "NO_LAPACK=1" which + ;; disables inclusion of the LAPACK functions. + ;; (arguments `(#:configure-flags '("--flags=openblas"))) + (home-page "https://github.com/albertoruiz/hmatrix") + (synopsis "Haskell numeric linear algebra library") + (description "The HMatrix package provices a Haskell library for +dealing with linear systems, matrix decompositions, and other +numerical computations based on BLAS and LAPACK.") + (license license:bsd-3))) + +(define-public ghc-hmatrix-gsl + (package + (name "ghc-hmatrix-gsl") + (version "0.17.0.0") + (source + (origin + (method url-fetch) + (uri (string-append + "http://hackage.haskell.org/package/hmatrix-gsl/hmatrix-gsl-" + version ".tar.gz")) + (sha256 + (base32 "1jbqwn9d2nldc4klhy0n8gcxr889h0daw2mjfhwgksfy1bwfjl7w")))) + (build-system haskell-build-system) + (inputs + `(("ghc-hmatrix" ,ghc-hmatrix) + ("ghc-vector" ,ghc-vector) + ("ghc-random" ,ghc-random) + ("gsl" ,gsl))) + (native-inputs `(("pkg-config" ,pkg-config))) + (home-page "https://github.com/albertoruiz/hmatrix") + (synopsis "Haskell GSL binding") + (description "This Haskell library provides a purely functional +interface to selected numerical computations, internally implemented +using GSL.") + (license license:gpl3+))) + +(define-public ghc-hmatrix-special + (package + (name "ghc-hmatrix-special") + (version "0.4.0.0") + (source + (origin + (method url-fetch) + (uri + (string-append + "http://hackage.haskell.org/package/hmatrix-special/hmatrix-special-" + version ".tar.gz")) + (sha256 + (base32 "0cr9y3swzj7slrd84g1nhdkp1kpq4q5ihwapmiaidpr2bv3hrfhz")))) + (build-system haskell-build-system) + (inputs + `(("ghc-hmatrix" ,ghc-hmatrix) + ("ghc-hmatrix-gsl" ,ghc-hmatrix-gsl))) + (home-page "https://github.com/albertoruiz/hmatrix") + (synopsis "Haskell interface to GSL special functions") + (description "This library provides an interface to GSL special +functions for Haskell.") + (license license:gpl3+))) + +(define-public ghc-hmatrix-gsl-stats + (package + (name "ghc-hmatrix-gsl-stats") + (version "0.4.1.3") + (source + (origin + (method url-fetch) + (uri + (string-append + "http://hackage.haskell.org/package/hmatrix-gsl-stats/hmatrix-gsl-stats-" + version ".tar.gz")) + (sha256 + (base32 "0f3pzi494n4js0xiq5b38n07cnby0h9da6gmwywf8plvxm9271fl")))) + (build-system haskell-build-system) + (inputs + `(("ghc-vector" ,ghc-vector) + ("ghc-storable-complex" ,ghc-storable-complex) + ("ghc-hmatrix" ,ghc-hmatrix) + ("gsl" ,gsl))) + (native-inputs `(("pkg-config" ,pkg-config))) + (home-page "http://code.haskell.org/hmatrix-gsl-stats") + (synopsis "GSL Statistics interface for Haskell") + (description "This Haskell library provides a purely functional +interface for statistics based on hmatrix and GSL.") + (license license:bsd-3))) + +(define-public ghc-easyplot + (package + (name "ghc-easyplot") + (version "1.0") + (source + (origin + (method url-fetch) + (uri (string-append + "http://hackage.haskell.org/package/easyplot/easyplot-" + version ".tar.gz")) + (sha256 + (base32 "18kndgvdj2apjpfga6fp7m16y1gx8zrwp3c5vfj03sx4v6jvciqk")))) + (build-system haskell-build-system) + (propagated-inputs `(("gnuplot" ,gnuplot))) + (arguments + `(#:phases (modify-phases %standard-phases + (add-after 'unpack 'fix-setup-suffix + (lambda _ (rename-file "Setup.lhs" "Setup.hs") #t))))) + (home-page "http://hub.darcs.net/scravy/easyplot") + (synopsis "Haskell plotting library based on gnuplot") + (description "This package provides a plotting library for +Haskell, using gnuplot for rendering.") + (license license:expat))) + +(define-public ghc-hashtables + (package + (name "ghc-hashtables") + (version "1.2.1.0") + (source + (origin + (method url-fetch) + (uri (string-append + "http://hackage.haskell.org/package/hashtables/hashtables-" + version ".tar.gz")) + (sha256 + (base32 "1b6w9xznk42732vpd8ili60k12yq190xnajgga0iwbdpyg424lgg")))) + (build-system haskell-build-system) + (inputs + `(("ghc-hashable" ,ghc-hashable) + ("ghc-primitive" ,ghc-primitive) + ("ghc-vector" ,ghc-vector))) + (home-page "http://github.com/gregorycollins/hashtables") + (synopsis "Haskell Mutable hash tables in the ST monad") + (description "This package provides a Haskell library including a +couple of different implementations of mutable hash tables in the ST +monad, as well as a typeclass abstracting their common operations, and +a set of wrappers to use the hash tables in the IO monad.") + (license license:bsd-3))) + ;;; haskell.scm ends here diff --git a/gnu/packages/image.scm b/gnu/packages/image.scm index 4b05cca3b4..5017a21256 100644 --- a/gnu/packages/image.scm +++ b/gnu/packages/image.scm @@ -770,31 +770,15 @@ convert, manipulate, filter and display a wide variety of image formats.") (define-public jasper (package (name "jasper") - (version "1.900.1") + (version "1.900.5") (source (origin (method url-fetch) (uri (string-append "https://www.ece.uvic.ca/~frodo/jasper" - "/software/jasper-" version ".zip")) + "/software/jasper-" version ".tar.gz")) (sha256 (base32 - "154l7zk7yh3v8l2l6zm5s2alvd2fzkp6c9i18iajfbna5af5m43b")) - (patches (search-patches - "jasper-CVE-2007-2721.patch" - "jasper-CVE-2008-3520.patch" - "jasper-CVE-2008-3522.patch" - "jasper-CVE-2011-4516-and-CVE-2011-4517.patch" - "jasper-CVE-2014-8137.patch" - "jasper-CVE-2014-8138.patch" - "jasper-CVE-2014-8157.patch" - "jasper-CVE-2014-8158.patch" - "jasper-CVE-2014-9029.patch" - "jasper-CVE-2016-1577.patch" - "jasper-CVE-2016-1867.patch" - "jasper-CVE-2016-2089.patch" - "jasper-CVE-2016-2116.patch")))) + "1fvy4ngc6064g128q4484qpinsn05y9qw6lrccc4czhalla2w26m")))) (build-system gnu-build-system) - (native-inputs - `(("unzip" ,unzip))) (synopsis "JPEG-2000 library") (description "The JasPer Project is an initiative to provide a reference implementation of the codec specified in the JPEG-2000 Part-1 standard (i.e., @@ -805,7 +789,7 @@ ISO/IEC 15444-1).") (define-public zimg (package (name "zimg") - (version "2.2.1") + (version "2.3") (source (origin (method url-fetch) @@ -814,7 +798,7 @@ ISO/IEC 15444-1).") (file-name (string-append name "-" version ".tar.gz")) (sha256 (base32 - "0m2gjpkb0dlg4j77nr41z284zvyfq9qg3ahsv8p1xy8jfr7h1hqa")))) + "1yh6kkq8596a9cxcmcxzqvwbwmxwqapwsq31xpccznw6z62j75h9")))) (build-system gnu-build-system) (native-inputs `(("autoconf" ,autoconf) @@ -832,7 +816,7 @@ of scaling, colorspace conversion, and depth conversion. A simple API enables conversion between any supported formats to operate with minimal knowledge from the programmer.") (home-page "https://github.com/sekrit-twc/zimg") - ;; test/extra/ contains musl-libm, + ;; test/extra/ contains musl-libm, ;; which is MIT/expat licensed, but only used for tests (license (license:fsf-free "file://COPYING")))) ;WTFPL version 2 diff --git a/gnu/packages/mail.scm b/gnu/packages/mail.scm index 47c15497d4..0be0929e92 100644 --- a/gnu/packages/mail.scm +++ b/gnu/packages/mail.scm @@ -46,19 +46,23 @@ #:use-module (gnu packages cyrus-sasl) #:use-module (gnu packages databases) #:use-module (gnu packages dejagnu) + #:use-module (gnu packages dns) #:use-module (gnu packages emacs) #:use-module (gnu packages enchant) #:use-module (gnu packages ghostscript) #:use-module (gnu packages glib) #:use-module (gnu packages gnome) #:use-module (gnu packages gnupg) + #:use-module (gnu packages groff) #:use-module (gnu packages gsasl) #:use-module (gnu packages gtk) #:use-module (gnu packages guile) #:use-module (gnu packages flex) #:use-module (gnu packages libcanberra) + #:use-module (gnu packages libevent) #:use-module (gnu packages libidn) #:use-module (gnu packages linux) + #:use-module (gnu packages lua) #:use-module (gnu packages m4) #:use-module (gnu packages ncurses) #:use-module (gnu packages pcre) @@ -81,7 +85,8 @@ #:use-module ((guix licenses) #:select (gpl2 gpl2+ gpl3 gpl3+ lgpl2.1 lgpl2.1+ lgpl3+ non-copyleft (expat . license:expat) bsd-3 - public-domain)) + public-domain bsd-4 isc (openssl . license:openssl) + bsd-2)) #:use-module (guix packages) #:use-module (guix download) #:use-module (guix git-download) @@ -1541,3 +1546,121 @@ transfer protocols.") (license (non-copyleft "file://LICENSE" "See LICENSE in the distribution.")))) +(define-public opensmtpd + (package + (name "opensmtpd") + (version "5.9.2p1") + (source (origin + (method url-fetch) + (uri (string-append "https://www.opensmtpd.org/archives/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "07d7f1m5sxyz6mkk228rcm7fsf7350994ayvmhgph333q5rz48im")))) + (build-system gnu-build-system) + (inputs + `(("bdb" ,bdb) + ("libressl" ,libressl) + ("libevent" ,libevent) + ("libasr" ,libasr) + ("linux-pam" ,linux-pam) + ("zlib" ,zlib))) + (native-inputs + `(("bison" ,bison))) + (arguments + `(#:configure-flags (list "--with-table-db" "--localstatedir=/var" + "--with-user-smtpd=smtpd" "--with-user-queue=smtpq" + "--with-group-queue=smtpq") + #:phases + (modify-phases %standard-phases + ;; OpenSMTPD provides a single utility smtpctl to control the daemon and + ;; the local submission subsystem. To accomodate systems that require + ;; historical interfaces such as sendmail, newaliases or makemap, the + ;; smtpctl utility can operate in compatibility mode if called with the + ;; historical name. + (add-after 'install 'install-compabilitymode + (lambda _ + (let* ((out (assoc-ref %outputs "out")) + (sbin (string-append out "/sbin/"))) + (for-each (lambda (cmd) + (symlink "smtpctl" (string-append sbin cmd))) + '("makemap" "sendmail" "send-mail" + "newaliases" "mailq"))) + #t))))) + (synopsis "Lightweight SMTP daemon") + (description + "OpenSMTPD is an implementation of the server-side SMTP protocol, with +some additional standard extensions. It allows ordinary machines to exchange +e-mails with other systems speaking the SMTP protocol.") + (home-page "https://www.opensmtpd.org") + (license (list bsd-2 bsd-3 bsd-4 (non-copyleft "file://COPYING") + public-domain isc openssl)))) + +(define-public opensmtpd-extras + (package + (name "opensmtpd-extras") + (version "5.7.1") + (source (origin + (method url-fetch) + (uri (string-append "https://www.opensmtpd.org/archives/" + name "-" version ".tar.gz")) + (sha256 + (base32 + "1kld4hxgz792s0cb2gl7m2n618ikzqkj88w5dhaxdrxg4x2c4vdm")))) + (build-system gnu-build-system) + (inputs + `(("libressl" ,libressl) + ("libevent" ,libevent) + ("libasr" ,libasr) + ("python-2" ,python-2) + ("opensmtpd" ,opensmtpd) + ("perl" ,perl) + ("lua" ,lua) + ("postgresql" ,postgresql) + ("sqlite" ,sqlite) + ("linux-pam" ,linux-pam))) + (native-inputs + `(("bison" ,bison) + ("pkg-config" ,pkg-config) + ("groff" ,groff) + ("automake" ,automake) + ("autoconf" ,autoconf))) + (arguments + `(;; We have to configure it like this because the default checks for for example + ;; python in /usr/local/bin, /usr/bin and fails otherwise. + #:configure-flags (list + "--with-filter-clamav" "--with-filter-dkim-signer" + "--with-filter-dnsbl" "--with-filter-lua" + "--with-filter-monkey" "--with-filter-pause" + "--with-filter-perl" "--with-filter-python" + "--with-filter-regex" "--with-filter-spamassassin" + "--with-filter-stub" "--with-filter-trace" + "--with-filter-void" + + "--with-queue-null" "--with-queue-python" + "--with-queue-ram" "--with-queue-stub" + + "--with-scheduler-python" "--with-scheduler-ram" + "--with-scheduler-stub" + + "--with-table-ldap" ; "--with-table-mysql" + "--with-table-passwd" "--with-table-postgres" + "--with-table-python" "--with-table-socketmap" + "--with-table-sqlite" "--with-table-stub" + ;;"--with-table-redis" ; TODO: package hiredis + + "--with-user=smtpd" "--with-privsep-user=smtpd" + "--localstatedir=/var" "--sysconfdir=/etc" + "--with-lua-type=lua" ; can use lua or luajit + + (string-append "--with-python=" + (assoc-ref %build-inputs "python-2")) + (string-append "--with-lua=" + (assoc-ref %build-inputs "lua"))))) + (license (list bsd-2 bsd-3 bsd-4 non-copyleft + public-domain isc openssl)) + (synopsis "Extra tables, filters, and various other addons for OpenSMTPD") + (description + "This package provides extra tables, filters, and various other addons +for OpenSMTPD to extend its functionality.") + (home-page "https://www.opensmtpd.org"))) diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 83f55c9f18..274f77099e 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -456,7 +456,8 @@ computations.") version "/src/hdf-" version ".tar.bz2")) (sha256 (base32 "16yr50j845zlfx20skmw3y75ww77akk9gg0affjqkg66ih5r03mv")) - (patches (search-patches "hdf4-reproducibility.patch" + (patches (search-patches "hdf4-architectures.patch" + "hdf4-reproducibility.patch" "hdf4-shared-fortran.patch")))) (build-system gnu-build-system) diff --git a/gnu/packages/networking.scm b/gnu/packages/networking.scm index cc843c97ff..6ff6ee9dbb 100644 --- a/gnu/packages/networking.scm +++ b/gnu/packages/networking.scm @@ -10,6 +10,7 @@ ;;; Copyright © 2016 Eric Bavier <bavier@member.fsf.org> ;;; Copyright © 2016 ng0 <ng0@we.make.ritual.n0.is> ;;; Copyright © 2016 Arun Isaac <arunisaac@systemreboot.net> +;;; Copyright © 2016 Benz Schenk <benz.schenk@uzh.ch> ;;; ;;; This file is part of GNU Guix. ;;; @@ -927,3 +928,27 @@ HTTPS on port 443, allowing SSH connections from inside corporate firewalls that block port 22.") (license (list license:bsd-2 ; tls.[ch] license:gpl2+)))) ; everything else + +(define-public iperf + (package + (name "iperf") + (version "3.1.3") + (source (origin + (method url-fetch) + (uri (string-append "http://downloads.es.net/pub/iperf" + "/iperf-" version ".tar.gz")) + (sha256 + (base32 + "1gwmhm29zlp5grrpglmqj7vgx19s6xy33hk6hpbn8jnpn5lxpn30")))) + (build-system gnu-build-system) + (synopsis "TCP, UDP and SCTP bandwidth measurement tool") + (description + "iPerf is a tool to measure achievable bandwidth on IP networks. It +supports tuning of various parameters related to timing, buffers and +protocols (TCP, UDP, SCTP with IPv4 and IPv6). For each test it reports +the bandwidth, loss, and other parameters.") + (home-page "http://software.es.net/iperf/") + (license (list license:bsd-3 ; Main distribution. + license:ncsa ; src/{units,iperf_locale,tcp_window_size}.c + license:expat ; src/{cjson,net}.[ch] + license:public-domain)))) ; src/portable_endian.h diff --git a/gnu/packages/package-management.scm b/gnu/packages/package-management.scm index 34515f1d22..ca6bae42c4 100644 --- a/gnu/packages/package-management.scm +++ b/gnu/packages/package-management.scm @@ -476,13 +476,13 @@ transactions from C or Python.") (define-public diffoscope (package (name "diffoscope") - (version "60") + (version "61") (source (origin (method url-fetch) (uri (pypi-uri name version)) (sha256 (base32 - "0qwsnh7sldjlwi4qydn1ljzh3322k2ga45d867ml49xr2wnsivcc")))) + "1qpk2l6p9z58s61jfx6adm96f5r21ns128db0876zd6b6h34411p")))) (build-system python-build-system) (arguments `(#:phases (modify-phases %standard-phases diff --git a/gnu/packages/patches/jasper-CVE-2007-2721.patch b/gnu/packages/patches/jasper-CVE-2007-2721.patch deleted file mode 100644 index 9838247894..0000000000 --- a/gnu/packages/patches/jasper-CVE-2007-2721.patch +++ /dev/null @@ -1,20 +0,0 @@ -Fix CVE-2007-2721 (heap corruption in jpc_qcx_getcompparms()). