diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 49 |
1 files changed, 49 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index f3e0e41e4d..4e7e49fecf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -7203,6 +7203,55 @@ clustering analysis, differential analysis, motif inference and exploration of single cell ATAC-seq sequencing data.") (license license:gpl3))) +(define-public r-archr + (let ((commit "46b519ffb6f73edf132497ac31650d19ef055dc1") + (revision "1")) + (package + (name "r-archr") + (version (git-version "1.0.0" revision commit)) + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/GreenleafLab/ArchR") + (commit commit))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "1zj3sdfhgn2q2256fmz61a92vw1wylyck632d7842d6knd0v92v8")))) + (properties `((upstream-name . "ArchR"))) + (build-system r-build-system) + (propagated-inputs + `(("r-biocgenerics" ,r-biocgenerics) + ("r-biostrings" ,r-biostrings) + ("r-chromvar" ,r-chromvar) + ("r-complexheatmap" ,r-complexheatmap) + ("r-data-table" ,r-data-table) + ("r-genomicranges" ,r-genomicranges) + ("r-ggplot2" ,r-ggplot2) + ("r-ggrepel" ,r-ggrepel) + ("r-gridextra" ,r-gridextra) + ("r-gtable" ,r-gtable) + ("r-gtools" ,r-gtools) + ("r-magrittr" ,r-magrittr) + ("r-matrix" ,r-matrix) + ("r-matrixstats" ,r-matrixstats) + ("r-motifmatchr" ,r-motifmatchr) + ("r-nabor" ,r-nabor) + ("r-plyr" ,r-plyr) + ("r-rcpp" ,r-rcpp) + ("r-rhdf5" ,r-rhdf5) + ("r-rsamtools" ,r-rsamtools) + ("r-s4vectors" ,r-s4vectors) + ("r-stringr" ,r-stringr) + ("r-summarizedexperiment" ,r-summarizedexperiment) + ("r-uwot" ,r-uwot))) + (home-page "https://github.com/GreenleafLab/ArchR") + (synopsis "Analyze single-cell regulatory chromatin in R") + (description + "This package is designed to streamline scATAC analyses in R.") + (license license:gpl2+)))) + (define-public r-scde (package (name "r-scde") |