diff options
| -rw-r--r-- | gnu/local.mk | 1 | ||||
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 9 | ||||
| -rw-r--r-- | gnu/packages/patches/multiqc-fix-git-subprocess-error.patch | 16 |
3 files changed, 24 insertions, 2 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 38c1b0b94e..b7c182fbf6 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -730,6 +730,7 @@ dist_patch_DATA = \ %D%/packages/patches/mpc123-initialize-ao.patch \ %D%/packages/patches/mplayer2-theora-fix.patch \ %D%/packages/patches/module-init-tools-moduledir.patch \ + %D%/packages/patches/multiqc-fix-git-subprocess-error.patch \ %D%/packages/patches/mumps-build-parallelism.patch \ %D%/packages/patches/mupdf-build-with-openjpeg-2.1.patch \ %D%/packages/patches/mupen64plus-ui-console-notice.patch \ diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 07c4a0a1b7..54c8ce0f63 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7855,15 +7855,20 @@ replacement for strverscmp.") (define-public multiqc (package (name "multiqc") - (version "0.6") + (version "0.9") (source (origin (method url-fetch) (uri (pypi-uri "multiqc" version)) (sha256 (base32 - "0avw11h63ldpxy5pizc3wl1wa01ha7q10wb240nggsjz3jaqvyiy")))) + "12gs1jw2jrxrij529rnl5kaqxfcqn15yzcsggxkfhdx634ml0cny")) + (patches (search-patches "multiqc-fix-git-subprocess-error.patch")))) (build-system python-build-system) + (arguments + ;; Tests are to be introduced in the next version, see + ;; https://github.com/ewels/MultiQC/issues/376 + `(#:tests? #f)) (propagated-inputs `(("python-jinja2" ,python-jinja2) ("python-simplejson" ,python-simplejson) diff --git a/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch b/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch new file mode 100644 index 0000000000..87be6142f4 --- /dev/null +++ b/gnu/packages/patches/multiqc-fix-git-subprocess-error.patch @@ -0,0 +1,16 @@ +Without this patch, the incorrect exception is caught when 'git' is not in +PATH. See https://github.com/ewels/MultiQC/pull/377. + +diff --git a/multiqc/utils/config.py b/multiqc/utils/config.py +index 01fa554..4a11793 100755 +--- a/multiqc/utils/config.py ++++ b/multiqc/utils/config.py +@@ -28,7 +28,7 @@ try: + git_hash = subprocess.check_output(['git', 'rev-parse', 'HEAD'], stderr=subprocess.STDOUT) + git_hash_short = git_hash[:7] + version = '{} ({})'.format(version, git_hash_short) +-except subprocess.CalledProcessError: ++except (subprocess.CalledProcessError, FileNotFoundError): + pass + os.chdir(cwd) + |