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/patch-libjasper-stepsizes-overflow.diff - ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c 2007-04-06 01:29:02.000000000 +0200 -@@ -982,7 +982,10 @@ static int jpc_qcx_getcompparms(jpc_qcxc - compparms->numstepsizes = (len - n) / 2; - break; - } -- if (compparms->numstepsizes > 0) { -+ if (compparms->numstepsizes > 3 * JPC_MAXRLVLS + 1) { -+ jpc_qcx_destroycompparms(compparms); -+ return -1; -+ } else if (compparms->numstepsizes > 0) { - compparms->stepsizes = jas_malloc(compparms->numstepsizes * - sizeof(uint_fast16_t)); - assert(compparms->stepsizes); diff --git a/gnu/packages/patches/jasper-CVE-2008-3520.patch b/gnu/packages/patches/jasper-CVE-2008-3520.patch deleted file mode 100644 index 6c8772656e..0000000000 --- a/gnu/packages/patches/jasper-CVE-2008-3520.patch +++ /dev/null @@ -1,931 +0,0 @@ -Fix CVE-2008-3520 (multiple integer overflows in jas_alloc calls). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-1.900.1-CVE-2008-3520.patch -https://bugzilla.redhat.com/show_bug.cgi?id=461476 - -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_cm.c jasper-1.900.1/src/libjasper/base/jas_cm.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_cm.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_cm.c 2009-10-22 10:27:45.000000000 +0200 -@@ -704,8 +704,7 @@ static int jas_cmpxformseq_resize(jas_cm - { - jas_cmpxform_t **p; - assert(n >= pxformseq->numpxforms); -- p = (!pxformseq->pxforms) ? jas_malloc(n * sizeof(jas_cmpxform_t *)) : -- jas_realloc(pxformseq->pxforms, n * sizeof(jas_cmpxform_t *)); -+ p = jas_realloc2(pxformseq->pxforms, n, sizeof(jas_cmpxform_t *)); - if (!p) { - return -1; - } -@@ -889,13 +888,13 @@ static int jas_cmshapmatlut_set(jas_cmsh - jas_cmshapmatlut_cleanup(lut); - if (curv->numents == 0) { - lut->size = 2; -- if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t)))) -+ if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t)))) - goto error; - lut->data[0] = 0.0; - lut->data[1] = 1.0; - } else if (curv->numents == 1) { - lut->size = 256; -- if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t)))) -+ if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t)))) - goto error; - gamma = curv->ents[0] / 256.0; - for (i = 0; i < lut->size; ++i) { -@@ -903,7 +902,7 @@ static int jas_cmshapmatlut_set(jas_cmsh - } - } else { - lut->size = curv->numents; -- if (!(lut->data = jas_malloc(lut->size * sizeof(jas_cmreal_t)))) -+ if (!(lut->data = jas_alloc2(lut->size, sizeof(jas_cmreal_t)))) - goto error; - for (i = 0; i < lut->size; ++i) { - lut->data[i] = curv->ents[i] / 65535.0; -@@ -953,7 +952,7 @@ static int jas_cmshapmatlut_invert(jas_c - return -1; - } - } -- if (!(invlut->data = jas_malloc(n * sizeof(jas_cmreal_t)))) -+ if (!(invlut->data = jas_alloc2(n, sizeof(jas_cmreal_t)))) - return -1; - invlut->size = n; - for (i = 0; i < invlut->size; ++i) { -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_icc.c jasper-1.900.1/src/libjasper/base/jas_icc.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_icc.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_icc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -373,7 +373,7 @@ int jas_iccprof_save(jas_iccprof_t *prof - jas_icctagtab_t *tagtab; - - tagtab = &prof->tagtab; -- if (!(tagtab->ents = jas_malloc(prof->attrtab->numattrs * -+ if (!(tagtab->ents = jas_alloc2(prof->attrtab->numattrs, - sizeof(jas_icctagtabent_t)))) - goto error; - tagtab->numents = prof->attrtab->numattrs; -@@ -522,7 +522,7 @@ static int jas_iccprof_gettagtab(jas_str - } - if (jas_iccgetuint32(in, &tagtab->numents)) - goto error; -- if (!(tagtab->ents = jas_malloc(tagtab->numents * -+ if (!(tagtab->ents = jas_alloc2(tagtab->numents, - sizeof(jas_icctagtabent_t)))) - goto error; - tagtabent = tagtab->ents; -@@ -743,8 +743,7 @@ static int jas_iccattrtab_resize(jas_icc - { - jas_iccattr_t *newattrs; - assert(maxents >= tab->numattrs); -- newattrs = tab->attrs ? jas_realloc(tab->attrs, maxents * -- sizeof(jas_iccattr_t)) : jas_malloc(maxents * sizeof(jas_iccattr_t)); -+ newattrs = jas_realloc2(tab->attrs, maxents, sizeof(jas_iccattr_t)); - if (!newattrs) - return -1; - tab->attrs = newattrs; -@@ -999,7 +998,7 @@ static int jas_icccurv_input(jas_iccattr - - if (jas_iccgetuint32(in, &curv->numents)) - goto error; -- if (!(curv->ents = jas_malloc(curv->numents * sizeof(jas_iccuint16_t)))) -+ if (!(curv->ents = jas_alloc2(curv->numents, sizeof(jas_iccuint16_t)))) - goto error; - for (i = 0; i < curv->numents; ++i) { - if (jas_iccgetuint16(in, &curv->ents[i])) -@@ -1100,7 +1099,7 @@ static int jas_icctxtdesc_input(jas_icca - if (jas_iccgetuint32(in, &txtdesc->uclangcode) || - jas_iccgetuint32(in, &txtdesc->uclen)) - goto error; -- if (!(txtdesc->ucdata = jas_malloc(txtdesc->uclen * 2))) -+ if (!(txtdesc->ucdata = jas_alloc2(txtdesc->uclen, 2))) - goto error; - if (jas_stream_read(in, txtdesc->ucdata, txtdesc->uclen * 2) != - JAS_CAST(int, txtdesc->uclen * 2)) -@@ -1292,17 +1291,17 @@ static int jas_icclut8_input(jas_iccattr - jas_iccgetuint16(in, &lut8->numouttabents)) - goto error; - clutsize = jas_iccpowi(lut8->clutlen, lut8->numinchans) * lut8->numoutchans; -- if (!(lut8->clut = jas_malloc(clutsize * sizeof(jas_iccuint8_t))) || -- !(lut8->intabsbuf = jas_malloc(lut8->numinchans * -- lut8->numintabents * sizeof(jas_iccuint8_t))) || -- !(lut8->intabs = jas_malloc(lut8->numinchans * -+ if (!(lut8->clut = jas_alloc2(clutsize, sizeof(jas_iccuint8_t))) || -+ !(lut8->intabsbuf = jas_alloc3(lut8->numinchans, -+ lut8->numintabents, sizeof(jas_iccuint8_t))) || -+ !(lut8->intabs = jas_alloc2(lut8->numinchans, - sizeof(jas_iccuint8_t *)))) - goto error; - for (i = 0; i < lut8->numinchans; ++i) - lut8->intabs[i] = &lut8->intabsbuf[i * lut8->numintabents]; -- if (!(lut8->outtabsbuf = jas_malloc(lut8->numoutchans * -- lut8->numouttabents * sizeof(jas_iccuint8_t))) || -- !(lut8->outtabs = jas_malloc(lut8->numoutchans * -+ if (!(lut8->outtabsbuf = jas_alloc3(lut8->numoutchans, -+ lut8->numouttabents, sizeof(jas_iccuint8_t))) || -+ !(lut8->outtabs = jas_alloc2(lut8->numoutchans, - sizeof(jas_iccuint8_t *)))) - goto error; - for (i = 0; i < lut8->numoutchans; ++i) -@@ -1461,17 +1460,17 @@ static int jas_icclut16_input(jas_iccatt - jas_iccgetuint16(in, &lut16->numouttabents)) - goto error; - clutsize = jas_iccpowi(lut16->clutlen, lut16->numinchans) * lut16->numoutchans; -- if (!(lut16->clut = jas_malloc(clutsize * sizeof(jas_iccuint16_t))) || -- !(lut16->intabsbuf = jas_malloc(lut16->numinchans * -- lut16->numintabents * sizeof(jas_iccuint16_t))) || -- !(lut16->intabs = jas_malloc(lut16->numinchans * -+ if (!(lut16->clut = jas_alloc2(clutsize, sizeof(jas_iccuint16_t))) || -+ !(lut16->intabsbuf = jas_alloc3(lut16->numinchans, -+ lut16->numintabents, sizeof(jas_iccuint16_t))) || -+ !(lut16->intabs = jas_alloc2(lut16->numinchans, - sizeof(jas_iccuint16_t *)))) - goto error; - for (i = 0; i < lut16->numinchans; ++i) - lut16->intabs[i] = &lut16->intabsbuf[i * lut16->numintabents]; -- if (!(lut16->outtabsbuf = jas_malloc(lut16->numoutchans * -- lut16->numouttabents * sizeof(jas_iccuint16_t))) || -- !(lut16->outtabs = jas_malloc(lut16->numoutchans * -+ if (!(lut16->outtabsbuf = jas_alloc3(lut16->numoutchans, -+ lut16->numouttabents, sizeof(jas_iccuint16_t))) || -+ !(lut16->outtabs = jas_alloc2(lut16->numoutchans, - sizeof(jas_iccuint16_t *)))) - goto error; - for (i = 0; i < lut16->numoutchans; ++i) -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_image.c jasper-1.900.1/src/libjasper/base/jas_image.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_image.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_image.c 2009-10-22 10:27:45.000000000 +0200 -@@ -142,7 +142,7 @@ jas_image_t *jas_image_create(int numcmp - image->inmem_ = true; - - /* Allocate memory for the per-component information. */ -- if (!(image->cmpts_ = jas_malloc(image->maxcmpts_ * -+ if (!(image->cmpts_ = jas_alloc2(image->maxcmpts_, - sizeof(jas_image_cmpt_t *)))) { - jas_image_destroy(image); - return 0; -@@ -774,8 +774,7 @@ static int jas_image_growcmpts(jas_image - jas_image_cmpt_t **newcmpts; - int cmptno; - -- newcmpts = (!image->cmpts_) ? jas_malloc(maxcmpts * sizeof(jas_image_cmpt_t *)) : -- jas_realloc(image->cmpts_, maxcmpts * sizeof(jas_image_cmpt_t *)); -+ newcmpts = jas_realloc2(image->cmpts_, maxcmpts, sizeof(jas_image_cmpt_t *)); - if (!newcmpts) { - return -1; - } -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_malloc.c jasper-1.900.1/src/libjasper/base/jas_malloc.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_malloc.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_malloc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -76,6 +76,9 @@ - - /* We need the prototype for memset. */ - #include <string.h> -+#include <limits.h> -+#include <errno.h> -+#include <stdint.h> - - #include "jasper/jas_malloc.h" - -@@ -113,18 +116,50 @@ void jas_free(void *ptr) - - void *jas_realloc(void *ptr, size_t size) - { -- return realloc(ptr, size); -+ return ptr ? realloc(ptr, size) : malloc(size); - } - --void *jas_calloc(size_t nmemb, size_t size) -+void *jas_realloc2(void *ptr, size_t nmemb, size_t size) -+{ -+ if (!ptr) -+ return jas_alloc2(nmemb, size); -+ if (nmemb && SIZE_MAX / nmemb < size) { -+ errno = ENOMEM; -+ return NULL; -+ } -+ return jas_realloc(ptr, nmemb * size); -+ -+} -+ -+void *jas_alloc2(size_t nmemb, size_t size) -+{ -+ if (nmemb && SIZE_MAX / nmemb < size) { -+ errno = ENOMEM; -+ return NULL; -+ } -+ -+ return jas_malloc(nmemb * size); -+} -+ -+void *jas_alloc3(size_t a, size_t b, size_t c) - { -- void *ptr; - size_t n; -- n = nmemb * size; -- if (!(ptr = jas_malloc(n * sizeof(char)))) { -- return 0; -+ -+ if (a && SIZE_MAX / a < b) { -+ errno = ENOMEM; -+ return NULL; - } -- memset(ptr, 0, n); -+ -+ return jas_alloc2(a*b, c); -+} -+ -+void *jas_calloc(size_t nmemb, size_t size) -+{ -+ void *ptr; -+ -+ ptr = jas_alloc2(nmemb, size); -+ if (ptr) -+ memset(ptr, 0, nmemb*size); - return ptr; - } - -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_seq.c jasper-1.900.1/src/libjasper/base/jas_seq.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_seq.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_seq.c 2009-10-22 10:27:45.000000000 +0200 -@@ -114,7 +114,7 @@ jas_matrix_t *jas_matrix_create(int numr - matrix->datasize_ = numrows * numcols; - - if (matrix->maxrows_ > 0) { -- if (!(matrix->rows_ = jas_malloc(matrix->maxrows_ * -+ if (!(matrix->rows_ = jas_alloc2(matrix->maxrows_, - sizeof(jas_seqent_t *)))) { - jas_matrix_destroy(matrix); - return 0; -@@ -122,7 +122,7 @@ jas_matrix_t *jas_matrix_create(int numr - } - - if (matrix->datasize_ > 0) { -- if (!(matrix->data_ = jas_malloc(matrix->datasize_ * -+ if (!(matrix->data_ = jas_alloc2(matrix->datasize_, - sizeof(jas_seqent_t)))) { - jas_matrix_destroy(matrix); - return 0; -@@ -220,7 +220,7 @@ void jas_matrix_bindsub(jas_matrix_t *ma - mat0->numrows_ = r1 - r0 + 1; - mat0->numcols_ = c1 - c0 + 1; - mat0->maxrows_ = mat0->numrows_; -- mat0->rows_ = jas_malloc(mat0->maxrows_ * sizeof(jas_seqent_t *)); -+ mat0->rows_ = jas_alloc2(mat0->maxrows_, sizeof(jas_seqent_t *)); - for (i = 0; i < mat0->numrows_; ++i) { - mat0->rows_[i] = mat1->rows_[r0 + i] + c0; - } -diff -pruN jasper-1.900.1.orig/src/libjasper/base/jas_stream.c jasper-1.900.1/src/libjasper/base/jas_stream.c ---- jasper-1.900.1.orig/src/libjasper/base/jas_stream.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_stream.c 2009-10-22 10:27:45.000000000 +0200 -@@ -212,7 +212,7 @@ jas_stream_t *jas_stream_memopen(char *b - if (buf) { - obj->buf_ = (unsigned char *) buf; - } else { -- obj->buf_ = jas_malloc(obj->bufsize_ * sizeof(char)); -+ obj->buf_ = jas_malloc(obj->bufsize_); - obj->myalloc_ = 1; - } - if (!obj->buf_) { -@@ -992,7 +992,7 @@ static int mem_resize(jas_stream_memobj_ - unsigned char *buf; - - assert(m->buf_); -- if (!(buf = jas_realloc(m->buf_, bufsize * sizeof(unsigned char)))) { -+ if (!(buf = jas_realloc(m->buf_, bufsize))) { - return -1; - } - m->buf_ = buf; -diff -pruN jasper-1.900.1.orig/src/libjasper/bmp/bmp_dec.c jasper-1.900.1/src/libjasper/bmp/bmp_dec.c ---- jasper-1.900.1.orig/src/libjasper/bmp/bmp_dec.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/bmp/bmp_dec.c 2009-10-22 10:27:45.000000000 +0200 -@@ -283,7 +283,7 @@ static bmp_info_t *bmp_getinfo(jas_strea - } - - if (info->numcolors > 0) { -- if (!(info->palents = jas_malloc(info->numcolors * -+ if (!(info->palents = jas_alloc2(info->numcolors, - sizeof(bmp_palent_t)))) { - bmp_info_destroy(info); - return 0; -diff -pruN jasper-1.900.1.orig/src/libjasper/include/jasper/jas_malloc.h jasper-1.900.1/src/libjasper/include/jasper/jas_malloc.h ---- jasper-1.900.1.orig/src/libjasper/include/jasper/jas_malloc.h 2007-01-19 22:43:04.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/include/jasper/jas_malloc.h 2009-10-22 10:27:45.000000000 +0200 -@@ -95,6 +95,9 @@ extern "C" { - #define jas_free MEMFREE - #define jas_realloc MEMREALLOC - #define jas_calloc MEMCALLOC -+#define jas_alloc2(a, b) MEMALLOC((a)*(b)) -+#define jas_alloc3(a, b, c) MEMALLOC((a)*(b)*(c)) -+#define jas_realloc2(p, a, b) MEMREALLOC((p), (a)*(b)) - #endif - - /******************************************************************************\ -@@ -115,6 +118,12 @@ void *jas_realloc(void *ptr, size_t size - /* Allocate a block of memory and initialize the contents to zero. */ - void *jas_calloc(size_t nmemb, size_t size); - -+/* size-checked double allocation .*/ -+void *jas_alloc2(size_t, size_t); -+ -+void *jas_alloc3(size_t, size_t, size_t); -+ -+void *jas_realloc2(void *, size_t, size_t); - #endif - - #ifdef __cplusplus -diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_cod.c jasper-1.900.1/src/libjasper/jp2/jp2_cod.c ---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_cod.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jp2/jp2_cod.c 2009-10-22 10:30:24.000000000 +0200 -@@ -247,7 +247,7 @@ jp2_box_t *jp2_box_get(jas_stream_t *in) - box = 0; - tmpstream = 0; - -- if (!(box = jas_malloc(sizeof(jp2_box_t)))) { -+ if (!(box = jas_calloc(1, sizeof(jp2_box_t)))) { - goto error; - } - box->ops = &jp2_boxinfo_unk.ops; -@@ -372,7 +372,7 @@ static int jp2_bpcc_getdata(jp2_box_t *b - jp2_bpcc_t *bpcc = &box->data.bpcc; - unsigned int i; - bpcc->numcmpts = box->datalen; -- if (!(bpcc->bpcs = jas_malloc(bpcc->numcmpts * sizeof(uint_fast8_t)))) { -+ if (!