diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 30 |
1 files changed, 28 insertions, 2 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 3890bbc653..1c42e503f2 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -6889,6 +6889,32 @@ sequences.") ;; STAR is licensed under GPLv3 or later; htslib is MIT-licensed. (license license:gpl3+))) +(define-public star-for-pigx + (package + (inherit star) + (name "star") + (version "2.7.3a") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/alexdobin/STAR") + (commit version))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1hgiqw5qhs0pc1xazzihcfd92na02xyq2kb469z04y1v51kpvvjq")) + (modules '((guix build utils))) + (snippet + '(begin + (substitute* "source/Makefile" + (("/bin/rm") "rm")) + ;; Remove pre-built binaries and bundled htslib sources. + (delete-file-recursively "bin/MacOSX_x86_64") + (delete-file-recursively "bin/Linux_x86_64") + (delete-file-recursively "bin/Linux_x86_64_static") + (delete-file-recursively "source/htslib") + #t)))))) + (define-public starlong (package (inherit star) (name "starlong") @@ -12587,7 +12613,7 @@ once. This package provides tools to perform Drop-seq analyses.") ("snakemake" ,snakemake) ("fastqc" ,fastqc) ("multiqc" ,multiqc) - ("star" ,star) + ("star" ,star-for-pigx) ("trim-galore" ,trim-galore) ("htseq" ,htseq) ("samtools" ,samtools) @@ -12798,7 +12824,7 @@ methylation and segmentation.") ("pandoc-citeproc" ,pandoc-citeproc) ("samtools" ,samtools) ("snakemake" ,snakemake) - ("star" ,star) + ("star" ,star-for-pigx) ("r-minimal" ,r-minimal) ("r-argparser" ,r-argparser) ("r-cowplot" ,r-cowplot) |