diff options
| -rw-r--r-- | gnu/local.mk | 2 | ||||
| -rw-r--r-- | gnu/packages/julia.scm | 333 | ||||
| -rw-r--r-- | gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch | 28 |
3 files changed, 184 insertions, 179 deletions
diff --git a/gnu/local.mk b/gnu/local.mk index 77f9de2440..d305a5eab9 100644 --- a/gnu/local.mk +++ b/gnu/local.mk @@ -29,6 +29,7 @@ # Copyright © 2020 Brendan Tildesley <mail@brendan.scot> # Copyright © 2020 Vincent Legoll <vincent.legoll@gmail.com> # Copyright © 2020 R Veera Kumar <vkor@vkten.in> +# Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz # # This file is part of GNU Guix. # @@ -1065,6 +1066,7 @@ dist_patch_DATA = \ %D%/packages/patches/jfsutils-add-sysmacros.patch \ %D%/packages/patches/jfsutils-include-systypes.patch \ %D%/packages/patches/jsoncpp-fix-inverted-case.patch \ + %D%/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch \ %D%/packages/patches/kdbusaddons-kinit-file-name.patch \ %D%/packages/patches/libnftnl-dont-check-NFTNL_FLOWTABLE_SIZE.patch \ %D%/packages/patches/libvirt-create-machine-cgroup.patch \ diff --git a/gnu/packages/julia.scm b/gnu/packages/julia.scm index 146c1e5a91..6dd53b9283 100644 --- a/gnu/packages/julia.scm +++ b/gnu/packages/julia.scm @@ -1,6 +1,7 @@ ;;; GNU Guix --- Functional package management for GNU ;;; Copyright © 2015, 2016, 2017 Ricardo Wurmus <rekado@elephly.net> -;;; Copyright © 2016 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2016, 2020 Efraim Flashner <efraim@flashner.co.il> +;;; Copyright © 2020 Nicolò Balzarotti <nicolo@nixo.xyz> ;;; ;;; This file is part of GNU Guix. ;;; @@ -28,6 +29,7 @@ #:use-module (gnu packages algebra) #:use-module (gnu packages base) #:use-module (gnu packages compression) + #:use-module (gnu packages curl) #:use-module (gnu packages elf) #:use-module (gnu packages gcc) #:use-module (gnu packages llvm) @@ -41,20 +43,21 @@ #:use-module (gnu packages python) #:use-module (gnu packages python-xyz) #:use-module (gnu packages textutils) + #:use-module (gnu packages ssh) #:use-module (gnu packages tls) #:use-module (gnu packages version-control) #:use-module (gnu packages wget) #:use-module (ice-9 match)) (define libuv-julia - (let ((commit "26dbe5672c33fc885462c509fe2a9b36f35866fd") - (revision "6")) - ;; When upgrading Julia, also upgrade this. - ;; Get the commit from https://github.com/JuliaLang/julia/blob/v1.1.1/deps/libuv.version + (let ((commit "35b1504507a7a4168caae3d78db54d1121b121e1") + (revision "1")) + ;; When upgrading Julia, also upgrade this. Get the commit from + ;; https://github.com/JuliaLang/julia/blob/v1.3.1/deps/libuv.version (package (inherit libuv) (name "libuv-julia") - (version (string-append "1.9.0-" revision "." (string-take commit 8))) + (version (git-version "2.0.0" revision commit)) (source (origin (method git-fetch) (uri (git-reference @@ -63,7 +66,7 @@ (file-name (string-append name "-" version "-checkout")) (sha256 (base32 - "17pn2xmqaramilx897s9grs966i5246gi6sric5alch4g9j4685n")))) + "0dn3v6fdp1z382pqg3nhjzk60l61ky9b65mfgaj29fv2da95rwjs")))) (build-system gnu-build-system) (arguments (substitute-keyword-arguments (package-arguments libuv) @@ -72,14 +75,37 @@ (delete 'autogen))))) (home-page "https://github.com/JuliaLang/libuv")))) -(define (llvm-patch-url version name) +(define libunwind-julia + ;; The Julia projects requires their patched version. + ;; Get from https://github.com/JuliaLang/julia/tree/master/deps/patches + (package + (inherit libunwind) + (name "libunwind-julia") + (version "1.3.1") + (source + (origin + (method url-fetch) + (uri (string-append "mirror://savannah/libunwind/libunwind-" + version ".tar.gz")) + (sha256 + (base32 + "1y0l08k6ak1mqbfj6accf9s5686kljwgsl4vcqpxzk5n74wpm6a3")) + (patches + (list + (julia-patch "libunwind-prefer-extbl" + "0lr4dafw8qyfh8sw8hhbwkql1dlhqv8px7k81y2l20hhxfgnh2m1") + (julia-patch "libunwind-static-arm" + "1jk3bmiw61ypcchqkk1fyg5wh8wpggk574wxyfyaic870zh3lhgq"))))) + (home-page "https://github.com/JuliaLang/tree/master/deps/"))) + +(define (julia-patch-url version name) (string-append "https://raw.githubusercontent.com/JuliaLang/julia/v" version "/deps/patches/" name)) -(define (llvm-patch name sha) - (let ((version "1.1.1")) +(define (julia-patch name sha) + (let ((version "1.3.1")) (origin (method url-fetch) - (uri (llvm-patch-url version name)) + (uri (julia-patch-url version name)) (sha256 (base32 sha)) (file-name name)))) @@ -88,51 +114,50 @@ (inherit llvm-6) (name "llvm-julia") (source (origin - (method url-fetch) - (uri "http://releases.llvm.org/6.0.1/llvm-6.0.1.src.tar.xz") - (sha256 - (base32 - "1qpls3vk85lydi5b4axl0809fv932qgsqgdgrk098567z4jc7mmn")) + (inherit (package-source llvm-6)) ;; Those patches are inside the Julia source repo. ;; They are _not_ Julia specific (https://github.com/julialang/julia#llvm) ;; but they are required to build Julia. ;; Discussion: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=919628 (patches - (list - (llvm-patch "llvm-6.0-D44650.patch" - "1336q4vqayr94wdcnlmcxh90mjdh34dzw9x2cbiqjnx9b1j8fxyb") - (llvm-patch "llvm-6.0-DISABLE_ABI_CHECKS.patch" - "014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg") - (llvm-patch "llvm-6.0-NVPTX-addrspaces.patch" - "1qdi2zmrjsrj0h84zv2vyly2hjcn4f67mfy0s1q353g4v4jkscqc") - (llvm-patch "llvm-6.0.0_D27296-libssp.patch" - "0s5hi2r1j63i8m6ig1346crx2aiv9f7rgb3mg80kw1wx5y7pdpfh") - (llvm-patch "llvm-D27629-AArch64-large_model_6.0.1.patch" - "1qrshmlqvnasdyc158vfn3hnbigqph3lsq7acb9w8lwkpnnm2j4z") - (llvm-patch "llvm-D34078-vectorize-fdiv.patch" - "1696hg84a0jxcnggvqsc2cdp271hf9a44p4qsd078qm1mfawkaay") - (llvm-patch "llvm-D42262-jumpthreading-not-i1.patch" - "1c8w210gwidbnkkw8anp17dk5pnxws2fl3mb2qxh7y9wzfpixgaq") - (llvm-patch "llvm-D44892-Perf-integration.patch" - "0r37jd0ssh2k1pndkfd5blgpg9z90im4vlzprhb0n0wwz45g4b05") - (llvm-patch "llvm-D46460.patch" - "1miqgswdc0qvbaf4571c2xkxyp9ais06b1bcpa83sq22vr4hbsfb") - (llvm-patch "llvm-D49832-SCEVPred.patch" - "0v5c88hgqj6dymv3j86ca5mhpqab5fbnrvjiw1nvnrnya9l4dlbn") - (llvm-patch "llvm-D50010-VNCoercion-ni.patch" - "0iblb3q1xixwrb12jpb89h3ywmqmzdp6aqp416j4ncwakyjhhfkp") - (llvm-patch "llvm-D50167-scev-umin.patch" - "1f2rakcnnyhr7w10k7gqg0k0491pyvx5ijplivw557f714ys3q6v") - (llvm-patch "llvm-OProfile-line-num.patch" - "1jvbbmwyags0xfwamb13qrf3rgcz9i1r03m9lava7swag8xb78c7") - (llvm-patch "llvm-PPC-addrspaces.patch" - "1f23nhsxh2s3jskbgs7da9nwg3s1hrkbk5aahl08x41wi3mny01p") - (llvm-patch "llvm-rL323946-LSRTy.patch" - "10cz3vy1yw0w643z7xx021wa4kymx9fcm3bjg61s6vzdqd6d9fns") - (llvm-patch "llvm-rL326967-aligned-load.patch" - "04jxnv32yj5x17hqhi8g2p8rhgp38gmjzr871w7z8s44pq10v9v4") - (llvm-patch "llvm-rL327898.patch" - "15ah49gbsll23z28kpyahi5vl0fh3fkxcgd1zmxxdcl96s3x8bnq"))))) + (map (match-lambda + ((name hash) + (julia-patch name hash))) + (list + '("llvm-6.0-D44650" + "1336q4vqayr94wdcnlmcxh90mjdh34dzw9x2cbiqjnx9b1j8fxyb") + '("llvm-6.0-DISABLE_ABI_CHECKS" + "014fawd1ba7yckalypfld22zgic87x9nx3cim42zrwygywd36pyg") + '("llvm-6.0-NVPTX-addrspaces" + "1qdi2zmrjsrj0h84zv2vyly2hjcn4f67mfy0s1q353g4v4jkscqc") + '("llvm-6.0.0_D27296-libssp" + "0s5hi2r1j63i8m6ig1346crx2aiv9f7rgb3mg80kw1wx5y7pdpfh") + '("llvm-D27629-AArch64-large_model_6.0.1" + "1qrshmlqvnasdyc158vfn3hnbigqph3lsq7acb9w8lwkpnnm2j4z") + '("llvm-D34078-vectorize-fdiv" + "1696hg84a0jxcnggvqsc2cdp271hf9a44p4qsd078qm1mfawkaay") + '("llvm-D42262-jumpthreading-not-i1" + "1c8w210gwidbnkkw8anp17dk5pnxws2fl3mb2qxh7y9wzfpixgaq") + '("llvm-D44892-Perf-integration" + "0r37jd0ssh2k1pndkfd5blgpg9z90im4vlzprhb0n0wwz45g4b05") + '("llvm-D46460" + "1miqgswdc0qvbaf4571c2xkxyp9ais06b1bcpa83sq22vr4hbsfb") + '("llvm-D49832-SCEVPred" + "0v5c88hgqj6dymv3j86ca5mhpqab5fbnrvjiw1nvnrnya9l4dlbn") + '("llvm-D50010-VNCoercion-ni" + "0iblb3q1xixwrb12jpb89h3ywmqmzdp6aqp416j4ncwakyjhhfkp") + '("llvm-D50167-scev-umin" + "1f2rakcnnyhr7w10k7gqg0k0491pyvx5ijplivw557f714ys3q6v") + '("llvm-OProfile-line-num" + "1jvbbmwyags0xfwamb13qrf3rgcz9i1r03m9lava7swag8xb78c7") + '("llvm-PPC-addrspaces" + "1f23nhsxh2s3jskbgs7da9nwg3s1hrkbk5aahl08x41wi3mny01p") + '("llvm-rL323946-LSRTy" + "10cz3vy1yw0w643z7xx021wa4kymx9fcm3bjg61s6vzdqd6d9fns") + '("llvm-rL326967-aligned-load" + "04jxnv32yj5x17hqhi8g2p8rhgp38gmjzr871w7z8s44pq10v9v4") + '("llvm-rL327898" + "15ah49gbsll23z28kpyahi5vl0fh3fkxcgd1zmxxdcl96s3x8bnq")))))) (arguments (substitute-keyword-arguments (package-arguments llvm-6) ((#:configure-flags flags) @@ -158,7 +183,7 @@ (define-public julia (package (name "julia") - (version "1.1.1") + (version "1.3.1") (source (origin (method url-fetch) (uri (string-append @@ -166,7 +191,9 @@ version "/julia-" version ".tar.gz")) (sha256 (base32 - "0hk983mywimclgnjc41zmlppm5kfdz2aj85ky07p49ilcqxi998f")))) + "1nwkmr9j55g1zkxdchnid1h022s0is52vx23niksshgvh793g41x")) + (patches + (search-patches "julia-SOURCE_DATE_EPOCH-mtime.patch")))) (build-system gnu-build-system) (arguments `(#:test-target "test" @@ -188,30 +215,25 @@ (add-after 'unpack 'prepare-deps (lambda* (#:key inputs #:allow-other-keys) (mkdir "deps/srccache") - (copy-file (assoc-ref inputs "dsfmt") - "deps/srccache/dsfmt-2.2.3.tar.gz") + ;; no USE_SYSTEM_{OBJCONV/LIBWHICH} option (copy-file (assoc-ref inputs "objconv") "deps/srccache/objconv.zip") - (copy-file (assoc-ref inputs "suitesparse") - "deps/srccache/SuiteSparse-4.4.5.tar.gz") - (copy-file (string-append (assoc-ref inputs "virtualenv") - "/bin/virtualenv") - "julia-env") (copy-file (assoc-ref inputs "libwhich") (string-append "deps/srccache/libwhich-" "81e9723c0273d78493dc8c8ed570f68d9ce7e89e" ".tar.gz")) - (copy-file (assoc-ref inputs "rmath") - "deps/srccache/Rmath-julia-0.1.tar.gz") ;; needed by libwhich (setenv "LD_LIBRARY_PATH" (string-join (map (lambda (pkg) (string-append (assoc-ref inputs pkg) "/lib")) - '("arpack-ng" "fftw" "gmp" "lapack" - "libgit2" "mpfr" "openblas" "openlibm" - "openspecfun" "pcre2")) + '("arpack-ng" "curl" "dsfmt" + "gmp" "lapack" + "libssh2" "libgit2" + "mbedtls" "mpfr" + "openblas" "openlibm" "pcre2" + "suitesparse")) ":")) #t)) ;; FIXME: Building the documentation requires Julia packages that @@ -233,42 +255,11 @@ ;; using the output of "/sbin/ldconfig -p". Since ldconfig is not ;; used in Guix, we patch runtime_ccall.cpp to contain a static map. (lambda* (#:key inputs #:allow-other-keys) - (use-modules (ice-9 match)) - (substitute* "src/runtime_ccall.cpp" - ;; Patch out invocations of '/sbin/ldconfig' to avoid getting - ;; error messages about missing '/sbin/ldconfig' on Guix System. - (("popen\\(.*ldconfig.*\\);") - "NULL;\n") - - ;; Populate 'sonameMap'. - (("jl_read_sonames.*;") - (string-join - (map (match-lambda - ((input libname soname) - (string-append - "sonameMap[\"" libname "\"] = " - "\"" (assoc-ref inputs input) "/lib/" soname "\";"))) - '(("libc" "libc" "libc.so.6") - ("pcre2" "libpcre2-8" "libpcre2-8.so") - ("mpfr" "libmpfr" "libmpfr.so") - ("openblas" "libblas" "libopenblas.so") - ("arpack-ng" "libarpack" "libarpack.so") - ("lapack" "liblapack" "liblapack.so") - ("libgit2" "libgit2" "libgit2.so") - ("gmp" "libgmp" "libgmp.so") - ("openspecfun" "libopenspecfun" "libopenspecfun.so") - ("fftw" "libfftw3" "libfftw3_threads.so") - ("fftwf" "libfftw3f" "libfftw3f_threads.so")))))) (substitute* "base/math.jl" (("const libm = Base.libm_name") (string-append "const libm = \"" (assoc-ref inputs "openlibm") "/lib/libopenlibm.so" - "\"")) - (("const openspecfun = \"libopenspecfun\"") - (string-append "const openspecfun = \"" - (assoc-ref inputs "openspecfun") - "/lib/libopenspecfun.so" "\""))) #t)) (add-before 'build 'fix-include-and-link-paths @@ -278,10 +269,10 @@ ;; collection of build targets and a list of libraries to link ;; against. (substitute* "src/flisp/Makefile" - (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)") - "$(BUILDDIR)/$(EXENAME): $(OBJS) $(LLT_release)") - (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug: \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)") - "$(BUILDDIR)/$(EXENAME)-debug: $(DOBJS) $(LLT_debug)")) + (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)\\$\\(EXE\\): \\$\\(OBJS\\) \\$\\(LIBFILES_release\\)") + "$(BUILDDIR)/$(EXENAME)$(EXE): $(OBJS) $(LLT_release)") + (("\\$\\(BUILDDIR\\)/\\$\\(EXENAME\\)-debug$(EXE): \\$\\(DOBJS\\) \\$\\(LIBFILES_debug\\)") + "$(BUILDDIR)/$(EXENAME)-debug\\$\\(EXE\\): $(DOBJS) $(LLT_debug)")) ;; The REPL must be linked with libuv. (substitute* "ui/Makefile" @@ -300,35 +291,46 @@ (substitute* "base/client.jl" (("/bin/sh") (which "sh"))) #t)) - (add-after 'unpack 'hardcode-paths + (add-before 'build 'fix-precompile (lambda _ - (substitute* "stdlib/InteractiveUtils/src/InteractiveUtils.jl" - (("`which") (string-append "`" (which "which"))) - (("`wget") (string-append "`" (which "wget")))) + (substitute* "base/loading.jl" + (("something(Base.active_project(), \"\")") "\"\"")) #t)) (add-before 'check 'disable-broken-tests (lambda _ - (define (touch file-name) - (call-with-output-file file-name (const #t))) - ;; FIXME: All git tests works except this one. But *THIS* "fix" - ;; is not working, so right now I'm disabling all libgit2.jl tests - ;; (substitute* "stdlib/LibGit2/test/libgit2.jl" - ;; (("!LibGit2.use_http_path(cfg, github_cred)") "true") - ;; (("LibGit2.use_http_path(cfg, mygit_cred)") "true")) - (map (lambda (test) - (delete-file test) - (touch test)) - '("stdlib/Sockets/test/runtests.jl" - "stdlib/Distributed/test/runtests.jl" - ;; FIXME: see above - "stdlib/LibGit2/test/libgit2.jl")) (substitute* "test/choosetests.jl" - ;; These tests fail, probably because some of the input - ;; binaries have been stripped and thus backtraces don't look - ;; as expected. - (("\"backtrace\",") "") - (("\"cmdlineargs\",") "")) - #t))) + (("tests = testnames") + ;; Those failings are not deterministic. They depends on the + ;; running order. I think it depends on the number of + ;; runners, disabling it for now + ;; https://github.com/JuliaLang/julia/issues/34330 + "tests = filter(e->!in(e,[\"backtrace\",\"exceptions\", + \"stress\",\"precompile\", + \"client\",\"stacktraces\"]), + testnames)")) + ;; When HOME is not set, julia calls uv_os_homedir, which in + ;; turns call getpwuid_r. Add the HOME env variable to the + ;; external julia call to fix this + (substitute* "test/cmdlineargs.jl" + (("\"JULIA_PROJECT\"") "\"HOME\"=>\"/tmp\", \"JULIA_PROJECT\"")) + ;; Marking the test as broken as it's a known