(bpcc->bpcs = jas_alloc2(bpcc->numcmpts, sizeof(uint_fast8_t)))) { - return -1; - } - for (i = 0; i < bpcc->numcmpts; ++i) { -@@ -416,7 +416,7 @@ static int jp2_colr_getdata(jp2_box_t *b - break; - case JP2_COLR_ICC: - colr->iccplen = box->datalen - 3; -- if (!(colr->iccp = jas_malloc(colr->iccplen * sizeof(uint_fast8_t)))) { -+ if (!(colr->iccp = jas_alloc2(colr->iccplen, sizeof(uint_fast8_t)))) { - return -1; - } - if (jas_stream_read(in, colr->iccp, colr->iccplen) != colr->iccplen) { -@@ -453,7 +453,7 @@ static int jp2_cdef_getdata(jp2_box_t *b - if (jp2_getuint16(in, &cdef->numchans)) { - return -1; - } -- if (!(cdef->ents = jas_malloc(cdef->numchans * sizeof(jp2_cdefchan_t)))) { -+ if (!(cdef->ents = jas_alloc2(cdef->numchans, sizeof(jp2_cdefchan_t)))) { - return -1; - } - for (channo = 0; channo < cdef->numchans; ++channo) { -@@ -766,7 +766,7 @@ static int jp2_cmap_getdata(jp2_box_t *b - unsigned int i; - - cmap->numchans = (box->datalen) / 4; -- if (!(cmap->ents = jas_malloc(cmap->numchans * sizeof(jp2_cmapent_t)))) { -+ if (!(cmap->ents = jas_alloc2(cmap->numchans, sizeof(jp2_cmapent_t)))) { - return -1; - } - for (i = 0; i < cmap->numchans; ++i) { -@@ -828,10 +828,10 @@ static int jp2_pclr_getdata(jp2_box_t *b - return -1; - } - lutsize = pclr->numlutents * pclr->numchans; -- if (!(pclr->lutdata = jas_malloc(lutsize * sizeof(int_fast32_t)))) { -+ if (!(pclr->lutdata = jas_alloc2(lutsize, sizeof(int_fast32_t)))) { - return -1; - } -- if (!(pclr->bpc = jas_malloc(pclr->numchans * sizeof(uint_fast8_t)))) { -+ if (!(pclr->bpc = jas_alloc2(pclr->numchans, sizeof(uint_fast8_t)))) { - return -1; - } - for (i = 0; i < pclr->numchans; ++i) { -diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c jasper-1.900.1/src/libjasper/jp2/jp2_dec.c ---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c 2009-10-22 10:27:45.000000000 +0200 -@@ -336,7 +336,7 @@ jas_image_t *jp2_decode(jas_stream_t *in - } - - /* Allocate space for the channel-number to component-number LUT. */ -- if (!(dec->chantocmptlut = jas_malloc(dec->numchans * sizeof(uint_fast16_t)))) { -+ if (!(dec->chantocmptlut = jas_alloc2(dec->numchans, sizeof(uint_fast16_t)))) { - jas_eprintf("error: no memory\n"); - goto error; - } -@@ -354,7 +354,7 @@ jas_image_t *jp2_decode(jas_stream_t *in - if (cmapent->map == JP2_CMAP_DIRECT) { - dec->chantocmptlut[channo] = channo; - } else if (cmapent->map == JP2_CMAP_PALETTE) { -- lutents = jas_malloc(pclrd->numlutents * sizeof(int_fast32_t)); -+ lutents = jas_alloc2(pclrd->numlutents, sizeof(int_fast32_t)); - for (i = 0; i < pclrd->numlutents; ++i) { - lutents[i] = pclrd->lutdata[cmapent->pcol + i * pclrd->numchans]; - } -diff -pruN jasper-1.900.1.orig/src/libjasper/jp2/jp2_enc.c jasper-1.900.1/src/libjasper/jp2/jp2_enc.c ---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_enc.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jp2/jp2_enc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -191,7 +191,7 @@ int sgnd; - } - bpcc = &box->data.bpcc; - bpcc->numcmpts = jas_image_numcmpts(image); -- if (!(bpcc->bpcs = jas_malloc(bpcc->numcmpts * -+ if (!(bpcc->bpcs = jas_alloc2(bpcc->numcmpts, - sizeof(uint_fast8_t)))) { - goto error; - } -@@ -285,7 +285,7 @@ int sgnd; - } - cdef = &box->data.cdef; - cdef->numchans = jas_image_numcmpts(image); -- cdef->ents = jas_malloc(cdef->numchans * sizeof(jp2_cdefchan_t)); -+ cdef->ents = jas_alloc2(cdef->numchans, sizeof(jp2_cdefchan_t)); - for (i = 0; i < jas_image_numcmpts(image); ++i) { - cdefchanent = &cdef->ents[i]; - cdefchanent->channo = i; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c jasper-1.900.1/src/libjasper/jpc/jpc_cs.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_cs.c 2009-10-22 09:58:16.000000000 +0200 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c 2009-10-22 10:27:45.000000000 +0200 -@@ -502,7 +502,7 @@ static int jpc_siz_getparms(jpc_ms_t *ms - !siz->tileheight || !siz->numcomps) { - return -1; - } -- if (!(siz->comps = jas_malloc(siz->numcomps * sizeof(jpc_sizcomp_t)))) { -+ if (!(siz->comps = jas_alloc2(siz->numcomps, sizeof(jpc_sizcomp_t)))) { - return -1; - } - for (i = 0; i < siz->numcomps; ++i) { -@@ -986,7 +986,7 @@ static int jpc_qcx_getcompparms(jpc_qcxc - jpc_qcx_destroycompparms(compparms); - return -1; - } else if (compparms->numstepsizes > 0) { -- compparms->stepsizes = jas_malloc(compparms->numstepsizes * -+ compparms->stepsizes = jas_alloc2(compparms->numstepsizes, - sizeof(uint_fast16_t)); - assert(compparms->stepsizes); - for (i = 0; i < compparms->numstepsizes; ++i) { -@@ -1094,7 +1094,7 @@ static int jpc_ppm_getparms(jpc_ms_t *ms - - ppm->len = ms->len - 1; - if (ppm->len > 0) { -- if (!(ppm->data = jas_malloc(ppm->len * sizeof(unsigned char)))) { -+ if (!(ppm->data = jas_malloc(ppm->len))) { - goto error; - } - if (JAS_CAST(uint, jas_stream_read(in, ppm->data, ppm->len)) != ppm->len) { -@@ -1163,7 +1163,7 @@ static int jpc_ppt_getparms(jpc_ms_t *ms - } - ppt->len = ms->len - 1; - if (ppt->len > 0) { -- if (!(ppt->data = jas_malloc(ppt->len * sizeof(unsigned char)))) { -+ if (!(ppt->data = jas_malloc(ppt->len))) { - goto error; - } - if (jas_stream_read(in, (char *) ppt->data, ppt->len) != JAS_CAST(int, ppt->len)) { -@@ -1226,7 +1226,7 @@ static int jpc_poc_getparms(jpc_ms_t *ms - uint_fast8_t tmp; - poc->numpchgs = (cstate->numcomps > 256) ? (ms->len / 9) : - (ms->len / 7); -- if (!(poc->pchgs = jas_malloc(poc->numpchgs * sizeof(jpc_pocpchg_t)))) { -+ if (!(poc->pchgs = jas_alloc2(poc->numpchgs, sizeof(jpc_pocpchg_t)))) { - goto error; - } - for (pchgno = 0, pchg = poc->pchgs; pchgno < poc->numpchgs; ++pchgno, -@@ -1331,7 +1331,7 @@ static int jpc_crg_getparms(jpc_ms_t *ms - jpc_crgcomp_t *comp; - uint_fast16_t compno; - crg->numcomps = cstate->numcomps; -- if (!(crg->comps = jas_malloc(cstate->numcomps * sizeof(uint_fast16_t)))) { -+ if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(uint_fast16_t)))) { - return -1; - } - for (compno = 0, comp = crg->comps; compno < cstate->numcomps; -@@ -1470,7 +1470,7 @@ static int jpc_unk_getparms(jpc_ms_t *ms - cstate = 0; - - if (ms->len > 0) { -- if (!(unk->data = jas_malloc(ms->len * sizeof(unsigned char)))) { -+ if (!(unk->data = jas_malloc(ms->len))) { - return -1; - } - if (jas_stream_read(in, (char *) unk->data, ms->len) != JAS_CAST(int, ms->len)) { -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c jasper-1.900.1/src/libjasper/jpc/jpc_dec.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c 2009-10-22 09:58:16.000000000 +0200 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c 2009-10-22 10:30:50.000000000 +0200 -@@ -449,7 +449,7 @@ static int jpc_dec_process_sot(jpc_dec_t - - if (dec->state == JPC_MH) { - -- compinfos = jas_malloc(dec->numcomps * sizeof(jas_image_cmptparm_t)); -+ compinfos = jas_alloc2(dec->numcomps, sizeof(jas_image_cmptparm_t)); - assert(compinfos); - for (cmptno = 0, cmpt = dec->cmpts, compinfo = compinfos; - cmptno < dec->numcomps; ++cmptno, ++cmpt, ++compinfo) { -@@ -692,7 +692,7 @@ static int jpc_dec_tileinit(jpc_dec_t *d - tile->realmode = 1; - } - tcomp->numrlvls = ccp->numrlvls; -- if (!(tcomp->rlvls = jas_malloc(tcomp->numrlvls * -+ if (!(tcomp->rlvls = jas_alloc2(tcomp->numrlvls, - sizeof(jpc_dec_rlvl_t)))) { - return -1; - } -@@ -764,7 +764,7 @@ rlvl->bands = 0; - rlvl->cbgheightexpn); - - rlvl->numbands = (!rlvlno) ? 1 : 3; -- if (!(rlvl->bands = jas_malloc(rlvl->numbands * -+ if (!(rlvl->bands = jas_alloc2(rlvl->numbands, - sizeof(jpc_dec_band_t)))) { - return -1; - } -@@ -797,7 +797,7 @@ rlvl->bands = 0; - - assert(rlvl->numprcs); - -- if (!(band->prcs = jas_malloc(rlvl->numprcs * sizeof(jpc_dec_prc_t)))) { -+ if (!(band->prcs = jas_alloc2(rlvl->numprcs, sizeof(jpc_dec_prc_t)))) { - return -1; - } - -@@ -834,7 +834,7 @@ rlvl->bands = 0; - if (!(prc->numimsbstagtree = jpc_tagtree_create(prc->numhcblks, prc->numvcblks))) { - return -1; - } -- if (!(prc->cblks = jas_malloc(prc->numcblks * sizeof(jpc_dec_cblk_t)))) { -+ if (!(prc->cblks = jas_alloc2(prc->numcblks, sizeof(jpc_dec_cblk_t)))) { - return -1; - } - -@@ -1181,7 +1181,7 @@ static int jpc_dec_process_siz(jpc_dec_t - return -1; - } - -- if (!(dec->cmpts = jas_malloc(dec->numcomps * sizeof(jpc_dec_cmpt_t)))) { -+ if (!(dec->cmpts = jas_alloc2(dec->numcomps, sizeof(jpc_dec_cmpt_t)))) { - return -1; - } - -@@ -1204,7 +1204,7 @@ static int jpc_dec_process_siz(jpc_dec_t - dec->numhtiles = JPC_CEILDIV(dec->xend - dec->tilexoff, dec->tilewidth); - dec->numvtiles = JPC_CEILDIV(dec->yend - dec->tileyoff, dec->tileheight); - dec->numtiles = dec->numhtiles * dec->numvtiles; -- if (!(dec->tiles = jas_malloc(dec->numtiles * sizeof(jpc_dec_tile_t)))) { -+ if (!(dec->tiles = jas_calloc(dec->numtiles, sizeof(jpc_dec_tile_t)))) { - return -1; - } - -@@ -1228,7 +1228,7 @@ static int jpc_dec_process_siz(jpc_dec_t - tile->pkthdrstreampos = 0; - tile->pptstab = 0; - tile->cp = 0; -- if (!(tile->tcomps = jas_malloc(dec->numcomps * -+ if (!(tile->tcomps = jas_calloc(dec->numcomps, - sizeof(jpc_dec_tcomp_t)))) { - return -1; - } -@@ -1489,7 +1489,7 @@ static jpc_dec_cp_t *jpc_dec_cp_create(u - cp->numlyrs = 0; - cp->mctid = 0; - cp->csty = 0; -- if (!(cp->ccps = jas_malloc(cp->numcomps * sizeof(jpc_dec_ccp_t)))) { -+ if (!(cp->ccps = jas_alloc2(cp->numcomps, sizeof(jpc_dec_ccp_t)))) { - return 0; - } - if (!(cp->pchglist = jpc_pchglist_create())) { -@@ -2048,7 +2048,7 @@ jpc_streamlist_t *jpc_streamlist_create( - } - streamlist->numstreams = 0; - streamlist->maxstreams = 100; -- if (!(streamlist->streams = jas_malloc(streamlist->maxstreams * -+ if (!(streamlist->streams = jas_alloc2(streamlist->maxstreams, - sizeof(jas_stream_t *)))) { - jas_free(streamlist); - return 0; -@@ -2068,8 +2068,8 @@ int jpc_streamlist_insert(jpc_streamlist - /* Grow the array of streams if necessary. */ - if (streamlist->numstreams >= streamlist->maxstreams) { - newmaxstreams = streamlist->maxstreams + 1024; -- if (!(newstreams = jas_realloc(streamlist->streams, -- (newmaxstreams + 1024) * sizeof(jas_stream_t *)))) { -+ if (!(newstreams = jas_realloc2(streamlist->streams, -+ (newmaxstreams + 1024), sizeof(jas_stream_t *)))) { - return -1; - } - for (i = streamlist->numstreams; i < streamlist->maxstreams; ++i) { -@@ -2155,8 +2155,7 @@ int jpc_ppxstab_grow(jpc_ppxstab_t *tab, - { - jpc_ppxstabent_t **newents; - if (tab->maxents < maxents) { -- newents = (tab->ents) ? jas_realloc(tab->ents, maxents * -- sizeof(jpc_ppxstabent_t *)) : jas_malloc(maxents * sizeof(jpc_ppxstabent_t *)); -+ newents = jas_realloc2(tab->ents, maxents, sizeof(jpc_ppxstabent_t *)); - if (!newents) { - return -1; - } -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_enc.c jasper-1.900.1/src/libjasper/jpc/jpc_enc.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_enc.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_enc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -403,7 +403,7 @@ static jpc_enc_cp_t *cp_create(char *opt - vsteplcm *= jas_image_cmptvstep(image, cmptno); - } - -- if (!(cp->ccps = jas_malloc(cp->numcmpts * sizeof(jpc_enc_ccp_t)))) { -+ if (!(cp->ccps = jas_alloc2(cp->numcmpts, sizeof(jpc_enc_ccp_t)))) { - goto error; - } - for (cmptno = 0, ccp = cp->ccps; cmptno < JAS_CAST(int, cp->numcmpts); ++cmptno, -@@ -656,7 +656,7 @@ static jpc_enc_cp_t *cp_create(char *opt - - if (ilyrrates && numilyrrates > 0) { - tcp->numlyrs = numilyrrates + 1; -- if (!(tcp->ilyrrates = jas_malloc((tcp->numlyrs - 1) * -+ if (!(tcp->ilyrrates = jas_alloc2((tcp->numlyrs - 1), - sizeof(jpc_fix_t)))) { - goto error; - } -@@ -940,7 +940,7 @@ startoff = jas_stream_getrwcount(enc->ou - siz->tilewidth = cp->tilewidth; - siz->tileheight = cp->tileheight; - siz->numcomps = cp->numcmpts; -- siz->comps = jas_malloc(siz->numcomps * sizeof(jpc_sizcomp_t)); -+ siz->comps = jas_alloc2(siz->numcomps, sizeof(jpc_sizcomp_t)); - assert(siz->comps); - for (i = 0; i < JAS_CAST(int, cp->numcmpts); ++i) { - siz->comps[i].prec = cp->ccps[i].prec; -@@ -977,7 +977,7 @@ startoff = jas_stream_getrwcount(enc->ou - return -1; - } - crg = &enc->mrk->parms.crg; -- crg->comps = jas_malloc(crg->numcomps * sizeof(jpc_crgcomp_t)); -+ crg->comps = jas_alloc2(crg->numcomps, sizeof(jpc_crgcomp_t)); - if (jpc_putms(enc->out, enc->cstate, enc->mrk)) { - jas_eprintf("cannot write CRG marker\n"); - return -1; -@@ -1955,7 +1955,7 @@ jpc_enc_tile_t *jpc_enc_tile_create(jpc_ - tile->mctid = cp->tcp.mctid; - - tile->numlyrs = cp->tcp.numlyrs; -- if (!(tile->lyrsizes = jas_malloc(tile->numlyrs * -+ if (!(tile->lyrsizes = jas_alloc2(tile->numlyrs, - sizeof(uint_fast32_t)))) { - goto error; - } -@@ -1964,7 +1964,7 @@ jpc_enc_tile_t *jpc_enc_tile_create(jpc_ - } - - /* Allocate an array for the per-tile-component information. */ -- if (!(tile->tcmpts = jas_malloc(cp->numcmpts * sizeof(jpc_enc_tcmpt_t)))) { -+ if (!(tile->tcmpts = jas_alloc2(cp->numcmpts, sizeof(jpc_enc_tcmpt_t)))) { - goto error; - } - /* Initialize a few members critical for error recovery. */ -@@ -2110,7 +2110,7 @@ static jpc_enc_tcmpt_t *tcmpt_create(jpc - jas_seq2d_ystart(tcmpt->data), jas_seq2d_xend(tcmpt->data), - jas_seq2d_yend(tcmpt->data), bandinfos); - -- if (!(tcmpt->rlvls = jas_malloc(tcmpt->numrlvls * sizeof(jpc_enc_rlvl_t)))) { -+ if (!(tcmpt->rlvls = jas_alloc2(tcmpt->numrlvls, sizeof(jpc_enc_rlvl_t)))) { - goto error; - } - for (rlvlno = 0, rlvl = tcmpt->rlvls; rlvlno < tcmpt->numrlvls; -@@ -2213,7 +2213,7 @@ static jpc_enc_rlvl_t *rlvl_create(jpc_e - rlvl->numvprcs = JPC_FLOORDIVPOW2(brprcbry - tlprctly, rlvl->prcheightexpn); - rlvl->numprcs = rlvl->numhprcs * rlvl->numvprcs; - -- if (!(rlvl->bands = jas_malloc(rlvl->numbands * sizeof(jpc_enc_band_t)))) { -+ if (!(rlvl->bands = jas_alloc2(rlvl->numbands, sizeof(jpc_enc_band_t)))) { - goto error; - } - for (bandno = 0, band = rlvl->bands; bandno < rlvl->numbands; -@@ -2290,7 +2290,7 @@ if (bandinfo->xstart != bandinfo->xend & - band->synweight = bandinfo->synenergywt; - - if (band->data) { -- if (!(band->prcs = jas_malloc(rlvl->numprcs * sizeof(jpc_enc_prc_t)))) { -+ if (!(band->prcs = jas_alloc2(rlvl->numprcs, sizeof(jpc_enc_prc_t)))) { - goto error; - } - for (prcno = 0, prc = band->prcs; prcno < rlvl->numprcs; ++prcno, -@@ -2422,7 +2422,7 @@ if (!rlvlno) { - goto error; - } - -- if (!(prc->cblks = jas_malloc(prc->numcblks * sizeof(jpc_enc_cblk_t)))) { -+ if (!(prc->cblks = jas_alloc2(prc->numcblks, sizeof(jpc_enc_cblk_t)))) { - goto error; - } - for (cblkno = 0, cblk = prc->cblks; cblkno < prc->numcblks; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqdec.c jasper-1.900.1/src/libjasper/jpc/jpc_mqdec.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqdec.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_mqdec.c 2009-10-22 10:27:45.000000000 +0200 -@@ -118,7 +118,7 @@ jpc_mqdec_t *jpc_mqdec_create(int maxctx - mqdec->in = in; - mqdec->maxctxs = maxctxs; - /* Allocate memory for the per-context state information. */ -- if (!