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| -rw-r--r-- | gnu/packages/maths.scm | 148 |
1 files changed, 148 insertions, 0 deletions
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm index 628b967eff..ee8f7612ba 100644 --- a/gnu/packages/maths.scm +++ b/gnu/packages/maths.scm @@ -1799,6 +1799,154 @@ large-scale nonlinear optimization. It provides C++, C, and Fortran interfaces.") (license license:epl2.0))) +(define-public nomad-optimizer + (package + (name "nomad-optimizer") + (version "4.1.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/bbopt/nomad/") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0w386d8r5ldbvnv0c0g7vz95pfpvwdxis26vaalk2amsa5akl775")))) + (build-system cmake-build-system) + (native-inputs + `(("python" ,python-wrapper) + ("python-cython" ,python-cython))) + (arguments + `(#:imported-modules ((guix build python-build-system) + ,@%cmake-build-system-modules) + #:modules (((guix build python-build-system) + #:select (python-version site-packages)) + (guix build cmake-build-system) + (guix build utils)) + #:configure-flags + '("-DBUILD_INTERFACES=ON" + "-DBUILD_TESTS=ON") + #:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-sources-for-build + (lambda* (#:key outputs #:allow-other-keys) + (substitute* "CMakeLists.txt" + ;; CMAKE_INSTALL_PREFIX is accidentally hardcoded. + (("set\\(CMAKE_INSTALL_PREFIX .* FORCE\\)") "") + ;; Requiring GCC version 8 or later is unwarranted. + (("message\\(FATAL_ERROR \"GCC version < 8") + "message(STATUS \"GCC version < 8")) + + (let ((out (assoc-ref outputs "out"))) + (substitute* "interfaces/PyNomad/CMakeLists.txt" + ;; We don't want to build in-place, and anyway the install + ;; command further below runs build_ext as a prerequisite. + (("COMMAND python setup_PyNomad\\.py .* build_ext --inplace\n") + "") + ;; Don't install locally. + (("COMMAND python (setup_PyNomad\\.py .* install) --user\n" + _ args) + (string-append "COMMAND ${CMAKE_COMMAND} -E env" + " CC=" ,(cc-for-target) + " CXX=" ,(cxx-for-target) + " " (which "python") + " " args + " --prefix=" out + "\n"))) + ;; Fix erroneous assumptions about the paths of the include and + ;; library directories. + (substitute* "interfaces/PyNomad/setup_PyNomad.py" + (("^( +os_include_dirs = ).*" _ prefix) + (string-append prefix "[\"../../src\"]\n")) + (("^(installed_lib_dir = ).*" _ prefix) + (string-append prefix "\"" out "/lib\"\n")))) + #t)) + + ;; Fix the tests so they run in out-of-source builds. + (add-after 'fix-sources-for-build 'fix-sources-for-tests + (lambda _ + (substitute* + (map (lambda (d) (string-append "examples/" d "/CMakeLists.txt")) + (append + (map (lambda (d) (string-append "basic/library/" d)) + '("example1" "example2" "example3" + "single_obj_parallel")) + (map (lambda (d) (string-append "advanced/library/" d)) + '("FixedVariable" "NMonly" "PSDMads" "Restart" + "c_api/example1" "c_api/example2" + "exampleSuggestAndObserve")))) + ;; The built examples are assumed to be in the source tree + ;; (which isn't the case here). + (("(COMMAND \\$\\{CMAKE_BINARY_DIR\\}/examples/runExampleTest\\.sh )\\.(/.*)" + _ command test) + (string-append command "${CMAKE_CURRENT_BINARY_DIR}" test))) + ;; (Unrelated to support for out-of-source testing.) + (make-file-writable + "examples/advanced/library/exampleSuggestAndObserve/cache0.txt") + + (let* ((builddir (string-append (getcwd) "/../build")) + ;; The BB_EXE and SURROGATE_EXE paths are interpreted + ;; relative to the configuration file provided to NOMAD. + ;; However, the configuration files are all in the source + ;; tree rather than in the build tree (unlike the compiled + ;; executables). + (fix-exe-path (lambda* (dir #:optional + (file "param.txt") + (exe-opt "BB_EXE")) + (substitute* (string-append dir "/" file) + (((string-append "^" exe-opt " +")) + ;; The $ prevents NOMAD from prefixing + ;; the executable with the path of the + ;; parent directory of the configuration + ;; file NOMAD was provided with as + ;; argument (param.txt or some such). + (string-append exe-opt " $" + builddir "/" dir "/")))))) + (for-each + (lambda (dir) + (let ((dir (string-append "examples/" dir))) + (substitute* (string-append dir "/CMakeLists.txt") + ;; The install phase has not yet run. + (("COMMAND \\$\\{CMAKE_INSTALL_PREFIX\\}/bin/nomad ") + "COMMAND ${CMAKE_BINARY_DIR}/src/nomad ")) + (fix-exe-path dir) + (when (equal? dir "examples/basic/batch/surrogate_sort") + (fix-exe-path dir "param.txt" "SURROGATE_EXE")))) + (append (map (lambda (d) (string-append "basic/batch/" d)) + '("example1" "example2" + "single_obj" "single_obj_parallel" + "surrogate_sort")) + '("advanced/batch/LHonly"))) + + (let ((dir "examples/advanced/batch/FixedVariable")) + (substitute* (string-append dir "/runFixed.sh") + ;; Hardcoded path to NOMAD executable. + (("^\\.\\./\\.\\./\\.\\./\\.\\./bin/nomad ") + (string-append builddir "/src/nomad "))) + (for-each + (lambda (f) (fix-exe-path dir f)) + '("param1.txt" "param2.txt" "param3.txt" "param10.txt")))) + #t)) + + ;; The information in the .egg-info file is not kept up to date. + (add-after 'install 'delete-superfluous-egg-info + (lambda* (#:key inputs outputs #:allow-other-keys) + (delete-file (string-append + (site-packages inputs outputs) + "PyNomad-0.0.0-py" + (python-version (assoc-ref inputs "python")) + ".egg-info")) + #t))))) + (home-page "https://www.gerad.ca/nomad/") + (synopsis "Nonlinear optimization by mesh-adaptive direct search") + (description + "NOMAD is a C++ implementation of the mesh-adaptive direct search (MADS) +algorithm, designed for difficult blackbox optimization problems. These +problems occur when the functions defining the objective and constraints are +the result of costly computer simulations.") + (license license:lgpl3+))) + (define-public cbc (package (name "cbc") |