diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 46 |
1 files changed, 35 insertions, 11 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 91a3c1f185..742b02cb5b 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -3635,7 +3635,7 @@ results. The FASTX-Toolkit tools perform some of these preprocessing tasks.") ("zlib" ,zlib))) (native-inputs `(("pkg-config" ,pkg-config) - ("seqan" ,seqan))) + ("seqan" ,seqan-2))) (home-page "https://github.com/seqan/flexbar") (synopsis "Barcode and adapter removal tool for sequencing platforms") (description @@ -6787,6 +6787,39 @@ writing files into the .sra format.") (define-public seqan (package (name "seqan") + (version "3.0.3") + (source (origin + (method url-fetch) + (uri (string-append "https://github.com/seqan/seqan3/releases/" + "download/" version "/seqan3-" + version "-Source.tar.xz")) + (sha256 + (base32 + "1h2z0cvgidhkmh5xsbw75waqbrqbbv6kkrvb0b92xfh3gqpaiz22")))) + (build-system cmake-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (replace 'check + (lambda _ + (invoke "ctest" "test" "--output-on-failure")))))) + (native-inputs + `(("bzip2" ,bzip2) + ("cereal" ,cereal) + ("zlib" ,zlib))) + (home-page "https://www.seqan.de") + (synopsis "Library for nucleotide sequence analysis") + (description + "SeqAn is a C++ library of efficient algorithms and data structures for +the analysis of sequences with the focus on biological data. It contains +algorithms and data structures for string representation and their +manipulation, online and indexed string search, efficient I/O of +bioinformatics file formats, sequence alignment, and more.") + (license license:bsd-3))) + +(define-public seqan-2 + (package + (inherit seqan) (version "2.4.0") (source (origin (method url-fetch) @@ -6818,16 +6851,7 @@ writing files into the .sra format.") (native-inputs `(("source" ,source) ("tar" ,tar) - ("xz" ,xz))) - (home-page "https://www.seqan.de") - (synopsis "Library for nucleotide sequence analysis") - (description - "SeqAn is a C++ library of efficient algorithms and data structures for -the analysis of sequences with the focus on biological data. It contains -algorithms and data structures for string representation and their -manipulation, online and indexed string search, efficient I/O of -bioinformatics file formats, sequence alignment, and more.") - (license license:bsd-3))) + ("xz" ,xz))))) (define-public seqan-1 (package (inherit seqan) |