(mqdec->ctxs = jas_malloc(mqdec->maxctxs * sizeof(jpc_mqstate_t *)))) { -+ if (!(mqdec->ctxs = jas_alloc2(mqdec->maxctxs, sizeof(jpc_mqstate_t *)))) { - goto error; - } - /* Set the current context to the first context. */ -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqenc.c jasper-1.900.1/src/libjasper/jpc/jpc_mqenc.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_mqenc.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_mqenc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -197,7 +197,7 @@ jpc_mqenc_t *jpc_mqenc_create(int maxctx - mqenc->maxctxs = maxctxs; - - /* Allocate memory for the per-context state information. */ -- if (!(mqenc->ctxs = jas_malloc(mqenc->maxctxs * sizeof(jpc_mqstate_t *)))) { -+ if (!(mqenc->ctxs = jas_alloc2(mqenc->maxctxs, sizeof(jpc_mqstate_t *)))) { - goto error; - } - -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_qmfb.c jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_qmfb.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c 2009-10-22 10:27:45.000000000 +0200 -@@ -321,7 +321,7 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in - #if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide in this case. */ - abort(); - } -@@ -389,7 +389,7 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in - #if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide in this case. */ - abort(); - } -@@ -460,7 +460,7 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a, - #if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide in this case. */ - abort(); - } -@@ -549,7 +549,7 @@ void jpc_qmfb_split_colres(jpc_fix_t *a, - #if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide in this case. */ - abort(); - } -@@ -633,7 +633,7 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int - #if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide. */ - abort(); - } -@@ -698,7 +698,7 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int - #if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide. */ - abort(); - } -@@ -766,7 +766,7 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, - #if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc2(bufsize, JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide. */ - abort(); - } -@@ -852,7 +852,7 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, - #if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { -- if (!(buf = jas_malloc(bufsize * numcols * sizeof(jpc_fix_t)))) { -+ if (!(buf = jas_alloc3(bufsize, numcols, sizeof(jpc_fix_t)))) { - /* We have no choice but to commit suicide. */ - abort(); - } -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t1enc.c jasper-1.900.1/src/libjasper/jpc/jpc_t1enc.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t1enc.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_t1enc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -219,7 +219,7 @@ int jpc_enc_enccblk(jpc_enc_t *enc, jas_ - - cblk->numpasses = (cblk->numbps > 0) ? (3 * cblk->numbps - 2) : 0; - if (cblk->numpasses > 0) { -- cblk->passes = jas_malloc(cblk->numpasses * sizeof(jpc_enc_pass_t)); -+ cblk->passes = jas_alloc2(cblk->numpasses, sizeof(jpc_enc_pass_t)); - assert(cblk->passes); - } else { - cblk->passes = 0; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2cod.c jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2cod.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c 2009-10-22 10:27:45.000000000 +0200 -@@ -573,7 +573,7 @@ int jpc_pchglist_insert(jpc_pchglist_t * - } - if (pchglist->numpchgs >= pchglist->maxpchgs) { - newmaxpchgs = pchglist->maxpchgs + 128; -- if (!(newpchgs = jas_realloc(pchglist->pchgs, newmaxpchgs * sizeof(jpc_pchg_t *)))) { -+ if (!(newpchgs = jas_realloc2(pchglist->pchgs, newmaxpchgs, sizeof(jpc_pchg_t *)))) { - return -1; - } - pchglist->maxpchgs = newmaxpchgs; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2dec.c jasper-1.900.1/src/libjasper/jpc/jpc_t2dec.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2dec.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2dec.c 2009-10-22 10:27:45.000000000 +0200 -@@ -478,7 +478,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d - return 0; - } - pi->numcomps = dec->numcomps; -- if (!(pi->picomps = jas_malloc(pi->numcomps * sizeof(jpc_picomp_t)))) { -+ if (!(pi->picomps = jas_alloc2(pi->numcomps, sizeof(jpc_picomp_t)))) { - jpc_pi_destroy(pi); - return 0; - } -@@ -490,7 +490,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d - for (compno = 0, tcomp = tile->tcomps, picomp = pi->picomps; - compno < pi->numcomps; ++compno, ++tcomp, ++picomp) { - picomp->numrlvls = tcomp->numrlvls; -- if (!(picomp->pirlvls = jas_malloc(picomp->numrlvls * -+ if (!(picomp->pirlvls = jas_alloc2(picomp->numrlvls, - sizeof(jpc_pirlvl_t)))) { - jpc_pi_destroy(pi); - return 0; -@@ -503,7 +503,7 @@ jpc_pi_t *jpc_dec_pi_create(jpc_dec_t *d - rlvlno < picomp->numrlvls; ++rlvlno, ++pirlvl, ++rlvl) { - /* XXX sizeof(long) should be sizeof different type */ - pirlvl->numprcs = rlvl->numprcs; -- if (!(pirlvl->prclyrnos = jas_malloc(pirlvl->numprcs * -+ if (!(pirlvl->prclyrnos = jas_alloc2(pirlvl->numprcs, - sizeof(long)))) { - jpc_pi_destroy(pi); - return 0; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2enc.c jasper-1.900.1/src/libjasper/jpc/jpc_t2enc.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_t2enc.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2enc.c 2009-10-22 10:27:45.000000000 +0200 -@@ -565,7 +565,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t - } - pi->pktno = -1; - pi->numcomps = cp->numcmpts; -- if (!(pi->picomps = jas_malloc(pi->numcomps * sizeof(jpc_picomp_t)))) { -+ if (!(pi->picomps = jas_alloc2(pi->numcomps, sizeof(jpc_picomp_t)))) { - jpc_pi_destroy(pi); - return 0; - } -@@ -577,7 +577,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t - for (compno = 0, tcomp = tile->tcmpts, picomp = pi->picomps; - compno < pi->numcomps; ++compno, ++tcomp, ++picomp) { - picomp->numrlvls = tcomp->numrlvls; -- if (!(picomp->pirlvls = jas_malloc(picomp->numrlvls * -+ if (!(picomp->pirlvls = jas_alloc2(picomp->numrlvls, - sizeof(jpc_pirlvl_t)))) { - jpc_pi_destroy(pi); - return 0; -@@ -591,7 +591,7 @@ jpc_pi_t *jpc_enc_pi_create(jpc_enc_cp_t - /* XXX sizeof(long) should be sizeof different type */ - pirlvl->numprcs = rlvl->numprcs; - if (rlvl->numprcs) { -- if (!(pirlvl->prclyrnos = jas_malloc(pirlvl->numprcs * -+ if (!(pirlvl->prclyrnos = jas_alloc2(pirlvl->numprcs, - sizeof(long)))) { - jpc_pi_destroy(pi); - return 0; -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_tagtree.c jasper-1.900.1/src/libjasper/jpc/jpc_tagtree.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_tagtree.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_tagtree.c 2009-10-22 10:27:45.000000000 +0200 -@@ -125,7 +125,7 @@ jpc_tagtree_t *jpc_tagtree_create(int nu - ++numlvls; - } while (n > 1); - -- if (!(tree->nodes_ = jas_malloc(tree->numnodes_ * sizeof(jpc_tagtreenode_t)))) { -+ if (!(tree->nodes_ = jas_alloc2(tree->numnodes_, sizeof(jpc_tagtreenode_t)))) { - return 0; - } - -diff -pruN jasper-1.900.1.orig/src/libjasper/jpc/jpc_util.c jasper-1.900.1/src/libjasper/jpc/jpc_util.c ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_util.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_util.c 2009-10-22 10:27:45.000000000 +0200 -@@ -109,7 +109,7 @@ int jpc_atoaf(char *s, int *numvalues, d - } - - if (n) { -- if (!(vs = jas_malloc(n * sizeof(double)))) { -+ if (!(vs = jas_alloc2(n, sizeof(double)))) { - return -1; - } - -diff -pruN jasper-1.900.1.orig/src/libjasper/mif/mif_cod.c jasper-1.900.1/src/libjasper/mif/mif_cod.c ---- jasper-1.900.1.orig/src/libjasper/mif/mif_cod.c 2007-01-19 22:43:05.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/mif/mif_cod.c 2009-10-22 10:27:45.000000000 +0200 -@@ -438,8 +438,7 @@ static int mif_hdr_growcmpts(mif_hdr_t * - int cmptno; - mif_cmpt_t **newcmpts; - assert(maxcmpts >= hdr->numcmpts); -- newcmpts = (!hdr->cmpts) ? jas_malloc(maxcmpts * sizeof(mif_cmpt_t *)) : -- jas_realloc(hdr->cmpts, maxcmpts * sizeof(mif_cmpt_t *)); -+ newcmpts = jas_realloc2(hdr->cmpts, maxcmpts, sizeof(mif_cmpt_t *)); - if (!newcmpts) { - return -1; - } diff --git a/gnu/packages/patches/jasper-CVE-2008-3522.patch b/gnu/packages/patches/jasper-CVE-2008-3522.patch deleted file mode 100644 index 10cfec99a5..0000000000 --- a/gnu/packages/patches/jasper-CVE-2008-3522.patch +++ /dev/null @@ -1,14 +0,0 @@ -Fix CVE-2008-3522 (buffer overflow in 'jas_stream_printf'). -Patch from <https://bugzilla.redhat.com/show_bug.cgi?id=CVE-2008-3522>. - ---- jasper-1.900.1/src/libjasper/base/jas_stream.c 2008-09-08 14:56:01.000000000 +0200 -+++ jasper-1.900.1/src/libjasper/base/jas_stream.c 2008-09-08 14:58:16.000000000 +0200 -@@ -553,7 +553,7 @@ int jas_stream_printf(jas_stream_t *stre - int ret; - - va_start(ap, fmt); -- ret = vsprintf(buf, fmt, ap); -+ ret = vsnprintf(buf, sizeof buf, fmt, ap); - jas_stream_puts(stream, buf); - va_end(ap); - return ret; diff --git a/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch b/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch deleted file mode 100644 index 4b5917fd28..0000000000 --- a/gnu/packages/patches/jasper-CVE-2011-4516-and-CVE-2011-4517.patch +++ /dev/null @@ -1,31 +0,0 @@ -Fix CVE-2011-4516 and CVE-2011-4517 (heap buffer overflow flaws lead to -arbitrary code execution). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-1.900.1-CVE-2011-4516-CVE-2011-4517-CERT-VU-887409.patch -https://bugzilla.redhat.com/show_bug.cgi?id=747726 - -diff -up jasper-1.900.1/src/libjasper/jpc/jpc_cs.c.CERT-VU-887409 jasper-1.900.1/src/libjasper/jpc/jpc_cs.c ---- jasper-1.900.1/src/libjasper/jpc/jpc_cs.c.CERT-VU-887409 2011-10-25 17:25:39.000000000 +0200 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_cs.c 2011-10-25 17:29:14.379371908 +0200 -@@ -744,6 +744,10 @@ static int jpc_cox_getcompparms(jpc_ms_t - return -1; - } - compparms->numrlvls = compparms->numdlvls + 1; -+ if (compparms->numrlvls > JPC_MAXRLVLS) { -+ jpc_cox_destroycompparms(compparms); -+ return -1; -+ } - if (prtflag) { - for (i = 0; i < compparms->numrlvls; ++i) { - if (jpc_getuint8(in, &tmp)) { -@@ -1331,7 +1335,7 @@ static int jpc_crg_getparms(jpc_ms_t *ms - jpc_crgcomp_t *comp; - uint_fast16_t compno; - crg->numcomps = cstate->numcomps; -- if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(uint_fast16_t)))) { -+ if (!(crg->comps = jas_alloc2(cstate->numcomps, sizeof(jpc_crgcomp_t)))) { - return -1; - } - for (compno = 0, comp = crg->comps; compno < cstate->numcomps; diff --git a/gnu/packages/patches/jasper-CVE-2014-8137.patch b/gnu/packages/patches/jasper-CVE-2014-8137.patch deleted file mode 100644 index c41158999f..0000000000 --- a/gnu/packages/patches/jasper-CVE-2014-8137.patch +++ /dev/null @@ -1,64 +0,0 @@ -Fix CVE-2014-8137 (double-free in jas_iccattrval_destroy()). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8137.patch -https://bugzilla.redhat.com/show_bug.cgi?id=1173157 - ---- jasper-1.900.1.orig/src/libjasper/base/jas_icc.c 2014-12-11 14:06:44.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/base/jas_icc.c 2014-12-11 15:16:37.971272386 +0100 -@@ -1009,7 +1009,6 @@ static int jas_icccurv_input(jas_iccattr - return 0; - - error: -- jas_icccurv_destroy(attrval); - return -1; - } - -@@ -1127,7 +1126,6 @@ static int jas_icctxtdesc_input(jas_icca - #endif - return 0; - error: -- jas_icctxtdesc_destroy(attrval); - return -1; - } - -@@ -1206,8 +1204,6 @@ static int jas_icctxt_input(jas_iccattrv - goto error; - return 0; - error: -- if (txt->string) -- jas_free(txt->string); - return -1; - } - -@@ -1328,7 +1324,6 @@ static int jas_icclut8_input(jas_iccattr - goto error; - return 0; - error: -- jas_icclut8_destroy(attrval); - return -1; - } - -@@ -1497,7 +1492,6 @@ static int jas_icclut16_input(jas_iccatt - goto error; - return 0; - error: -- jas_icclut16_destroy(attrval); - return -1; - } - ---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c 2014-12-11 14:30:54.193209780 +0100 -+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c 2014-12-11 14:36:46.313217814 +0100 -@@ -291,7 +291,10 @@ jas_image_t *jp2_decode(jas_stream_t *in - case JP2_COLR_ICC: - iccprof = jas_iccprof_createfrombuf(dec->colr->data.colr.iccp, - dec->colr->data.colr.iccplen); -- assert(iccprof); -+ if (!iccprof) { -+ jas_eprintf("error: failed to parse ICC profile\n"); -+ goto error; -+ } - jas_iccprof_gethdr(iccprof, &icchdr); - jas_eprintf("ICC Profile CS %08x\n", icchdr.colorspc); - jas_image_setclrspc(dec->image, fromiccpcs(icchdr.colorspc)); diff --git a/gnu/packages/patches/jasper-CVE-2014-8138.patch b/gnu/packages/patches/jasper-CVE-2014-8138.patch deleted file mode 100644 index 0d9dc632ed..0000000000 --- a/gnu/packages/patches/jasper-CVE-2014-8138.patch +++ /dev/null @@ -1,21 +0,0 @@ -Fix CVE-2014-8138 (heap overflow in jp2_decode()). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8138.patch -https://bugzilla.redhat.com/show_bug.cgi?id=1173162 - ---- jasper-1.900.1.orig/src/libjasper/jp2/jp2_dec.c 2014-12-11 14:06:44.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jp2/jp2_dec.c 2014-12-11 14:06:26.000000000 +0100 -@@ -386,6 +386,11 @@ jas_image_t *jp2_decode(jas_stream_t *in - /* Determine the type of each component. */ - if (dec->cdef) { - for (i = 0; i < dec->numchans; ++i) { -+ /* Is the channel number reasonable? */ -+ if (dec->cdef->data.cdef.ents[i].channo >= dec->numchans) { -+ jas_eprintf("error: invalid channel number in CDEF box\n"); -+ goto error; -+ } - jas_image_setcmpttype(dec->image, - dec->chantocmptlut[dec->cdef->data.cdef.ents[i].channo], - jp2_getct(jas_image_clrspc(dec->image), diff --git a/gnu/packages/patches/jasper-CVE-2014-8157.patch b/gnu/packages/patches/jasper-CVE-2014-8157.patch deleted file mode 100644 index 62f4a6b32c..0000000000 --- a/gnu/packages/patches/jasper-CVE-2014-8157.patch +++ /dev/null @@ -1,19 +0,0 @@ -Fix CVE-2014-8157 (dec->numtiles off-by-one check in jpc_dec_process_sot()). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8157.patch -https://bugzilla.redhat.com/show_bug.cgi?id=1179282 - -diff -up jasper-1.900.1/src/libjasper/jpc/jpc_dec.c.CVE-2014-8157 jasper-1.900.1/src/libjasper/jpc/jpc_dec.c ---- jasper-1.900.1/src/libjasper/jpc/jpc_dec.c.CVE-2014-8157 2015-01-19 16:59:36.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c 2015-01-19 17:07:41.609863268 +0100 -@@ -489,7 +489,7 @@ static int jpc_dec_process_sot(jpc_dec_t - dec->curtileendoff = 0; - } - -- if (JAS_CAST(int, sot->tileno) > dec->numtiles) { -+ if (JAS_CAST(int, sot->tileno) >= dec->numtiles) { - jas_eprintf("invalid tile number in SOT marker segment\n"); - return -1; - } diff --git a/gnu/packages/patches/jasper-CVE-2014-8158.patch b/gnu/packages/patches/jasper-CVE-2014-8158.patch deleted file mode 100644 index cc54d8f53b..0000000000 --- a/gnu/packages/patches/jasper-CVE-2014-8158.patch +++ /dev/null @@ -1,336 +0,0 @@ -Fix CVE-2014-8158 (unrestricted stack memory use in jpc_qmfb.c). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-8158.patch -https://bugzilla.redhat.com/show_bug.cgi?id=1179298 - -diff -up jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c.CVE-2014-8158 jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c ---- jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c.CVE-2014-8158 2015-01-19 17:25:28.730195502 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_qmfb.c 2015-01-19 17:27:20.214663127 +0100 -@@ -306,11 +306,7 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in - { - - int bufsize = JPC_CEILDIVPOW2(numcols, 1); --#if !defined(HAVE_VLA) - jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE]; --#else -- jpc_fix_t splitbuf[bufsize]; --#endif - jpc_fix_t *buf = splitbuf; - register jpc_fix_t *srcptr; - register jpc_fix_t *dstptr; -@@ -318,7 +314,6 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in - register int m; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -326,7 +321,6 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in - abort(); - } - } --#endif - - if (numcols >= 2) { - hstartcol = (numcols + 1 - parity) >> 1; -@@ -360,12 +354,10 @@ void jpc_qmfb_split_row(jpc_fix_t *a, in - } - } - --#if !defined(HAVE_VLA) - /* If the split buffer was allocated on the heap, free this memory. */ - if (buf != splitbuf) { - jas_free(buf); - } --#endif - - } - -@@ -374,11 +366,7 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE]; --#else -- jpc_fix_t splitbuf[bufsize]; --#endif - jpc_fix_t *buf = splitbuf; - register jpc_fix_t *srcptr; - register jpc_fix_t *dstptr; -@@ -386,7 +374,6 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in - register int m; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -394,7 +381,6 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in - abort(); - } - } --#endif - - if (numrows >= 2) { - hstartcol = (numrows + 1 - parity) >> 1; -@@ -428,12 +414,10 @@ void jpc_qmfb_split_col(jpc_fix_t *a, in - } - } - --#if !defined(HAVE_VLA) - /* If the split buffer was allocated on the heap, free this memory. */ - if (buf != splitbuf) { - jas_free(buf); - } --#endif - - } - -@@ -442,11 +426,7 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a, - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE * JPC_QMFB_COLGRPSIZE]; --#else -- jpc_fix_t splitbuf[bufsize * JPC_QMFB_COLGRPSIZE]; --#endif - jpc_fix_t *buf = splitbuf; - jpc_fix_t *srcptr; - jpc_fix_t *dstptr; -@@ -457,7 +437,6 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a, - int m; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -465,7 +444,6 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a, - abort(); - } - } --#endif - - if (numrows >= 2) { - hstartcol = (numrows + 1 - parity) >> 1; -@@ -517,12 +495,10 @@ void jpc_qmfb_split_colgrp(jpc_fix_t *a, - } - } - --#if !defined(HAVE_VLA) - /* If the split buffer was allocated on the heap, free this memory. */ - if (buf != splitbuf) { - jas_free(buf); - } --#endif - - } - -@@ -531,11 +507,7 @@ void jpc_qmfb_split_colres(jpc_fix_t *a, - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t splitbuf[QMFB_SPLITBUFSIZE * JPC_QMFB_COLGRPSIZE]; --#else -- jpc_fix_t splitbuf[bufsize * numcols]; --#endif - jpc_fix_t *buf = splitbuf; - jpc_fix_t *srcptr; - jpc_fix_t *dstptr; -@@ -546,7 +518,6 @@ void jpc_qmfb_split_colres(jpc_fix_t *a, - int m; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Get a buffer. */ - if (bufsize > QMFB_SPLITBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -554,7 +525,6 @@ void jpc_qmfb_split_colres(jpc_fix_t *a, - abort(); - } - } --#endif - - if (numrows >= 2) { - hstartcol = (numrows + 1 - parity) >> 1; -@@ -606,12 +576,10 @@ void jpc_qmfb_split_colres(jpc_fix_t *a, - } - } - --#if !defined(HAVE_VLA) - /* If the split buffer was allocated on the heap, free this memory. */ - if (buf != splitbuf) { - jas_free(buf); - } --#endif - - } - -@@ -619,18 +587,13 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int - { - - int bufsize = JPC_CEILDIVPOW2(numcols, 1); --#if !defined(HAVE_VLA) - jpc_fix_t joinbuf[QMFB_JOINBUFSIZE]; --#else -- jpc_fix_t joinbuf[bufsize]; --#endif - jpc_fix_t *buf = joinbuf; - register jpc_fix_t *srcptr; - register jpc_fix_t *dstptr; - register int n; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -638,7 +601,6 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int - abort(); - } - } --#endif - - hstartcol = (numcols + 1 - parity) >> 1; - -@@ -670,12 +632,10 @@ void jpc_qmfb_join_row(jpc_fix_t *a, int - ++srcptr; - } - --#if !defined(HAVE_VLA) - /* If the join buffer was allocated on the heap, free this memory. */ - if (buf != joinbuf) { - jas_free(buf); - } --#endif - - } - -@@ -684,18 +644,13 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t joinbuf[QMFB_JOINBUFSIZE]; --#else -- jpc_fix_t joinbuf[bufsize]; --#endif - jpc_fix_t *buf = joinbuf; - register jpc_fix_t *srcptr; - register jpc_fix_t *dstptr; - register int n; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, sizeof(jpc_fix_t)))) { -@@ -703,7 +658,6 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int - abort(); - } - } --#endif - - hstartcol = (numrows + 1 - parity) >> 1; - -@@ -735,12 +689,10 @@ void jpc_qmfb_join_col(jpc_fix_t *a, int - ++srcptr; - } - --#if !defined(HAVE_VLA) - /* If the join buffer was allocated on the heap, free this memory. */ - if (buf != joinbuf) { - jas_free(buf); - } --#endif - - } - -@@ -749,11 +701,7 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t joinbuf[QMFB_JOINBUFSIZE * JPC_QMFB_COLGRPSIZE]; --#else -- jpc_fix_t joinbuf[bufsize * JPC_QMFB_COLGRPSIZE]; --#endif - jpc_fix_t *buf = joinbuf; - jpc_fix_t *srcptr; - jpc_fix_t *dstptr; -@@ -763,7 +711,6 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, - register int i; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { - if (!(buf = jas_alloc2(bufsize, JPC_QMFB_COLGRPSIZE * sizeof(jpc_fix_t)))) { -@@ -771,7 +718,6 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, - abort(); - } - } --#endif - - hstartcol = (numrows + 1 - parity) >> 1; - -@@ -821,12 +767,10 @@ void jpc_qmfb_join_colgrp(jpc_fix_t *a, - srcptr += JPC_QMFB_COLGRPSIZE; - } - --#if !defined(HAVE_VLA) - /* If the join buffer was allocated on the heap, free this memory. */ - if (buf != joinbuf) { - jas_free(buf); - } --#endif - - } - -@@ -835,11 +779,7 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, - { - - int bufsize = JPC_CEILDIVPOW2(numrows, 1); --#if !defined(HAVE_VLA) - jpc_fix_t joinbuf[QMFB_JOINBUFSIZE * JPC_QMFB_COLGRPSIZE]; --#else -- jpc_fix_t joinbuf[bufsize * numcols]; --#endif - jpc_fix_t *buf = joinbuf; - jpc_fix_t *srcptr; - jpc_fix_t *dstptr; -@@ -849,7 +789,6 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, - register int i; - int hstartcol; - --#if !defined(HAVE_VLA) - /* Allocate memory for the join buffer from the heap. */ - if (bufsize > QMFB_JOINBUFSIZE) { - if (!(buf = jas_alloc3(bufsize, numcols, sizeof(jpc_fix_t)))) { -@@ -857,7 +796,6 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, - abort(); - } - } --#endif - - hstartcol = (numrows + 1 - parity) >> 1; - -@@ -907,12 +845,10 @@ void jpc_qmfb_join_colres(jpc_fix_t *a, - srcptr += numcols; - } - --#if !defined(HAVE_VLA) - /* If the join buffer was allocated on the heap, free this memory. */ - if (buf != joinbuf) { - jas_free(buf); - } --#endif - - } - diff --git a/gnu/packages/patches/jasper-CVE-2014-9029.patch b/gnu/packages/patches/jasper-CVE-2014-9029.patch deleted file mode 100644 index 72b4cc2dce..0000000000 --- a/gnu/packages/patches/jasper-CVE-2014-9029.patch +++ /dev/null @@ -1,36 +0,0 @@ -Fix CVE-2014-9029 (Heap overflows in libjasper). - -Copied from Fedora. - -http://pkgs.fedoraproject.org/cgit/rpms/jasper.git/tree/jasper-CVE-2014-9029.patch -https://bugzilla.redhat.com/show_bug.cgi?id=1167537 - ---- jasper-1.900.1.orig/src/libjasper/jpc/jpc_dec.c 2014-11-27 12:45:44.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_dec.c 2014-11-27 12:44:58.000000000 +0100 -@@ -1281,7 +1281,7 @@ static int jpc_dec_process_coc(jpc_dec_t - jpc_coc_t *coc = &ms->parms.coc; - jpc_dec_tile_t *tile; - -- if (JAS_CAST(int, coc->compno) > dec->numcomps) { -+ if (JAS_CAST(int, coc->compno) >= dec->numcomps) { - jas_eprintf("invalid component number in COC marker segment\n"); - return -1; - } -@@ -1307,7 +1307,7 @@ static int jpc_dec_process_rgn(jpc_dec_t - jpc_rgn_t *rgn = &ms->parms.rgn; - jpc_dec_tile_t *tile; - -- if (JAS_CAST(int, rgn->compno) > dec->numcomps) { -+ if (JAS_CAST(int, rgn->compno) >= dec->numcomps) { - jas_eprintf("invalid component number in RGN marker segment\n"); - return -1; - } -@@ -1356,7 +1356,7 @@ static int jpc_dec_process_qcc(jpc_dec_t - jpc_qcc_t *qcc = &ms->parms.qcc; - jpc_dec_tile_t *tile; - -- if (JAS_CAST(int, qcc->compno) > dec->numcomps) { -+ if (JAS_CAST(int, qcc->compno) >= dec->numcomps) { - jas_eprintf("invalid component number in QCC marker segment\n"); - return -1; - } diff --git a/gnu/packages/patches/jasper-CVE-2016-1577.patch b/gnu/packages/patches/jasper-CVE-2016-1577.patch deleted file mode 100644 index 75bbd526af..0000000000 --- a/gnu/packages/patches/jasper-CVE-2016-1577.patch +++ /dev/null @@ -1,19 +0,0 @@ -Description: CVE-2016-1577: Prevent double-free in jas_iccattrval_destroy() -Origin: vendor, http://www.openwall.com/lists/oss-security/2016/03/03/12 -Bug-Ubuntu: https://launchpad.net/bugs/1547865 -Bug-Debian: https://bugs.debian.org/816625 -Forwarded: not-needed -Author: Tyler Hicks <tyhicks@canonical.com> -Reviewed-by: Salvatore Bonaccorso <carnil@debian.org> -Last-Update: 2016-03-05 - ---- a/src/libjasper/base/jas_icc.c -+++ b/src/libjasper/base/jas_icc.c -@@ -300,6 +300,7 @@ jas_iccprof_t *jas_iccprof_load(jas_stre - if (jas_iccprof_setattr(prof, tagtabent->tag, attrval)) - goto error; - jas_iccattrval_destroy(attrval); -+ attrval = 0; - } else { - #if 0 - jas_eprintf("warning: skipping unknown tag type\n"); diff --git a/gnu/packages/patches/jasper-CVE-2016-1867.patch b/gnu/packages/patches/jasper-CVE-2016-1867.patch deleted file mode 100644 index 2d2ca6f014..0000000000 --- a/gnu/packages/patches/jasper-CVE-2016-1867.patch +++ /dev/null @@ -1,18 +0,0 @@ -Fix CVE-2016-1867 (Out-of-bounds read in jpc_pi_nextcprl()). - -Copied from SUSE. - -https://bugzilla.suse.com/show_bug.cgi?id=961886 -https://bugzilla.redhat.com/show_bug.cgi?id=1298135 - ---- jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c 2007-01-19 22:43:07.000000000 +0100 -+++ jasper-1.900.1/src/libjasper/jpc/jpc_t2cod.c 2016-01-14 14:22:24.569056412 +0100 -@@ -429,7 +429,7 @@ - } - - for (pi->compno = pchg->compnostart, pi->picomp = -- &pi->picomps[pi->compno]; pi->compno < JAS_CAST(int, pchg->compnoend); ++pi->compno, -+ &pi->picomps[pi->compno]; pi->compno < JAS_CAST(int, pchg->compnoend) && pi->compno < pi->numcomps; ++pi->compno, - ++pi->picomp) { - pirlvl = pi->picomp->pirlvls; - pi->xstep = pi->picomp->hsamp * (1 << (pirlvl->prcwidthexpn + diff --git a/gnu/packages/patches/jasper-CVE-2016-2089.patch b/gnu/packages/patches/jasper-CVE-2016-2089.patch deleted file mode 100644 index 95d4b61111..0000000000 --- a/gnu/packages/patches/jasper-CVE-2016-2089.patch +++ /dev/null @@ -1,90 +0,0 @@ -Description: CVE-2016-2089: matrix rows_ NULL pointer dereference in jas_matrix_clip() -Origin: vendor -Bug-RedHat: https://bugzilla.redhat.com/show_bug.cgi?id=1302636 -Bug-Debian: https://bugs.debian.org/812978 -Forwarded: not-needed -Author: Tomas Hoger <thoger@redhat.com> -Reviewed-by: Salvatore Bonaccorso <carnil@debian.org> -Last-Update: 2016-03-05 - ---- a/src/libjasper/base/jas_image.c -+++ b/src/libjasper/base/jas_image.c -@@ -426,6 +426,10 @@ int jas_image_readcmpt(jas_image_t *imag - return -1; - } - -+ if (!data->rows_) { -+ return -1; -+ } -+ - if (jas_matrix_numrows(data) != height || jas_matrix_numcols(data) != width) { - if (jas_matrix_resize(data, height, width)) { - return -1; -@@ -479,6 +483,10 @@ int jas_image_writecmpt(jas_image_t *ima - return -1; - } - -+ if (!data->rows_) { -+ return -1; -+ } -+ - if (jas_matrix_numrows(data) != height || jas_matrix_numcols(data) != width) { - return -1; - } ---- a/src/libjasper/base/jas_seq.c -+++ b/src/libjasper/base/jas_seq.c -@@ -262,6 +262,10 @@ void jas_matrix_divpow2(jas_matrix_t *ma - int rowstep; - jas_seqent_t *data; - -+ if (!matrix->rows_) { -+ return; -+ } -+ - rowstep = jas_matrix_rowstep(matrix); - for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i, - rowstart += rowstep) { -@@ -282,6 +286,10 @@ void jas_matrix_clip(jas_matrix_t *matri - jas_seqent_t *data; - int rowstep; - -+ if (!matrix->rows_) { -+ return; -+ } -+ - rowstep = jas_matrix_rowstep(matrix); - for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i, - rowstart += rowstep) { -@@ -306,6 +314,10 @@ void jas_matrix_asr(jas_matrix_t *matrix - int rowstep; - jas_seqent_t *data; - -+ if (!matrix->rows_) { -+ return; -+ } -+ - assert(n >= 0); - rowstep = jas_matrix_rowstep(matrix); - for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i, -@@ -325,6 +337,10 @@ void jas_matrix_asl(jas_matrix_t *matrix - int rowstep; - jas_seqent_t *data; - -+ if (!matrix->rows_) { -+ return; -+ } -+ - rowstep = jas_matrix_rowstep(matrix); - for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i, - rowstart += rowstep) { -@@ -367,6 +383,10 @@ void jas_matrix_setall(jas_matrix_t *mat - int rowstep; - jas_seqent_t *data; - -+ if (!matrix->rows_) { -+ return; -+ } -+ - rowstep = jas_matrix_rowstep(matrix); - for (i = matrix->numrows_, rowstart = matrix->rows_[0]; i > 0; --i, - rowstart += rowstep) { diff --git a/gnu/packages/patches/jasper-CVE-2016-2116.patch b/gnu/packages/patches/jasper-CVE-2016-2116.patch deleted file mode 100644 index cdb616fb6a..0000000000 --- a/gnu/packages/patches/jasper-CVE-2016-2116.patch +++ /dev/null @@ -1,19 +0,0 @@ -Description: CVE-2016-2116: Prevent jas_stream_t memory leak in jas_iccprof_createfrombuf() -Origin: vendor, http://www.openwall.com/lists/oss-security/2016/03/03/12 -Bug-Debian: https://bugs.debian.org/816626 -Forwarded: not-needed -Author: Tyler Hicks <tyhicks@canoonical.com> -Reviewed-by: Salvatore Bonaccorso <carnil@debian.org> -Last-Update: 2016-03-05 - ---- a/src/libjasper/base/jas_icc.c -+++ b/src/libjasper/base/jas_icc.c -@@ -1693,6 +1693,8 @@ jas_iccprof_t *jas_iccprof_createfrombuf - jas_stream_close(in); - return prof; - error: -+ if (in) -+ jas_stream_close(in); - return 0; - } - diff --git a/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch b/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch new file mode 100644 index 