diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 59 |
1 files changed, 28 insertions, 31 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index a77eaead7e..66e06869c4 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -1071,15 +1071,12 @@ package provides command line tools using the Bio++ library.") #:parallel-build? #f ; not supported #:phases (modify-phases %standard-phases - (add-before - 'configure 'set-HOME + (add-before 'configure 'set-HOME ;; $HOME needs to be set at some point during the configure phase (lambda _ (setenv "HOME" "/tmp") #t)) - (add-after - 'unpack 'enter-dir + (add-after 'unpack 'enter-dir (lambda _ (chdir "c++") #t)) - (add-after - 'enter-dir 'fix-build-system + (add-after 'enter-dir 'fix-build-system (lambda _ (define (which* cmd) (cond ((string=? cmd "date") @@ -1127,31 +1124,31 @@ package provides command line tools using the Bio++ library.") (("action=/bin/") "action=") (("export PATH") ":")) #t)) - (replace - 'configure - (lambda* (#:key inputs outputs #:allow-other-keys) - (let ((out (assoc-ref outputs "out")) - (lib (string-append (assoc-ref outputs "lib") "/lib")) - (include (string-append (assoc-ref outputs "include") - "/include/ncbi-tools++"))) - ;; The 'configure' script doesn't recognize things like - ;; '--enable-fast-install'. - (zero? (system* "./configure.orig" - (string-append "--with-build-root=" (getcwd) "/build") - (string-append "--prefix=" out) - (string-append "--libdir=" lib) - (string-append "--includedir=" include) - (string-append "--with-bz2=" - (assoc-ref inputs "bzip2")) - (string-append "--with-z=" - (assoc-ref inputs "zlib")) - (string-append "--with-pcre=" - (assoc-ref inputs "pcre")) - ;; Each library is built twice by default, once - ;; with "-static" in its name, and again - ;; without. - "--without-static" - "--with-dll")))))))) + (replace 'configure + (lambda* (#:key inputs outputs #:allow-other-keys) + (let ((out (assoc-ref outputs "out")) + (lib (string-append (assoc-ref outputs "lib") "/lib")) + (include (string-append (assoc-ref outputs "include") + "/include/ncbi-tools++"))) + ;; The 'configure' script doesn't recognize things like + ;; '--enable-fast-install'. + (invoke "./configure.orig" + (string-append "--with-build-root=" (getcwd) "/build") + (string-append "--prefix=" out) + (string-append "--libdir=" lib) + (string-append "--includedir=" include) + (string-append "--with-bz2=" + (assoc-ref inputs "bzip2")) + (string-append "--with-z=" + (assoc-ref inputs "zlib")) + (string-append "--with-pcre=" + (assoc-ref inputs "pcre")) + ;; Each library is built twice by default, once + ;; with "-static" in its name, and again + ;; without. + "--without-static" + "--with-dll") + #t)))))) (outputs '("out" ; 21 MB "lib" ; 226 MB "include")) ; 33 MB |