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| -rw-r--r-- | gnu/packages/bioconductor.scm | 52 |
1 files changed, 51 insertions, 1 deletions
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm index a4d97fad65..9e426df99e 100644 --- a/gnu/packages/bioconductor.scm +++ b/gnu/packages/bioconductor.scm @@ -4,7 +4,7 @@ ;;; Copyright © 2017, 2018, 2019 Tobias Geerinckx-Rice <me@tobias.gr> ;;; Copyright © 2019, 2020 Simon Tournier <zimon.toutoune@gmail.com> ;;; Copyright © 2020 Peter Lo <peterloleungyau@gmail.com> -;;; Copyright © 2020 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> +;;; Copyright © 2020, 2021 Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> ;;; Copyright © 2020 Jakub Kądziołka <kuba@kadziolka.net> ;;; ;;; This file is part of GNU Guix. @@ -7435,6 +7435,56 @@ data. This modified test allows for testing differential expression in qPCR data.") (license license:gpl2+))) +(define-public r-universalmotif + (package + (name "r-universalmotif") + (version "1.8.3") + (source + (origin + (method url-fetch) + (uri (bioconductor-uri "universalmotif" version)) + (sha256 + (base32 + "1ys2kbayc1rzv8nzi60208yfslm4kzynndfg7vw2n0c30dvzycrc")))) + (properties + `((upstream-name . "universalmotif"))) + (build-system r-build-system) + (arguments + `(#:phases + (modify-phases %standard-phases + (add-after 'unpack 'fix-reference-to-strip + (lambda _ + (substitute* "src/Makevars" + (("/usr/bin/strip") (which "strip")))))))) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-ggplot2" ,r-ggplot2) + ("r-ggseqlogo" ,r-ggseqlogo) + ("r-iranges" ,r-iranges) + ("r-mass" ,r-mass) + ("r-rcpp" ,r-rcpp) + ("r-rcppthread" ,r-rcppthread) + ("r-rdpack" ,r-rdpack) + ("r-rlang" ,r-rlang) + ("r-s4vectors" ,r-s4vectors) + ("r-yaml" ,r-yaml))) + (native-inputs + `(("r-knitr" ,r-knitr))) + (home-page + "https://bioconductor.org/packages/universalmotif/") + (synopsis + "Specific structures importer, modifier, and exporter for R") + (description + "This package allows importing most common @dfn{specific structure} +(motif) types into R for use by functions provided by other Bioconductor +motif-related packages. Motifs can be exported into most major motif formats +from various classes as defined by other Bioconductor packages. A suite of +motif and sequence manipulation and analysis functions are included, including +enrichment, comparison, P-value calculation, shuffling, trimming, higher-order +motifs, and others.") + (license license:gpl3))) + ;; This is a CRAN package, but it depends on Bioconductor packages, so we put ;; it here. (define-public r-activedriverwgs |