bug: + ;; https://github.com/JuliaLang/julia/issues/32377 + (substitute* "stdlib/REPL/test/replcompletions.jl" + (("@test count") "@test_broken count")) + #t)) + (add-after 'install 'make-wrapper + (lambda* (#:key inputs outputs #:allow-other-keys) + (let* ((out (assoc-ref outputs "out")) + (bin (string-append out "/bin")) + (program "julia")) + (with-directory-excursion bin + (wrap-program program + `("JULIA_LOAD_PATH" ":" prefix + ("" "$JULIA_LOAD_PATH"))) + (wrap-program program + `("JULIA_DEPOT_PATH" ":" prefix + ("" "$JULIA_DEPOT_PATH")))) + #t)))) #:make-flags (list (string-append "prefix=" (assoc-ref %outputs "out")) @@ -346,25 +348,20 @@ (_ "MARCH=UNSUPPORTED")) "CONFIG_SHELL=bash" ;needed to build bundled libraries - "USE_SYSTEM_DSFMT=0" ;not packaged for Guix and upstream has no - ;build system for a shared library. + ;; list of "USE_SYSTEM_*" is here: + ;; https://github.com/JuliaLang/julia/blob/v1.3.1/Make.inc + "USE_SYSTEM_DSFMT=1" + "USE_SYSTEM_P7ZIP=1" "USE_SYSTEM_LAPACK=1" "USE_SYSTEM_BLAS=1" "USE_BLAS64=0" ;needed when USE_SYSTEM_BLAS=1 "LIBBLAS=-lopenblas" "LIBBLASNAME=libopenblas" - "USE_SYSTEM_FFTW=1" - "LIBFFTWNAME=libfftw3" - "LIBFFTWFNAME=libfftw3f" - - ;; TODO: Suitesparse does not install shared libraries, so we cannot - ;; use the suitesparse package. - ;; "USE_SYSTEM_SUITESPARSE=1" - ;; (string-append "SUITESPARSE_INC=-I " - ;; (assoc-ref %build-inputs "suitesparse") - ;; "/include") - + "USE_SYSTEM_SUITESPARSE=1" + (string-append "SUITESPARSE_INC=-I " + (assoc-ref %build-inputs "suitesparse") + "/include") "USE_GPL_LIBS=1" ;proudly "USE_SYSTEM_UTF8PROC=1" (string-append "UTF8PROC_INC=" @@ -390,11 +387,16 @@ "USE_SYSTEM_MPFR=1" "USE_SYSTEM_ARPACK=1" "USE_SYSTEM_LIBGIT2=1" - "USE_SYSTEM_ZLIB=1" - "USE_SYSTEM_OPENSPECFUN=1"))) + (string-append "LIBUV=" + (assoc-ref %build-inputs "libuv") + "/lib/libuv.so") + (string-append "LIBUV_INC=" + (assoc-ref %build-inputs "libuv") + "/include") + "USE_SYSTEM_ZLIB=1"))) (inputs `(("llvm" ,llvm-julia) - + ("p7zip" ,p7zip) ;; The bundled version is 3.3.0 so stick to that version. With other ;; versions, we get test failures in 'linalg/arnoldi' as described in ;; <https://bugs.gnu.org/30282>. @@ -403,12 +405,12 @@ ("coreutils" ,coreutils) ;for bindings to "mkdir" and the like ("lapack" ,lapack) ("openblas" ,openblas) ;Julia does not build with Atlas - ("libunwind" ,libunwind) + ("libunwind" ,libunwind-julia) ("openlibm" ,openlibm) - ("openspecfun" ,openspecfun) + ("mbedtls" ,mbedtls-apache) + ("curl" ,curl) ("libgit2" ,libgit2) - ("fftw" ,fftw) - ("fftwf" ,fftwf) + ("libssh2" ,libssh2) ("fortran" ,gfortran) ("libuv" ,libuv-julia) ("pcre2" ,pcre2) @@ -418,31 +420,9 @@ ("which" ,which) ("zlib" ,zlib) ("gmp" ,gmp) - ("virtualenv" ,python2-virtualenv) - ;; FIXME: The following inputs are downloaded from upstream to allow us - ;; to use the lightweight Julia