0000000000..8386cf83fc --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-const-charp-conversion.patch @@ -0,0 +1,17 @@ +Description: Avoid compilation error with gcc-4.4. + "const char* -> char*" conversion is fatal in that version +Origin: vendor, https://bugs.launchpad.net/ubuntu/+source/kobodeluxe/+bug/461373 +Bug-Ubuntu: https://bugs.launchpad.net/ubuntu/+source/kobodeluxe/+bug/461373 +Bug-Debian: http://bugs.debian.org/552548 +Forwarded: http://www.freelists.org/post/olofsonprojects/kobodlpatch-compile-error-in-windowcpp-with-g44 +--- a/graphics/window.cpp ++++ b/graphics/window.cpp +@@ -398,7 +398,7 @@ void window_t::center_token_fxp(int _x, + */ + if(token) + { +- char *tok = strchr(txt, token); ++ const char *tok = strchr(txt, token); + if(tok) + tokpos = tok-txt; + else diff --git a/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch b/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch new file mode 100644 index 0000000000..05cd884b2b --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-enemies-pipe-decl.patch @@ -0,0 +1,67 @@ +# Authhor: Damyan Ivanov <dmn@debian.org> +# Description: rename pipe2 symbol to pipe2_kbdl to avoid clashes with the one +# declared in system unistd.h +# Debian-Bug: 527705 +# Upstream-Report: http://www.freelists.org/post/olofsonprojects/kobodeluxe-failing-to-build-in-Debian-enemiesh75-error-const-enemy-kind-pipe2-redeclared-as-different-kind-of-symbol +--- a/enemies.h ++++ b/enemies.h +@@ -72,7 +72,7 @@ extern const enemy_kind bombdeto; + extern const enemy_kind cannon; + extern const enemy_kind pipe1; + extern const enemy_kind core; +-extern const enemy_kind pipe2; ++extern const enemy_kind pipe2_kbdl; + extern const enemy_kind rock; + extern const enemy_kind ring; + extern const enemy_kind enemy_m1; +@@ -430,7 +430,7 @@ inline int _enemy::realize() + + inline int _enemy::is_pipe() + { +- return ((_state != notuse) && ((ek == &pipe1) || (ek == &pipe2))); ++ return ((_state != notuse) && ((ek == &pipe1) || (ek == &pipe2_kbdl))); + } + + +--- a/enemy.cpp ++++ b/enemy.cpp +@@ -755,10 +755,10 @@ void _enemy::move_core() + + void _enemy::kill_core() + { +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3); +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7); +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1); +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5); + enemies.make(&explosion4, CS2PIXEL(x), CS2PIXEL(y)); + sound.g_base_core_explo(x, y); + release(); +@@ -978,19 +978,19 @@ void _enemy::move_pipe2() + } + p ^= a; + if(p & U_MASK) +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 1); + if(p & R_MASK) +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 3); + if(p & D_MASK) +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 5); + if(p & L_MASK) +- enemies.make(&pipe2, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7); ++ enemies.make(&pipe2_kbdl, CS2PIXEL(x), CS2PIXEL(y), 0, 0, 7); + manage.add_score(10); + release(); + } + + +-const enemy_kind pipe2 = { ++const enemy_kind pipe2_kbdl = { + 0, + &_enemy::make_pipe2, + &_enemy::move_pipe2, diff --git a/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch b/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch new file mode 100644 index 0000000000..d626618cd1 --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-graphics-window-signed-char.patch @@ -0,0 +1,38 @@ +# This was created in responce to Debian bug #163979 +# Thing is, if you want to compant "-1" with a char value, +# you better make that char signed +--- kobodeluxe-0.5.1.orig/graphics/window.cpp ++++ kobodeluxe-0.5.1/graphics/window.cpp +@@ -331,7 +331,7 @@ + } + + +-void window_t::center_token(int _x, int _y, const char *txt, char token) ++void window_t::center_token(int _x, int _y, const char *txt, signed char token) + { + center_token_fxp(PIXEL2CS(_x), PIXEL2CS(_y), txt, token); + } +@@ -374,7 +374,7 @@ + } + + +-void window_t::center_token_fxp(int _x, int _y, const char *txt, char token) ++void window_t::center_token_fxp(int _x, int _y, const char *txt, signed char token) + { + _x = CS2PIXEL((_x * xs + 128) >> 8); + _y = CS2PIXEL((_y * ys + 128) >> 8); +--- kobodeluxe-0.5.1.orig/graphics/window.h ++++ kobodeluxe-0.5.1/graphics/window.h +@@ -265,10 +265,10 @@ + void font(int fnt); + void string(int _x, int _y, const char *txt); + void center(int _y, const char *txt); +- void center_token(int _x, int _y, const char *txt, char token = 0); ++ void center_token(int _x, int _y, const char *txt, signed char token = 0); + void string_fxp(int _x, int _y, const char *txt); + void center_fxp(int _y, const char *txt); +- void center_token_fxp(int _x, int _y, const char *txt, char token = 0); ++ void center_token_fxp(int _x, int _y, const char *txt, signed char token = 0); + int textwidth(const char *txt, int min = 0, int max = 255); + int textwidth_fxp(const char *txt, int min = 0, int max = 255); + int fontheight(); diff --git a/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch b/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch new file mode 100644 index 0000000000..34cab90ec3 --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-manpage-minus-not-hyphen.patch @@ -0,0 +1,15 @@ +# Author: Damyan Ivanov <dmn@debian.org> +# Description: convert a hyphen in kobodl manpage to a minus, which is what is +# inttented here +# Upstream-Report: http://www.freelists.org/post/olofsonprojects/patch-manpage-uses-hyphen-instead-of-a-minus-sign +--- a/kobodl.6 ++++ b/kobodl.6 +@@ -176,7 +176,7 @@ Video Mode. Default: 17200. + Enable Vertical Sync. Default: On. + .TP + .B \-videopages +-Number of Video Pages. Default: -1. ++Number of Video Pages. Default: \-1. + .TP + .B \-scalemode + Scaling Filter Mode. Default: 1. diff --git a/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch b/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch new file mode 100644 index 0000000000..3348348ced --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-midicon-segmentation-fault.patch @@ -0,0 +1,24 @@ +From: Emile CARRY <emile.carry@sequanux.org> +Date: Wed, 6 Apr 2016 00:27:17 +0200 +Subject: midicon segmentation fault + +Debian-Bug: https://bugs.debian.org/819897 +Forwarded: no +--- + sound/a_midicon.c | 2 +- + 1 file changed, 1 insertion(+), 1 deletion(-) + +diff --git a/sound/a_midicon.c b/sound/a_midicon.c +index 57de3cf..ded2988 100644 +--- a/sound/a_midicon.c ++++ b/sound/a_midicon.c +@@ -120,8 +120,8 @@ static inline void __press(unsigned ch, unsigned key) + { + m[ch].next[key] = -1; + m[ch].prev[key] = m[ch].last; +- m[ch].next[m[ch].last] = (char)key; + m[ch].last = (char)key; ++ m[ch].next[m[ch].last] = (char)key; + } + + diff --git a/gnu/packages/patches/kobodeluxe-paths.patch b/gnu/packages/patches/kobodeluxe-paths.patch new file mode 100644 index 0000000000..ac8ee67906 --- /dev/null +++ b/gnu/packages/patches/kobodeluxe-paths.patch @@ -0,0 +1,43 @@ +# Patch snarfed from +# http://http.debian.net/debian/pool/main/k/kobodeluxe/kobodeluxe_0.5.1-8.debian.tar.xz +# +# Disable reading of configs, graphics, and data from the current directory. +# So it's safe to run kobodeluxe from anywhere w/o worry about an attacker +# feeding it bad data. +--- kobodeluxe-0.5.1.orig/kobo.cpp ++++ kobodeluxe-0.5.1/kobo.cpp +@@ -141,21 +141,21 @@ + * Graphics data + */ + /* Current dir; from within the build tree */ +- fmap->addpath("GFX", "./data/gfx"); ++ //fmap->addpath("GFX", "./data/gfx"); + /* Real data dir */ + fmap->addpath("GFX", "DATA>>gfx"); + /* Current dir */ +- fmap->addpath("GFX", "./gfx"); ++ //fmap->addpath("GFX", "./gfx"); + + /* + * Sound data + */ + /* Current dir; from within the build tree */ +- fmap->addpath("SFX", "./data/sfx"); ++ //fmap->addpath("SFX", "./data/sfx"); + /* Real data dir */ + fmap->addpath("SFX", "DATA>>sfx"); + /* Current dir */ +- fmap->addpath("SFX", "./sfx"); ++ //fmap->addpath("SFX", "./sfx"); + + /* + * Score files (user and global) +@@ -173,7 +173,7 @@ + /* System local */ + fmap->addpath("CONFIG", SYSCONF_DIR); + /* In current dir (last resort) */ +- fmap->addpath("CONFIG", "./"); ++ //fmap->addpath("CONFIG", "./"); + } + + diff --git a/gnu/packages/patches/torsocks-dns-test.patch b/gnu/packages/patches/torsocks-dns-test.patch deleted file mode 100644 index ba70ba5933..0000000000 --- a/gnu/packages/patches/torsocks-dns-test.patch +++ /dev/null @@ -1,18 +0,0 @@ -Skip DNS tests that rely on the ability to look up arbitary -host names. - ---- torsocks/tests/test_dns.c 2015-11-10 18:30:53.955941984 +0100 -+++ torsocks/tests/test_dns.c 2015-11-10 18:31:02.199941892 +0100 -@@ -134,11 +134,8 @@ static void test_getaddrinfo(const struc - int main(int argc, char **argv) - { - /* Libtap call for the number of tests planned. */ -- plan_tests(NUM_TESTS); -+ plan_tests(1); - -- test_getaddrinfo(&tor_check); -- test_gethostbyname(&tor_dir_auth1); -- test_gethostbyaddr(&tor_dir_auth2); - test_getaddrinfo(&tor_localhost); - - return 0; diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm index 0e648cd724..b5bc499f89 100644 --- a/gnu/packages/python.scm +++ b/gnu/packages/python.scm @@ -980,7 +980,7 @@ Python file, so it can be easily copied into your project.") (build-system python-build-system) (inputs `(("python-six" ,python-six))) - (home-page "http://labix.org/python-dateutil") + (home-page "https://dateutil.readthedocs.io/en/stable/") (synopsis "Extensions to the standard datetime module") (description "The dateutil module provides powerful extensions to the standard @@ -1010,7 +1010,7 @@ datetime module, available in Python 2.3+.") (build-system python-build-system) (inputs `(("python-setuptools" ,python-setuptools))) - (home-page "http://labix.org/python-dateutil") + (home-page "https://dateutil.readthedocs.io/en/stable/") (synopsis "Extensions to the standard datetime module") (description "The dateutil module provides powerful extensions to the standard diff --git a/gnu/packages/scheme.scm b/gnu/packages/scheme.scm index 9ad9e707e7..41a7bf5328 100644 --- a/gnu/packages/scheme.scm +++ b/gnu/packages/scheme.scm @@ -591,160 +591,6 @@ an isolated heap allowing multiple VMs to run simultaneously in different OS threads.") (license bsd-3))) -(define nanopass - (let ((version "1.9")) - (origin - (method url-fetch) - (uri (string-append - "https://github.com/nanopass/nanopass-framework-scheme/archive" - "/v" version ".tar.gz")) - (sha256 (base32 "11pwyy4jiwhcl2am3a4ciczacjbjkyvdizqzdglb3l1hj2gj6nv2")) - (file-name (string-append "nanopass-" version ".tar.gz"))))) - -(define stex - (let ((version "1.2.1")) - (origin - (method url-fetch) - (uri (string-append - "https://github.com/dybvig/stex/archive" - "/v" version ".tar.gz")) - (sha256 (base32 "03pl3f668h24dn51vccr1sj5lsba9zq3j37bnxjvdadcdaj4qy5z")) - (file-name (string-append "stex-" version ".tar.gz"))))) - -(define-public chez-scheme - (package - (name "chez-scheme") - (version "9.4") - (source - (origin - (method url-fetch) - (uri (string-append "https://github.com/cisco/ChezScheme/archive/" - "v" version ".tar.gz")) - (sha256 - (base32 "0lprmpsjg2plc6ykgkz482zyvhkzv6gd0vnar71ph21h6zknyklz")) - (file-name (string-append "chez-scheme-" version ".tar.gz")))) - (build-system gnu-build-system) - (inputs - `(("ncurses" ,ncurses) - ("libx11" ,libx11) - ("xorg-rgb" ,xorg-rgb) - ("nanopass" ,nanopass) - ("zlib" ,zlib) - ("stex" ,stex))) - (native-inputs - `(("texlive" ,texlive) - ("ghostscript" ,ghostscript) - ("netpbm" ,netpbm))) - (outputs '("out" "doc")) - (arguments - `(#:modules ((guix build gnu-build-system) - (guix build utils) - (ice-9 match)) - #:test-target "test" - #:phases - (modify-phases %standard-phases - ;; Adapt the custom 'configure' script. - (replace 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (nanopass (assoc-ref inputs "nanopass")) - (stex (assoc-ref inputs "stex")) - (zlib (assoc-ref inputs "zlib")) - (unpack (assoc-ref %standard-phases 'unpack)) - (patch-source-shebangs - (assoc-ref %standard-phases 'patch-source-shebangs))) - (map (match-lambda - ((src orig-name new-name) - (with-directory-excursion "." - (apply unpack (list #:source src)) - (apply patch-source-shebangs (list #:source src))) - (delete-file-recursively new-name) - (system* "mv" orig-name new-name))) - `((,nanopass "nanopass-framework-scheme-1.9" "nanopass") - (,stex "stex-1.2.1" "stex"))) - ;; The Makefile wants to download and compile "zlib". We patch - ;; it to use the one from our 'zlib' package. - (substitute* "configure" - (("rmdir zlib .*$") "echo \"using system zlib\"\n")) - (substitute* (find-files "./c" "Mf-[a-zA-Z0-9.]+") - (("\\$\\{Kernel\\}: \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a") - "${Kernel}: ${kernelobj}") - (("ld -melf_x86_64 -r -X -o \\$\\{Kernel\\} \\$\\{kernelobj\\} \\.\\./zlib/libz\\.a") - (string-append "ld -melf_x86_64 -r -X -o ${Kernel} ${kernelobj} " - zlib "/lib/libz.a")) - (("\\(cd \\.\\./zlib; CFLAGS=-m64 \\./configure --64)") - (which "true")) - (("(cd \\.\\./zlib; make)") - (which "true"))) - (substitute* (find-files "mats" "Mf-.*") - (("^[[:space:]]+(cc ) *") "\tgcc ")) - (substitute* - (find-files "." (string-append - "(" - "Mf-[a-zA-Z0-9.]+" - "|Makefile[a-zA-Z0-9.]*" - "|checkin" - "|stex\\.stex" - "|newrelease" - "|workarea" - ;;"|[a-zA-Z0-9.]