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| -rw-r--r-- | gnu/packages/bioinformatics.scm | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index 6dde6b6976..e6b14069ec 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -13424,6 +13424,39 @@ files.") pycisTarget and SCENIC.") (license license:gpl3+))) +(define-public python-arboreto + (package + (name "python-arboreto") + (version "0.1.6") + (source (origin + (method git-fetch) + (uri (git-reference + (url "https://github.com/aertslab/arboreto") + (commit "2f475dca08f47a60acc2beb8dd897e77b7495ca4"))) + (file-name (git-file-name name version)) + (sha256 + (base32 + "0l0im8ay7l2d24f7vaha454vsaha9s36bfqhbijg3b8ir8apsd7l")))) + (build-system python-build-system) + ;; Lots of tests fail because python-distributed fails to start the + ;; "Nanny" process. + (arguments '(#:tests? #false)) + (propagated-inputs + (list python-bokeh + python-dask + python-distributed + python-numpy + python-pandas + python-scikit-learn + python-scipy + python-tornado-6)) + (home-page "https://github.com/aertslab/arboreto") + (synopsis "Gene regulatory network inference using tree-based ensemble regressors") + (description + "This package implements scalable gene regulatory network inference using +tree-based ensemble regressors.") + (license license:bsd-3))) + (define-public vbz-compression (package (name "vbz-compression") |