release tarball. Ideally, these inputs - ;; would eventually be replaced with proper Guix packages. - - ;; TODO: run "make -f contrib/repackage_system_suitesparse4.make" to copy static lib - ;; Find dependency versions here: - ;; https://raw.githubusercontent.com/JuliaLang/julia/77a2c1e245c85812dc1c7687540beedecc52758f/deps/Versions.make - ("rmath" - ,(origin - (method git-fetch) - (uri (git-reference - (url "https://github.com/JuliaLang/Rmath-julia") - (commit "v0.1"))) - (file-name "rmath-julia-0.1-checkout") - (sha256 - (base32 - "1zkpy0cg5zivq40zbhbdgj9128fqzs2j94wkwih8nc6xaj3gp9p6")))) - ("suitesparse" - ,(origin - (method url-fetch) - (uri "http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-4.4.5.tar.gz") - (sha256 - (base32 - "1jcbxb8jx5wlcixzf6n5dca2rcfx6mlcms1k2rl5gp67ay3bix43")))) + ("suitesparse" ,suitesparse) + ;; Find dependencies versions here: + ;; https://raw.githubusercontent.com/JuliaLang/julia/v1.3.0/deps/Versions.make ("objconv" ,(origin (method url-fetch) @@ -467,15 +447,7 @@ (sha256 (base32 "1p7zg31kpmpbmh1znrk1xrbd074agx13b9q4dcw8n2zrwwdlbz3b"))))) - ("dsfmt" - ,(origin - (method url-fetch) - (uri (string-append - "http://www.math.sci.hiroshima-u.ac.jp/~m-mat/MT/" - "SFMT/dSFMT-src-2.2.3.tar.gz")) - (sha256 - (base32 - "03kaqbjbi6viz0n33dk5jlf6ayxqlsq4804n7kwkndiga9s4hd42")))))) + ("dsfmt" ,dsfmt))) (native-inputs `(("openssl" ,openssl) ("perl" ,perl) @@ -485,7 +457,10 @@ (native-search-paths (list (search-path-specification (variable "JULIA_LOAD_PATH") - (files (list "share/julia/packages/"))))) + (files (list "share/julia/packages/"))) + (search-path-specification + (variable "JULIA_DEPOT_PATH") + (files (list "share/julia/"))))) ;; Julia is not officially released for ARM and MIPS. ;; See https://github.com/JuliaLang/julia/issues/10639 (supported-systems '("i686-linux" "x86_64-linux" "aarch64-linux")) diff --git a/gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch b/gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch new file mode 100644 index 0000000000..32dfd7b856 --- /dev/null +++ b/gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch @@ -0,0 +1,28 @@ +--- /dev/null ++++ b/gnu/packages/patches/julia-SOURCE_DATE_EPOCH-mtime.patch +@@ -0,0 +1,22 @@ ++Fix one of upstream non-determinism, tracked here: ++ ++https://github.com/JuliaLang/julia/issues/34115 ++https://github.com/JuliaLang/julia/issues/25900 ++ ++ ++Patch by Nicoló Balzarotti <nicolo@nixo.xyz>. ++ ++--- a/base/loading.jl +++++ b/base/loading.jl ++@@ -807,7 +807,10 @@ ++ path = normpath(joinpath(dirname(prev), _path)) ++ end ++ if _track_dependencies[] ++- push!(_require_dependencies, (mod, path, mtime(path))) +++ push!(_require_dependencies, +++ (mod, path, +++ haskey(ENV, "SOURCE_DATE_EPOCH") ? +++ parse(Float64, ENV["SOURCE_DATE_EPOCH"]) : mtime(path))) ++ end ++ return path, prev ++ end +-- +2.26.0 + |