diff options
| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index d9ff16e91e..e418b2cefd 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -14560,3 +14560,36 @@ quantifying single-cell chromatin data, computing per-cell quality control metrics, dimension reduction and normalization, visualization, and DNA sequence motif analysis.") (license license:expat)))) + +(define-public tombo + (package + (name "tombo") + (version "1.5.1") + (source + (origin + (method url-fetch) + (uri (pypi-uri "ont-tombo" version)) + (sha256 + (base32 + "1023hadgcsgi53kz53ql45207hfizf9sw57z0qij3ay1bx68zbpm")))) + (build-system python-build-system) + (native-inputs + `(("python-cython" ,python-cython) + ("python-nose2" ,python-nose2))) + ;; The package mainly consists of a command-line tool, but also has a + ;; Python-API. Thus these must be propagated. + (propagated-inputs + `(("python-future" ,python-future) + ("python-h5py" ,python-h5py) + ("python-mappy" ,python-mappy) + ("python-numpy" ,python-numpy) + ("python-scipy" ,python-scipy) + ("python-tqdm" ,python-tqdm) + ("python-rpy2" ,python-rpy2))) + (home-page "https://github.com/nanoporetech/tombo") + (synopsis "Analysis of raw nanopore sequencing data") + (description "Tombo is a suite of tools primarily for the identification of +modified nucleotides from nanopore sequencing data. Tombo also provides tools +for the analysis and visualization of raw nanopore signal.") + ;; Some parts may be BSD-3-licensed. + (license license:mpl2.0))) |