+\\.ms" ; guile can't read - ")")) - (("/bin/rm") (which "rm")) - (("/bin/ln") (which "ln")) - (("/bin/cp") (which "cp"))) - (substitute* "makefiles/installsh" - (("/bin/true") (which "true"))) - (substitute* "stex/Makefile" - (("PREFIX=/usr") (string-append "PREFIX=" out))) - (zero? (system* "./configure" "--threads" - (string-append "--installprefix=" out)))))) - ;; Installation of the documentation requires a running "chez". - (add-after 'install 'install-doc - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((bin (string-append (assoc-ref outputs "out") "/bin")) - (doc (string-append (assoc-ref outputs "doc") - "/share/doc/" ,name "-" ,version))) - (setenv "HOME" (getcwd)) - (setenv "PATH" (string-append (getenv "PATH") ":" bin)) - (with-directory-excursion "stex" - (system* "make" (string-append "BIN=" bin))) - (system* "make" "docs") - (with-directory-excursion "csug" - (substitute* "Makefile" - (("/tmp/csug9") doc) - (("^m = a6le") - "m := $(shell echo '(machine-type)' | scheme -q)")) - (system* "make" "install") - (install-file "csug.pdf" doc)) - (with-directory-excursion "release_notes" - (install-file "release_notes.pdf" doc)) - #t))) - ;; The binary file name is called "scheme" as the one from MIT/GNU - ;; Scheme. We add a symlink to use in case both are installed. - (add-after 'install 'install-symlink - (lambda* (#:key outputs #:allow-other-keys) - (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin")) - (lib (string-append out "/lib")) - (name "chez-scheme")) - (symlink (string-append bin "/scheme") - (string-append bin "/" name)) - (map (lambda (file) - (symlink file (string-append (dirname file) - "/" name ".boot"))) - (find-files lib "scheme.boot")) - #t)))))) - ;; According to the documentation MIPS and ARM are not supported. - (supported-systems '("x86_64-linux" "i686-linux")) - (home-page "http://www.scheme.com") - (synopsis "R6RS Scheme compiler and run-time") - (description - "Chez Scheme is a compiler and run-time system for the language of the -Revised^6 Report on Scheme (R6RS), with numerous extensions. The compiler -generates native code for each target processor, with support for x86, x86_64, -and 32-bit PowerPC architectures.") - (license asl2.0))) - (define-public scmutils (let () (define (system-suffix) diff --git a/gnu/packages/tor.scm b/gnu/packages/tor.scm index 42d882e4bc..e6fbf6e005 100644 --- a/gnu/packages/tor.scm +++ b/gnu/packages/tor.scm @@ -30,7 +30,6 @@ #:use-module (gnu packages libevent) #:use-module (gnu packages compression) #:use-module (gnu packages pcre) - #:use-module (gnu packages perl) #:use-module (gnu packages python) #:use-module (gnu packages qt) #:use-module (gnu packages autotools) @@ -40,14 +39,14 @@ (define-public tor (package (name "tor") - (version "0.2.8.8") + (version "0.2.8.9") (source (origin (method url-fetch) (uri (string-append "https://dist.torproject.org/tor-" version ".tar.gz")) (sha256 (base32 - "1pp3h0a1cl25fv04b3j6wp8aw1sfpbd2lmag397dpp2k2b305bxi")))) + "05jkvhbgyq81fcmk1xpl3yw97ljj5sg9pngl27zlmgl7p0xjfp1z")))) (build-system gnu-build-system) (native-inputs `(("python" ,python-2))) ; for tests @@ -73,28 +72,16 @@ applications based on the TCP protocol.") (define-public torsocks (package (name "torsocks") - (version "2.0.0") + (version "2.2.0") (source (origin - (method git-fetch) - (uri (git-reference - (url "https://git.torproject.org/torsocks.git") - (commit (string-append "v" version)))) + (method url-fetch) + (uri (string-append "https://people.torproject.org/~dgoulet/" + name "/" name "-" version ".tar.xz")) (sha256 (base32 - "0an2q5ail9z414riyjbkjkm29504hy778j914baz2gn5hlv2cfak")) - (file-name (string-append name "-" version "-checkout")) - (patches (search-patches "torsocks-dns-test.patch")))) + "0byr9ga9w79qz4vp0m11sbmspad7fsal9wm67r4znzb7zb7cis19")))) (build-system gnu-build-system) - (arguments - '(#:phases (modify-phases %standard-phases - (add-before 'configure 'bootstrap - (lambda _ - (system* "autoreconf" "-vfi")))))) - (native-inputs `(("autoconf" ,(autoconf-wrapper)) - ("automake" ,automake) - ("libtool" ,libtool) - ("perl-test-harness" ,perl-test-harness))) - (home-page "http://www.torproject.org/") + (home-page "https://www.torproject.org/") (synopsis "Use socks-friendly applications with Tor") (description "Torsocks allows you to use most socks-friendly applications in a safe diff --git a/gnu/packages/video.scm b/gnu/packages/video.scm index 6d59ccc490..cded1bf4d0 100644 --- a/gnu/packages/video.scm +++ b/gnu/packages/video.scm @@ -1253,7 +1253,7 @@ capabilities.") (define-public vapoursynth (package (name "vapoursynth") - (version "33.1") + (version "34") (source (origin (method url-fetch) (uri (string-append @@ -1262,7 +1262,7 @@ capabilities.") (file-name (string-append name "-" version)) (sha256 (base32 - "1504jaw4yqdlyls0bz9f90rvqq7cy1jvmrnhdvwnmdfbpikqwi4c")))) + "0rfldphg4gy3sdfffi5yzklqz93vsj2j6nny8snjbavnf161blyi")))) (build-system gnu-build-system) (native-inputs `(("autoconf" ,autoconf) diff --git a/gnu/packages/zile.scm b/gnu/packages/zile.scm index f1c03fb64c..13a5440eea 100644 --- a/gnu/packages/zile.scm +++ b/gnu/packages/zile.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2012, 2013 Ludovic Courtès <ludo@gnu.org> ;;; Copyright © 2014 Eric Bavier <bavier@member.fsf.org> +;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> ;;; ;;; This file is part of GNU Guix. ;;; @@ -32,25 +33,26 @@ (define-public zile (package (name "zile") - (version "2.4.11") + (version "2.4.13") (source (origin (method url-fetch) (uri (string-append "mirror://gnu/zile/zile-" version ".tar.gz")) (sha256 (base32 - "1k593y1xzvlj52q0gyhcx2lllws4sg84b8r9pcginjb1vjypplhz")))) + "03mcg0bxkzprlsx8y6h22w924pzx4a9zr7zm3g11j8j3x9lz75f7")))) (build-system gnu-build-system) (arguments - '(#:phases (alist-cons-before - 'configure 'patch-/bin/sh - (lambda* (#:key inputs #:allow-other-keys) - (let ((bash (assoc-ref inputs "bash"))) - ;; Refer to the actual shell. - (substitute* '("lib/spawni.c" "src/funcs.c") - (("/bin/sh") - (string-append bash "/bin/sh"))))) - %standard-phases))) + '(#:phases + (modify-phases %standard-phases + (add-before 'configure 'patch-/bin/sh + (lambda* (#:key inputs #:allow-other-keys) + (let ((bash (assoc-ref inputs "bash"))) + ;; Refer to the actual shell. + (substitute* '("lib/spawni.c" "src/funcs.c") + (("/bin/sh") + (string-append bash "/bin/sh"))) + #t)))))) (inputs `(("boehm-gc" ,libgc) ("ncurses" ,ncurses) @@ -59,7 +61,7 @@ `(("perl" ,perl) ("help2man" ,help2man) ("pkg-config" ,pkg-config))) - (home-page "http://www.gnu.org/software/zile/") + (home-page "https://www.gnu.org/software/zile/") (synopsis "Lightweight Emacs clone") (description "GNU Zile is a lightweight Emacs clone. It usage is similar to the diff --git a/guix/build/graft.scm b/guix/build/graft.scm index 7025b72fea..16df169ec7 100644 --- a/guix/build/graft.scm +++ b/guix/build/graft.scm @@ -307,11 +307,6 @@ file name pairs." (else (error "unsupported file type" stat))))) - ;; XXX: Work around occasional "suspicious ownership or permission" daemon - ;; errors that arise when we create the top-level /gnu/store/… directory as - ;; #o777. - (umask #o022) - ;; Use 'exit-on-exception' to force an exit upon I/O errors, given that ;; 'n-par-for-each' silently swallows exceptions. ;; See <http://bugs.gnu.org/23581>. diff --git a/guix/derivations.scm b/guix/derivations.scm index 7f74ed6c77..e378a7cb03 100644 --- a/guix/derivations.scm +++ b/guix/derivations.scm @@ -23,7 +23,7 @@ #:use-module (srfi srfi-26) #:use-module (srfi srfi-34) #:use-module (srfi srfi-35) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (rnrs bytevectors) #:use-module (ice-9 match) #:use-module (ice-9 rdelim) @@ -885,7 +885,7 @@ recursively." (define (substitute-file file initial replacements) (define contents (with-fluids ((%default-port-encoding #f)) - (call-with-input-file file get-string-all))) + (call-with-input-file file read-string))) (let ((updated (substitute contents initial replacements))) (if (string=? updated contents) diff --git a/guix/ftp-client.scm b/guix/ftp-client.scm index 22d4c7dde2..0a179282ed 100644 --- a/guix/ftp-client.scm +++ b/guix/ftp-client.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2010, 2011, 2012, 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,7 +22,7 @@ #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) #:use-module (srfi srfi-31) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (rnrs bytevectors) #:use-module (ice-9 match) #:use-module (ice-9 regex) diff --git a/guix/grafts.scm b/guix/grafts.scm index 80ae27e9b0..dda7c1d235 100644 --- a/guix/grafts.scm +++ b/guix/grafts.scm @@ -280,8 +280,19 @@ derivations to the corresponding set of grafts." (let* ((new (graft-derivation/shallow store drv applicable #:guile guile #:system system)) - (grafts (cons (graft (origin drv) (replacement new)) - grafts))) + + ;; Replace references to any of the outputs of DRV, + ;; even if that's more than needed. This is so that + ;; the result refers only to the outputs of NEW and + ;; not to those of DRV. + (grafts (append (map (lambda (output) + (graft + (origin drv) + (origin-output output) + (replacement new) + (replacement-output output))) + (derivation-output-names drv)) + grafts))) (return/cache cache grafts)))))))))))) (define* (graft-derivation store drv grafts diff --git a/guix/hash.scm b/guix/hash.scm index a61dc980e6..44e4472580 100644 --- a/guix/hash.scm +++ b/guix/hash.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2012, 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2012, 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -19,7 +19,7 @@ (define-module (guix hash) #:use-module (guix gcrypt) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (system foreign) #:use-module ((guix build utils) #:select (dump-port)) #:use-module (srfi srfi-11) diff --git a/guix/http-client.scm b/guix/http-client.scm index 97a1e26d3e..a8324be09f 100644 --- a/guix/http-client.scm +++ b/guix/http-client.scm @@ -28,7 +28,7 @@ #:use-module (srfi srfi-34) #:use-module (srfi srfi-35) #:use-module (ice-9 match) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (rnrs bytevectors) #:use-module (guix ui) #:use-module (guix utils) diff --git a/guix/pki.scm b/guix/pki.scm index 3cd9763fdf..1551425c33 100644 --- a/guix/pki.scm +++ b/guix/pki.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2016 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,7 +22,8 @@ #:use-module ((guix utils) #:select (with-atomic-file-output)) #:use-module ((guix build utils) #:select (mkdir-p)) #:use-module (ice-9 match) - #:use-module (rnrs io ports) + #:use-module (ice-9 rdelim) + #:use-module (ice-9 binary-ports) #:export (%public-key-file %private-key-file %acl-file @@ -80,7 +81,7 @@ element in KEYS must be a canonical sexp with type 'public-key'." (when (file-exists? %public-key-file) (let ((public-key (call-with-input-file %public-key-file (compose string->canonical-sexp - get-string-all)))) + read-string)))) (mkdir-p (dirname %acl-file)) (with-atomic-file-output %acl-file (lambda (port) @@ -99,7 +100,7 @@ element in KEYS must be a canonical sexp with type 'public-key'." (call-with-input-file %acl-file (compose canonical-sexp->sexp string->canonical-sexp - get-string-all)) + read-string)) (public-keys->acl '()))) ; the empty ACL (define (acl->public-keys acl) diff --git a/guix/scripts/archive.scm b/guix/scripts/archive.scm index 8c7322d617..400353247c 100644 --- a/guix/scripts/archive.scm +++ b/guix/scripts/archive.scm @@ -40,7 +40,7 @@ #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) #:use-module (srfi srfi-37) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:export (guix-archive)) @@ -290,7 +290,7 @@ the input port." (define (read-key) (catch 'gcry-error (lambda () - (string->canonical-sexp (get-string-all (current-input-port)))) + (string->canonical-sexp (read-string (current-input-port)))) (lambda (key proc err) (leave (_ "failed to read public key: ~a: ~a~%") (error-source err) (error-string err))))) diff --git a/guix/scripts/authenticate.scm b/guix/scripts/authenticate.scm index eedebb4bac..d9f799df26 100644 --- a/guix/scripts/authenticate.scm +++ b/guix/scripts/authenticate.scm @@ -1,5 +1,5 @@ ;;; GNU Guix --- Functional package management for GNU -;;; Copyright © 2013, 2014, 2015 Ludovic Courtès <ludo@gnu.org> +;;; Copyright © 2013, 2014, 2015, 2016 Ludovic Courtès <ludo@gnu.org> ;;; ;;; This file is part of GNU Guix. ;;; @@ -22,7 +22,8 @@ #:use-module (guix pk-crypto) #:use-module (guix pki) #:use-module (guix ui) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) + #:use-module (ice-9 rdelim) #:use-module (ice-9 match) #:export (guix-authenticate)) @@ -36,12 +37,12 @@ (define read-canonical-sexp ;; Read a gcrypt sexp from a port and return it. - (compose string->canonical-sexp get-string-all)) + (compose string->canonical-sexp read-string)) (define (read-hash-data port key-type) "Read sha256 hash data from PORT and return it as a gcrypt sexp. KEY-TYPE is a symbol representing the type of public key algo being used." - (let* ((hex (get-string-all port)) + (let* ((hex (read-string port)) (bv (base16-string->bytevector (string-trim-both hex)))) (bytevector->hash-data bv #:key-type key-type))) diff --git a/guix/scripts/build.scm b/guix/scripts/build.scm index b64138ec0e..8c2c4902fc 100644 --- a/guix/scripts/build.scm +++ b/guix/scripts/build.scm @@ -179,27 +179,48 @@ matching URIs given in SOURCES." (_ obj))))) +(define (evaluate-replacement-specs specs proc) + "Parse SPECS, a list of strings like \"guile=guile@2.1\", and invoke PROC on +each package pair specified by SPECS. Return the resulting list. Raise an +error if an element of SPECS uses invalid syntax, or if a package it refers to +could not be found." + (define not-equal + (char-set-complement (char-set #\=))) + + (map (lambda (spec) + (match (string-tokenize spec not-equal) + ((old new) + (proc (specification->package old) + (specification->package new))) + (x + (leave (_ "invalid replacement specification: ~s~%") spec)))) + specs)) + (define (transform-package-inputs replacement-specs) "Return a procedure that, when passed a package, replaces its direct dependencies according to REPLACEMENT-SPECS. REPLACEMENT-SPECS is a list of -strings like \"guile=guile@2.1\" meaning that, any direct dependency on a -package called \"guile\" must be replaced with a dependency on a version 2.1 -of \"guile\"." - (define not-equal - (char-set-complement (char-set #\=))) +strings like \"guile=guile@2.1\" meaning that, any dependency on a package +called \"guile\" must be replaced with a dependency on a version 2.1 of +\"guile\"." + (let* ((replacements (evaluate-replacement-specs replacement-specs cons)) + (rewrite (package-input-rewriting replacements))) + (lambda (store obj) + (if (package? obj) + (rewrite obj) + obj)))) - (define replacements - ;; List of name/package pairs. - (map (lambda (spec) - (match (string-tokenize spec not-equal) - ((old new) - (cons (specification->package old) - (specification->package new))) - (x - (leave (_ "invalid replacement specification: ~s~%") spec)))) - replacement-specs)) - - (let ((rewrite (package-input-rewriting replacements))) +(define (transform-package-inputs/graft replacement-specs) + "Return a procedure that, when passed a package, replaces its direct +dependencies according to REPLACEMENT-SPECS. REPLACEMENT-SPECS is a list of +strings like \"gnutls=gnutls@3.5.4\" meaning that packages are built using the +current 'gnutls' package, after which version 3.5.4 is grafted onto them." + (define (replacement-pair old new) + (cons old + (package (inherit old) (replacement new)))) + + (let* ((replacements (evaluate-replacement-specs replacement-specs + replacement-pair)) + (rewrite (package-input-rewriting replacements))) (lambda (store obj) (if (package? obj) (rewrite obj) @@ -211,20 +232,22 @@ of \"guile\"." ;; procedure; it is called with two arguments: the store, and a list of ;; things to build. `((with-source . ,transform-package-source) - (with-input . ,transform-package-inputs))) + (with-input . ,transform-package-inputs) + (with-graft . ,transform-package-inputs/graft))) (define %transformation-options ;; The command-line interface to the above transformations. - (list (option '("with-source") #t #f - (lambda (opt name arg result . rest) - (apply values - (cons (alist-cons 'with-source arg result) - rest)))) - (option '("with-input") #t #f - (lambda (opt name arg result . rest) - (apply values - (cons (alist-cons 'with-input arg result) - rest)))))) + (let ((parser (lambda (symbol) + (lambda (opt name arg result . rest) + (apply values + (alist-cons symbol arg result) + rest))))) + (list (option '("with-source") #t #f + (parser 'with-source)) + (option '("with-input") #t #f + (parser 'with-input)) + (option '("with-graft") #t #f + (parser 'with-graft))))) (define (show-transformation-options-help) (display (_ " @@ -232,7 +255,10 @@ of \"guile\"." use SOURCE when building the corresponding package")) (display (_ " --with-input=PACKAGE=REPLACEMENT - replace dependency PACKAGE by REPLACEMENT"))) + replace dependency PACKAGE by REPLACEMENT")) + (display (_ " + --with-graft=PACKAGE=REPLACEMENT + graft REPLACEMENT on packages that refer to PACKAGE"))) (define (options->transformation opts) diff --git a/guix/scripts/download.scm b/guix/scripts/download.scm index 1648198f6e..bcb4eaa043 100644 --- a/guix/scripts/download.scm +++ b/guix/scripts/download.scm @@ -31,7 +31,7 @@ #:use-module (srfi srfi-1) #:use-module (srfi srfi-37) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:export (guix-download)) diff --git a/guix/scripts/hash.scm b/guix/scripts/hash.scm index a6eced92fb..b269ead50f 100644 --- a/guix/scripts/hash.scm +++ b/guix/scripts/hash.scm @@ -25,7 +25,7 @@ #:use-module (guix ui) #:use-module (guix scripts) #:use-module (guix utils) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (rnrs files) #:use-module (ice-9 match) #:use-module (srfi srfi-1) @@ -137,7 +137,7 @@ and 'hexadecimal' can be used as well).