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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bb15672d51..089804eaa9 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14755,3 +14755,34 @@ ATAC-seq results. It was written to make it easier to spot differences that might be caused by ATAC-seq library prep or sequencing. The main program, @code{ataqv}, examines aligned reads and reports some basic metrics.") (license license:gpl3+))) + +(define-public r-psiplot + (package + (name "r-psiplot") + (version "2.3.0") + (source + (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/kcha/psiplot.git") + (commit (string-append "v" version)))) + (file-name (git-file-name name version)) + (sha256 + (base32 "08438h16cfry5kqh3y9hs8q1b1a8bxhblsm75knviz5r6q0n1jxh")))) + (build-system r-build-system) + (propagated-inputs + `(("r-mass" ,r-mass) + ("r-dplyr" ,r-dplyr) + ("r-tidyr" ,r-tidyr) + ("r-purrr" ,r-purrr) + ("r-readr" ,r-readr) + ("r-magrittr" ,r-magrittr) + ("r-ggplot2" ,r-ggplot2))) + (home-page "https://github.com/kcha/psiplot") + (synopsis "Plot percent spliced-in values of alternatively-spliced exons") + (description + "PSIplot is an R package for generating plots of @dfn{percent +spliced-in} (PSI) values of alternatively-spliced exons that were computed by +vast-tools, an RNA-Seq pipeline for alternative splicing analysis. The plots +are generated using @code{ggplot2}.") + (license license:expat))) |