\n")) (if (assoc-ref opts 'recursive?) (let-values (((port get-hash) (open-sha256-port))) (write-file file port #:select? select?) - (flush-output-port port) + (force-output port) (get-hash)) (call-with-input-file file port-sha256)))) diff --git a/guix/scripts/lint.scm b/guix/scripts/lint.scm index b3ec6d628e..d6281eae64 100644 --- a/guix/scripts/lint.scm +++ b/guix/scripts/lint.scm @@ -142,6 +142,10 @@ monad." "Return #t if S starts with what looks like an abbreviation or acronym." (string-match "^[A-Z][A-Z0-9]+\\>" s)) +(define %quoted-identifier-rx + ;; A quoted identifier, like 'this'. + (make-regexp "['`][[:graph:]]+'")) + (define (check-description-style package) ;; Emit a warning if stylistic issues are found in the description of PACKAGE. (define (check-not-empty description) @@ -173,6 +177,16 @@ trademark sign '~a' at ~d") 'description)) (else #t))) + (define (check-quotes description) + "Check whether DESCRIPTION contains single quotes and suggest @code." + (when (regexp-exec %quoted-identifier-rx description) + (emit-warning package + + ;; TRANSLATORS: '@code' is Texinfo markup and must be kept + ;; as is. + (_ "use @code or similar ornament instead of quotes") + 'description))) + (define (check-proper-start description) (unless (or (properly-starts-sentence? description) (string-prefix-ci? (package-name package) description)) @@ -203,6 +217,7 @@ by two spaces; possible infraction~p at ~{~a~^, ~}") (if (string? description) (begin (check-not-empty description) + (check-quotes description) (check-trademarks description) ;; Use raw description for this because Texinfo rendering ;; automatically fixes end of sentence space. diff --git a/guix/scripts/offload.scm b/guix/scripts/offload.scm index b278f1e313..33d141e7ef 100644 --- a/guix/scripts/offload.scm +++ b/guix/scripts/offload.scm @@ -21,7 +21,8 @@ #:use-module (guix records) #:use-module (guix store) #:use-module (guix derivations) - #:use-module (guix serialization) + #:use-module ((guix serialization) + #:select (nar-error? nar-error-file)) #:use-module (guix nar) #:use-module (guix utils) #:use-module ((guix build syscalls) #:select (fcntl-flock)) @@ -37,7 +38,7 @@ #:use-module (ice-9 match) #:use-module (ice-9 regex) #:use-module (ice-9 format) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:export (build-machine build-requirements guix-offload)) @@ -336,7 +337,7 @@ hook." (let ((pipe (remote-pipe machine OPEN_READ `("guile" "-c" ,(object->string script))))) - (get-string-all pipe) + (read-string pipe) (let ((status (close-pipe pipe))) (unless (zero? status) ;; Better be safe than sorry: if we ignore the error here, then FILE @@ -368,7 +369,7 @@ hook." (let ((pipe (remote-pipe machine OPEN_READ `("guile" "-c" ,(object->string script))))) - (get-string-all pipe) + (read-string pipe) (close-pipe pipe))) (define* (offload drv machine @@ -462,7 +463,7 @@ success, #f otherwise." '("guix" "archive" "--missing"))) (open-input-string files))) ((result) - (get-string-all missing))) + (read-string missing))) (for-each waitpid pids) (string-tokenize result))) diff --git a/guix/scripts/publish.scm b/guix/scripts/publish.scm index 8404e540f8..1b32f639ea 100644 --- a/guix/scripts/publish.scm +++ b/guix/scripts/publish.scm @@ -23,7 +23,7 @@ #:use-module (ice-9 format) #:use-module (ice-9 match) #:use-module (ice-9 regex) - #:use-module (rnrs io ports) + #:use-module (ice-9 rdelim) #:use-module (rnrs bytevectors) #:use-module (srfi srfi-1) #:use-module (srfi srfi-2) @@ -46,7 +46,7 @@ #:use-module (guix pki) #:use-module (guix pk-crypto) #:use-module (guix store) - #:use-module (guix serialization) + #:use-module ((guix serialization) #:select (write-file)) #:use-module (guix zlib) #:use-module (guix ui) #:use-module (guix scripts) @@ -167,7 +167,7 @@ compression disabled~%")) (delay (call-with-input-file file (compose string->canonical-sexp - get-string-all)))) + read-string)))) (define %private-key (lazy-read-file-sexp %private-key-file)) diff --git a/guix/scripts/refresh.scm b/guix/scripts/refresh.scm index 84e2a8f2a6..b81c69f9fe 100644 --- a/guix/scripts/refresh.scm +++ b/guix/scripts/refresh.scm @@ -50,7 +50,7 @@ #:use-module (srfi srfi-11) #:use-module (srfi srfi-26) #:use-module (srfi srfi-37) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:export (guix-refresh %updaters)) diff --git a/guix/scripts/substitute.scm b/guix/scripts/substitute.scm index 8f50477801..3d6fde0188 100755 --- a/guix/scripts/substitute.scm +++ b/guix/scripts/substitute.scm @@ -24,7 +24,7 @@ #:use-module (guix combinators) #:use-module (guix config) #:use-module (guix records) - #:use-module (guix serialization) + #:use-module ((guix serialization) #:select (restore-file)) #:use-module (guix hash) #:use-module (guix base32) #:use-module (guix base64) @@ -43,7 +43,6 @@ #:use-module (ice-9 format) #:use-module (ice-9 ftw) #:use-module (ice-9 binary-ports) - #:use-module (rnrs io ports) #:use-module (rnrs bytevectors) #:use-module (srfi srfi-1) #:use-module (srfi srfi-9) @@ -938,7 +937,7 @@ DESTINATION as a nar file. Verify the substitute against ACL." (and (file-exists? %public-key-file) (let ((key (call-with-input-file %public-key-file (compose string->canonical-sexp - get-string-all)))) + read-string)))) (match acl ((thing) (equal? (canonical-sexp->string thing) diff --git a/guix/serialization.scm b/guix/serialization.scm index f17f516c09..5953b84616 100644 --- a/guix/serialization.scm +++ b/guix/serialization.scm @@ -19,11 +19,12 @@ (define-module (guix serialization) #:use-module (guix combinators) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) #:use-module (srfi srfi-1) #:use-module (srfi srfi-26) #:use-module (srfi srfi-34) #:use-module (srfi srfi-35) + #:use-module (ice-9 binary-ports) + #:use-module ((ice-9 rdelim) #:prefix rdelim:) #:use-module (ice-9 match) #:use-module (ice-9 ftw) #:export (write-int read-int @@ -143,7 +144,7 @@ substitute invalid byte sequences with question marks. This is a (port (open-bytevector-input-port bv))) (set-port-encoding! port "UTF-8") (set-port-conversion-strategy! port 'substitute) - (get-string-all port))) + (rdelim:read-string port))) (define (write-string-list l p) (write-int (length l) p) diff --git a/guix/store.scm b/guix/store.scm index 9f409b4209..43cfda9214 100644 --- a/guix/store.scm +++ b/guix/store.scm @@ -25,7 +25,7 @@ #:autoload (guix base32) (bytevector->base32-string) #:autoload (guix build syscalls) (terminal-columns) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (srfi srfi-1) #:use-module (srfi srfi-9) #:use-module (srfi srfi-9 gnu) @@ -481,7 +481,7 @@ encoding conversion errors." (let ((s (read-maybe-utf8-string p))) (display s (current-build-output-port)) (when (string-any %newlines s) - (flush-output-port (current-build-output-port))) + (force-output (current-build-output-port))) #f)) ((= k %stderr-error) ;; Report an error. diff --git a/guix/tests.scm b/guix/tests.scm index 3cb4a671af..5110075e7d 100644 --- a/guix/tests.scm +++ b/guix/tests.scm @@ -27,7 +27,7 @@ #:use-module (gnu packages bootstrap) #:use-module (srfi srfi-34) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) #:use-module (web uri) #:export (open-connection-for-tests random-text diff --git a/guix/utils.scm b/guix/utils.scm index decadf64a6..65a2baa0a2 100644 --- a/guix/utils.scm +++ b/guix/utils.scm @@ -30,7 +30,8 @@ #:use-module (srfi srfi-39) #:use-module (srfi srfi-60) #:use-module (rnrs bytevectors) - #:use-module (rnrs io ports) + #:use-module (ice-9 binary-ports) + #:autoload (rnrs io ports) (make-custom-binary-input-port) #:use-module ((rnrs bytevectors) #:select (bytevector-u8-set!)) #:use-module (guix combinators) #:use-module ((guix build utils) #:select (dump-port)) diff --git a/tests/containers.scm b/tests/containers.scm index bbcff3f51f..698bef3e47 100644 --- a/tests/containers.scm +++ b/tests/containers.scm @@ -162,4 +162,13 @@ (waitpid pid) (zero? result))))))) +(skip-if-unsupported) +(test-equal "container-excursion, same namespaces" + 42 + ;; The parent and child are in the same namespaces. 'container-excursion' + ;; should notice that and avoid calling 'setns' since that would fail. + (container-excursion (getpid) + (lambda () + (primitive-exit 42)))) + (test-end) diff --git a/tests/grafts.scm b/tests/grafts.scm index 4eff06b4b3..6454a03b1f 100644 --- a/tests/grafts.scm +++ b/tests/grafts.scm @@ -201,6 +201,54 @@ (and (string=? (readlink one) repl) (string=? (readlink two) one)))))) +(test-assert "graft-derivation, replaced derivation has multiple outputs" + ;; Here we have a replacement just for output "one" of P1 and not for the + ;; other output. Make sure the graft for P1:one correctly applies to the + ;; dependents of P1. See <http://bugs.gnu.org/24712>. + (let* ((p1 (build-expression->derivation + %store "p1" + `(let ((one (assoc-ref %outputs "one")) + (two (assoc-ref %outputs "two"))) + (mkdir one) + (mkdir two)) + #:outputs '("one" "two"))) + (p1r (build-expression->derivation + %store "P1" + `(let ((other (assoc-ref %outputs "ONE"))) + (mkdir other) + (call-with-output-file (string-append other "/replacement") + (const #t))) + #:outputs '("ONE"))) + (p2 (build-expression->derivation + %store "p2" + `(let ((out (assoc-ref %outputs "aaa"))) + (mkdir (assoc-ref %outputs "zzz")) + (mkdir out) (chdir out) + (symlink (assoc-ref %build-inputs "p1:one") "one") + (symlink (assoc-ref %build-inputs "p1:two") "two")) + #:outputs '("aaa" "zzz") + #:inputs `(("p1:one" ,p1 "one") + ("p1:two" ,p1 "two")))) + (p3 (build-expression->derivation + %store "p3" + `(symlink (assoc-ref %build-inputs "p2:aaa") + (assoc-ref %outputs "out")) + #:inputs `(("p2:aaa" ,p2 "aaa") + ("p2:zzz" ,p2 "zzz")))) + (p1g (graft + (origin p1) + (origin-output "one") + (replacement p1r) + (replacement-output "ONE"))) + (p3d (graft-derivation %store p3 (list p1g)))) + (and (build-derivations %store (list p3d)) + (let ((out (derivation->output-path (pk 'p2d p3d)))) + (and (not (string=? (readlink out) + (derivation->output-path p2 "aaa"))) + (string=? (derivation->output-path p1 "two") + (readlink (string-append out "/two"))) + (file-exists? (string-append out "/one/replacement"))))))) + (test-assert "graft-derivation, renaming" ;<http://bugs.gnu.org/23132> (let* ((build `(begin (use-modules (guix build utils)) diff --git a/tests/lint.scm b/tests/lint.scm index d692b42f93..fa2d19b2a6 100644 --- a/tests/lint.scm +++ b/tests/lint.scm @@ -218,6 +218,14 @@ string) on HTTP requests." (check-description-style pkg))) "should not contain trademark sign")))) +(test-assert "description: suggest ornament instead of quotes" + (->bool + (string-contains (with-warnings + (let ((pkg (dummy-package "x" + (description "This is a 'quoted' thing.")))) + (check-description-style pkg))) + "use @code"))) + (test-assert "synopsis: not a string" (->bool (string-contains (with-warnings diff --git a/tests/scripts-build.scm b/tests/scripts-build.scm index e48c8da264..b324012806 100644 --- a/tests/scripts-build.scm +++ b/tests/scripts-build.scm @@ -102,4 +102,23 @@ ((("x" dep)) (eq? dep findutils))))))))))) +(test-assert "options->transformation, with-graft" + (let* ((p (dummy-package "guix.scm" + (inputs `(("foo" ,grep) + ("bar" ,(dummy-package "chbouib" + (native-inputs `(("x" ,grep))))))))) + (t (options->transformation '((with-graft . "grep=findutils"))))) + (with-store store + (let ((new (t store p))) + (and (not (eq? new p)) + (match (package-inputs new) + ((("foo" dep1) ("bar" dep2)) + (and (string=? (package-full-name dep1) + (package-full-name grep)) + (eq? (package-replacement dep1) findutils) + (string=? (package-name dep2) "chbouib") + (match (package-native-inputs dep2) + ((("x" dep)) + (eq? (package-replacement dep) findutils))))))))))) + (test-end) diff --git a/tests/syscalls.scm b/tests/syscalls.scm index 73fa8a7acf..1b31d87f23 100644 --- a/tests/syscalls.scm +++ b/tests/syscalls.scm @@ -148,25 +148,30 @@ (unless perform-container-tests? (test-skip 1)) -(test-assert "pivot-root" +(test-equal "pivot-root" + #t (match (pipe) ((in . out) (match (clone (logior CLONE_NEWUSER CLONE_NEWNS SIGCHLD)) (0 - (close in) - (call-with-temporary-directory - (lambda (root) - (let ((put-old (string-append root "/real-root"))) - (mount "none" root "tmpfs") - (mkdir put-old) - (call-with-output-file (string-append root "/test") - (lambda (port) - (display "testing\n" port))) - (pivot-root root put-old) - ;; The test file should now be located inside the root directory. - (write (file-exists? "/test") out) - (close out)))) - (primitive-exit 0)) + (dynamic-wind + (const #t) + (lambda () + (close in) + (call-with-temporary-directory + (lambda (root) + (let ((put-old (string-append root "/real-root"))) + (mount "none" root "tmpfs") + (mkdir put-old) + (call-with-output-file (string-append root "/test") + (lambda (port) + (display "testing\n" port))) + (pivot-root root put-old) + ;; The test file should now be located inside the root directory. + (write (file-exists? "/test") out) + (close out))))) + (lambda () + (primitive-exit 0)))) (pid (close out) (let ((result (read in))) |